10 20 30 40 50 60 70 80 1WHY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 28-MAY-04 1WHY
TITLE SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF FROM TITLE 2 HYPOTHETICAL RNA BINDING PROTEIN BC052180
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RIKEN CDNA 1810017N16; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: HYPOTHETICAL PROTEIN BC052180; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1810017N16; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030916-18; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RNA RECOGNITION MOTIF, RRM, RNA BINDING DOMAIN, RBD, RNP, KEYWDS 2 STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 3 INITIATIVE, RSGI, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 1WHY 1 VERSN REVDAT 1 28-NOV-04 1WHY 0
JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF JRNL TITL 2 FROM HYPOTHETICAL RNA BINDING PROTEIN BC052180 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUENTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WHY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023597.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.13MM PROTEIN U-15N, 13C; REMARK 210 20MM PHOSPHATE BUFFER NA; REMARK 210 100MM NACL; 1MM DTT; 0.02% REMARK 210 NAN3; 90% H2O; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0.4, CYANA 2.0, REMARK 210 NMRPIPE 2.3, KUJIRA 0.901 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 75 145.53 -35.80 REMARK 500 1 SER A 76 41.28 -98.27 REMARK 500 1 ILE A 82 151.86 -45.35 REMARK 500 1 ALA A 108 -34.61 -35.15 REMARK 500 1 ARG A 113 -28.62 -39.79 REMARK 500 1 SER A 116 103.56 -50.63 REMARK 500 1 SER A 127 39.23 71.06 REMARK 500 1 ARG A 147 99.06 -34.66 REMARK 500 1 PRO A 150 95.18 -69.79 REMARK 500 2 ARG A 113 -35.33 -38.27 REMARK 500 2 ARG A 147 98.89 -42.45 REMARK 500 2 PRO A 150 97.68 -69.77 REMARK 500 3 THR A 102 104.31 -48.88 REMARK 500 3 PRO A 150 5.29 -69.76 REMARK 500 3 LEU A 151 95.85 -34.21 REMARK 500 3 PHE A 162 154.49 -39.31 REMARK 500 4 TYR A 84 147.72 -171.20 REMARK 500 4 ARG A 147 102.63 -40.72 REMARK 500 4 PRO A 150 5.29 -69.74 REMARK 500 4 LEU A 151 149.40 -34.17 REMARK 500 4 PRO A 167 98.71 -69.74 REMARK 500 5 THR A 102 108.77 -55.76 REMARK 500 5 ALA A 106 -70.06 -52.41 REMARK 500 5 VAL A 123 126.08 -170.99 REMARK 500 5 SER A 127 31.42 70.27 REMARK 500 5 ARG A 147 118.48 -37.50 REMARK 500 5 PRO A 150 5.20 -69.80 REMARK 500 5 LEU A 151 149.57 -34.65 REMARK 500 5 SER A 168 104.14 -57.27 REMARK 500 6 ALA A 108 -26.44 -39.05 REMARK 500 6 ARG A 147 95.82 -35.74 REMARK 500 6 PRO A 150 5.47 -69.76 REMARK 500 6 LEU A 151 136.12 -33.93 REMARK 500 6 SER A 169 131.10 -174.71 REMARK 500 7 SER A 76 41.55 38.93 REMARK 500 7 ARG A 147 95.84 -35.62 REMARK 500 7 PRO A 150 5.47 -69.77 REMARK 500 7 LEU A 151 100.71 -36.93 REMARK 500 8 SER A 79 42.51 34.64 REMARK 500 8 LYS A 81 43.36 -96.92 REMARK 500 8 PRO A 150 5.65 -69.77 REMARK 500 8 LEU A 151 153.94 -36.05 REMARK 500 8 LYS A 164 138.63 -173.91 REMARK 500 8 PRO A 167 94.07 -69.71 REMARK 500 8 SER A 169 107.62 -55.68 REMARK 500 9 ILE A 82 145.79 -38.03 REMARK 500 9 ARG A 147 113.42 -34.93 REMARK 500 9 PRO A 150 5.83 -69.73 REMARK 500 9 LEU A 151 149.61 -33.76 REMARK 500 10 LYS A 124 -62.77 -90.39 REMARK 500 10 ARG A 147 107.23 -38.46 REMARK 500 10 PRO A 150 5.49 -69.79 REMARK 500 10 LEU A 151 143.49 -34.25 REMARK 500 10 PHE A 162 122.66 -39.99 REMARK 500 11 SER A 75 42.47 -95.20 REMARK 500 11 THR A 91 31.30 -85.04 REMARK 500 11 ARG A 147 104.14 -42.32 REMARK 500 11 PRO A 150 6.12 -69.71 REMARK 500 11 LEU A 151 139.19 -33.51 REMARK 500 11 PRO A 167 95.50 -69.71 REMARK 500 12 LYS A 86 95.51 -50.73 REMARK 500 12 THR A 102 107.06 -59.24 REMARK 500 12 ARG A 147 103.12 -34.70 REMARK 500 12 PRO A 150 5.50 -69.73 REMARK 500 12 LEU A 151 151.72 -34.71 REMARK 500 12 LYS A 164 172.39 -46.23 REMARK 500 12 SER A 168 141.38 -38.40 REMARK 500 12 SER A 169 50.15 -103.72 REMARK 500 13 LYS A 124 -62.51 -90.36 REMARK 500 13 ALA A 129 129.99 -170.75 REMARK 500 13 ARG A 147 95.59 -34.78 REMARK 500 13 PRO A 150 5.30 -69.73 REMARK 500 13 LEU A 151 99.85 -35.88 REMARK 500 13 ARG A 156 99.41 -68.70 REMARK 500 13 ALA A 163 77.17 -101.81 REMARK 500 14 TYR A 84 77.99 -115.01 REMARK 500 14 ALA A 106 -70.01 -65.97 REMARK 500 14 SER A 127 53.70 73.59 REMARK 500 14 ARG A 147 110.81 -36.23 REMARK 500 14 PRO A 150 6.08 -69.79 REMARK 500 14 LEU A 151 154.32 -36.18 REMARK 500 14 PRO A 167 2.56 -69.76 REMARK 500 14 SER A 168 118.16 -37.19 REMARK 500 15 ASN A 88 139.81 -39.24 REMARK 500 15 PRO A 150 5.85 -69.81 REMARK 500 15 LEU A 151 130.88 -33.76 REMARK 500 15 SER A 168 47.48 36.22 REMARK 500 16 ASN A 88 139.83 -37.07 REMARK 500 16 SER A 127 45.60 72.71 REMARK 500 16 ALA A 144 -66.93 -90.60 REMARK 500 16 ARG A 147 105.14 -50.90 REMARK 500 16 PRO A 150 5.19 -69.73 REMARK 500 16 LEU A 151 97.47 -33.42 REMARK 500 16 SER A 168 148.33 -170.77 REMARK 500 17 SER A 78 113.55 -168.13 REMARK 500 17 ILE A 82 43.30 36.69 REMARK 500 17 TYR A 84 43.26 -94.82 REMARK 500 17 THR A 91 33.80 -84.20 REMARK 500 17 ARG A 113 -39.50 -34.57 REMARK 500 17 SER A 127 39.41 73.75 REMARK 500 17 ARG A 147 115.72 -39.15 REMARK 500 17 PRO A 150 5.46 -69.79 REMARK 500 17 LEU A 151 145.91 -34.20 REMARK 500 17 SER A 168 106.57 -57.86 REMARK 500 18 SER A 76 42.43 -100.31 REMARK 500 18 ALA A 87 -71.44 -120.98 REMARK 500 18 ASN A 88 140.42 -171.11 REMARK 500 18 ARG A 147 105.43 -46.85 REMARK 500 18 PRO A 150 6.47 -69.75 REMARK 500 18 LYS A 164 90.04 -68.09 REMARK 500 19 SER A 78 43.41 -84.18 REMARK 500 19 TYR A 84 146.43 -35.13 REMARK 500 19 LEU A 107 -70.12 -69.33 REMARK 500 19 SER A 127 51.77 72.89 REMARK 500 19 ARG A 147 103.62 -43.95 REMARK 500 19 PRO A 150 5.38 -69.72 REMARK 500 19 LEU A 151 102.63 -35.24 REMARK 500 20 ALA A 144 -62.47 -91.49 REMARK 500 20 ARG A 147 95.01 -41.26 REMARK 500 20 PRO A 150 79.94 -69.73 REMARK 500 20 ALA A 163 -72.10 -58.39 REMARK 500 20 LYS A 164 146.52 -171.03 REMARK 500 20 SER A 168 101.89 -35.97 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007120361.1 RELATED DB: TARGETDB
DBREF 1WHY A 81 164 GB 40254294 NP_780611 81 164
SEQADV 1WHY GLY A 74 GB 40254294 CLONING ARTIFACT SEQADV 1WHY SER A 75 GB 40254294 CLONING ARTIFACT SEQADV 1WHY SER A 76 GB 40254294 CLONING ARTIFACT SEQADV 1WHY GLY A 77 GB 40254294 CLONING ARTIFACT SEQADV 1WHY SER A 78 GB 40254294 CLONING ARTIFACT SEQADV 1WHY SER A 79 GB 40254294 CLONING ARTIFACT SEQADV 1WHY GLY A 80 GB 40254294 CLONING ARTIFACT SEQADV 1WHY SER A 165 GB 40254294 CLONING ARTIFACT SEQADV 1WHY GLY A 166 GB 40254294 CLONING ARTIFACT SEQADV 1WHY PRO A 167 GB 40254294 CLONING ARTIFACT SEQADV 1WHY SER A 168 GB 40254294 CLONING ARTIFACT SEQADV 1WHY SER A 169 GB 40254294 CLONING ARTIFACT SEQADV 1WHY GLY A 170 GB 40254294 CLONING ARTIFACT
SEQRES 1 A 97 GLY SER SER GLY SER SER GLY LYS ILE GLY TYR GLY LYS SEQRES 2 A 97 ALA ASN PRO THR THR ARG LEU TRP VAL GLY GLY LEU GLY SEQRES 3 A 97 PRO ASN THR SER LEU ALA ALA LEU ALA ARG GLU PHE ASP SEQRES 4 A 97 ARG PHE GLY SER ILE ARG THR ILE ASP HIS VAL LYS GLY SEQRES 5 A 97 ASP SER PHE ALA TYR ILE GLN TYR GLU SER LEU ASP ALA SEQRES 6 A 97 ALA GLN ALA ALA CYS ALA LYS MET ARG GLY PHE PRO LEU SEQRES 7 A 97 GLY GLY PRO ASP ARG ARG LEU ARG VAL ASP PHE ALA LYS SEQRES 8 A 97 SER GLY PRO SER SER GLY
HELIX 1 1 LEU A 104 ASP A 112 1 9 HELIX 2 2 LEU A 136 MET A 146 1 11
SHEET 1 A 4 ILE A 117 HIS A 122 0 SHEET 2 A 4 ALA A 129 TYR A 133 -1 O GLN A 132 N ARG A 118 SHEET 3 A 4 LEU A 93 GLY A 96 -1 N VAL A 95 O ALA A 129 SHEET 4 A 4 ARG A 159 PHE A 162 -1 O ASP A 161 N TRP A 94
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000