10 20 30 40 50 60 70 80 1WHX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 28-MAY-04 1WHX
TITLE SOLUTION STRUCTURE OF THE SECOND RNA BINDING DOMAIN FROM TITLE 2 HYPOTHETICAL PROTEIN BAB23448
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RIKEN CDNA 1200009A02; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: HYPOTHETICAL PROTEIN BAB23448; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1200009A02; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030811-91; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RNA RECOGNITION MOTIF, RRM, RNA BINDING DOMAIN, RBD, RNP, KEYWDS 2 STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 3 INITIATIVE, RSGI, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 1WHX 1 VERSN REVDAT 1 28-NOV-04 1WHX 0
JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND RNA BINDING JRNL TITL 2 DOMAIN FROM HYPOTHETICAL PROTEIN BAB23448 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUENTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WHX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023596.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.08MM PROTEIN U-15N, 13C; REMARK 210 20MM PHOSPHATE BUFFER NA; REMARK 210 100MM NACL; 1MM DTT; 0.02% REMARK 210 NAN3; 90% H2O; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0.4, CYANA 2.0, REMARK 210 NMRPIPE 2.3, KUJIRA 0.901 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 228 52.91 70.75 REMARK 500 1 HIS A 276 -70.98 -57.28 REMARK 500 1 PHE A 282 -73.74 -69.63 REMARK 500 1 HIS A 283 -71.76 -110.41 REMARK 500 1 GLU A 309 151.45 -44.12 REMARK 500 1 SER A 317 120.61 -38.55 REMARK 500 1 PRO A 319 -178.86 -69.78 REMARK 500 2 SER A 213 -60.28 -101.70 REMARK 500 2 ASN A 228 52.85 72.65 REMARK 500 2 HIS A 283 -75.53 -123.94 REMARK 500 2 PHE A 297 -62.72 -96.06 REMARK 500 2 PRO A 301 -175.59 -69.79 REMARK 500 2 GLN A 302 45.95 -109.68 REMARK 500 2 GLU A 309 119.94 -34.69 REMARK 500 2 PRO A 319 -174.71 -69.76 REMARK 500 3 SER A 214 -66.63 -95.79 REMARK 500 3 ASN A 228 53.97 74.33 REMARK 500 3 THR A 233 155.67 -46.62 REMARK 500 3 PHE A 282 -74.96 -69.84 REMARK 500 3 HIS A 283 -70.17 -116.02 REMARK 500 3 TRP A 291 150.87 -37.48 REMARK 500 3 PRO A 293 -174.87 -69.71 REMARK 500 3 PRO A 301 -172.43 -69.77 REMARK 500 3 GLN A 302 74.54 -115.22 REMARK 500 3 GLN A 307 -31.61 -38.89 REMARK 500 3 SER A 317 43.79 34.49 REMARK 500 3 PRO A 319 -175.03 -69.78 REMARK 500 4 THR A 241 -38.97 -39.54 REMARK 500 4 PHE A 282 -73.34 -78.72 REMARK 500 4 HIS A 283 -71.99 -118.29 REMARK 500 4 TRP A 291 150.79 -49.49 REMARK 500 4 GLU A 309 127.28 -36.03 REMARK 500 4 SER A 317 103.89 -44.04 REMARK 500 4 SER A 321 147.42 -34.91 REMARK 500 5 PHE A 282 -72.25 -70.55 REMARK 500 5 HIS A 283 -74.92 -112.78 REMARK 500 5 PRO A 301 -169.19 -69.78 REMARK 500 5 HIS A 308 -32.94 -39.92 REMARK 500 5 GLU A 309 123.24 -38.63 REMARK 500 5 GLN A 310 96.96 -33.96 REMARK 500 5 SER A 317 124.52 -34.88 REMARK 500 6 SER A 220 154.32 -44.57 REMARK 500 6 THR A 233 163.41 -44.70 REMARK 500 6 ALA A 235 -36.78 -37.59 REMARK 500 6 HIS A 276 -72.10 -63.13 REMARK 500 6 TYR A 279 32.30 70.83 REMARK 500 6 PHE A 282 -72.67 -78.55 REMARK 500 6 HIS A 283 -73.05 -108.46 REMARK 500 6 TRP A 291 146.32 -38.82 REMARK 500 6 PRO A 293 -174.63 -69.75 REMARK 500 6 ALA A 299 149.54 -174.59 REMARK 500 6 GLN A 302 67.28 -119.93 REMARK 500 6 HIS A 308 -39.87 -39.16 REMARK 500 6 GLU A 309 100.64 -35.09 REMARK 500 6 SER A 317 132.83 -38.00 REMARK 500 6 PRO A 319 -179.19 -69.79 REMARK 500 7 SER A 220 156.91 -45.25 REMARK 500 7 ASN A 228 52.66 70.49 REMARK 500 7 THR A 233 159.49 -41.82 REMARK 500 7 HIS A 283 -73.17 -121.89 REMARK 500 7 PRO A 293 -176.74 -69.72 REMARK 500 7 GLU A 309 158.18 -39.21 REMARK 500 7 SER A 317 129.11 -35.56 REMARK 500 7 SER A 321 146.78 -35.11 REMARK 500 8 THR A 233 159.68 -46.87 REMARK 500 8 SER A 247 166.20 -46.51 REMARK 500 8 HIS A 283 -72.48 -119.93 REMARK 500 8 PRO A 293 -179.52 -69.78 REMARK 500 8 PHE A 297 -62.15 -96.66 REMARK 500 8 ALA A 300 143.68 -38.73 REMARK 500 8 GLN A 302 41.99 -101.27 REMARK 500 8 GLU A 309 94.89 -34.49 REMARK 500 8 SER A 317 122.58 -38.06 REMARK 500 8 SER A 321 106.97 -44.25 REMARK 500 9 SER A 220 162.14 -42.26 REMARK 500 9 ASN A 228 52.96 71.45 REMARK 500 9 THR A 233 163.96 -45.69 REMARK 500 9 ALA A 278 132.39 -37.02 REMARK 500 9 HIS A 283 -74.84 -118.04 REMARK 500 9 PRO A 293 -172.48 -69.78 REMARK 500 9 SER A 317 122.98 -34.97 REMARK 500 10 ASN A 228 54.82 74.90 REMARK 500 10 THR A 233 163.41 -48.71 REMARK 500 10 HIS A 283 -72.95 -121.43 REMARK 500 10 TRP A 291 153.78 -38.82 REMARK 500 10 PRO A 293 -171.02 -69.74 REMARK 500 10 PRO A 301 -175.05 -69.76 REMARK 500 10 HIS A 308 -29.33 -37.09 REMARK 500 10 GLU A 309 105.99 -35.03 REMARK 500 10 SER A 317 103.76 -40.33 REMARK 500 11 ASN A 228 53.06 73.99 REMARK 500 11 SER A 247 150.98 -47.22 REMARK 500 11 HIS A 276 -70.32 -70.89 REMARK 500 11 HIS A 283 -73.65 -115.53 REMARK 500 11 PRO A 293 -172.11 -69.74 REMARK 500 11 SER A 317 41.45 71.69 REMARK 500 12 ASN A 228 52.90 71.94 REMARK 500 12 THR A 233 163.81 -43.35 REMARK 500 12 SER A 247 155.25 -46.34 REMARK 500 12 ALA A 278 136.26 -36.79 REMARK 500 12 PHE A 282 -74.97 -77.54 REMARK 500 12 HIS A 283 -72.62 -108.67 REMARK 500 12 PRO A 293 -174.76 -69.77 REMARK 500 12 ALA A 300 143.89 -174.95 REMARK 500 12 PRO A 301 85.96 -69.65 REMARK 500 12 HIS A 308 -38.38 -36.97 REMARK 500 12 SER A 317 110.76 -34.66 REMARK 500 13 ASN A 228 49.30 73.62 REMARK 500 13 HIS A 283 -60.54 -120.90 REMARK 500 13 HIS A 284 -32.97 -134.98 REMARK 500 13 PRO A 293 -176.32 -69.74 REMARK 500 13 GLN A 307 -38.29 -39.43 REMARK 500 13 GLU A 309 139.52 -34.54 REMARK 500 13 SER A 317 123.73 -34.53 REMARK 500 14 ASN A 228 52.50 73.97 REMARK 500 14 THR A 233 164.13 -41.56 REMARK 500 14 TYR A 279 37.31 73.12 REMARK 500 14 HIS A 283 -74.89 -122.28 REMARK 500 14 TRP A 291 150.21 -44.79 REMARK 500 14 PRO A 293 -170.40 -69.78 REMARK 500 14 GLN A 302 40.53 -106.34 REMARK 500 14 GLN A 307 -33.56 -39.73 REMARK 500 14 HIS A 308 -35.69 -36.80 REMARK 500 14 GLU A 309 102.36 -34.45 REMARK 500 14 SER A 317 123.15 -38.14 REMARK 500 15 SER A 220 158.51 -44.62 REMARK 500 15 THR A 233 158.42 -43.64 REMARK 500 15 THR A 259 151.47 -44.42 REMARK 500 15 HIS A 276 -73.74 -48.93 REMARK 500 15 ALA A 278 147.43 -36.38 REMARK 500 15 HIS A 283 -75.51 -123.02 REMARK 500 15 PRO A 293 -174.15 -69.83 REMARK 500 15 PHE A 297 -62.99 -95.98 REMARK 500 15 HIS A 308 -35.65 -36.90 REMARK 500 15 GLU A 309 102.12 -34.47 REMARK 500 15 SER A 317 121.11 -34.52 REMARK 500 15 PRO A 319 -173.00 -69.76 REMARK 500 16 SER A 220 151.25 -45.82 REMARK 500 16 ASN A 228 47.20 72.90 REMARK 500 16 THR A 233 164.24 -49.08 REMARK 500 16 HIS A 276 -72.62 -65.12 REMARK 500 16 ALA A 278 143.55 -39.65 REMARK 500 16 PHE A 282 -73.62 -84.23 REMARK 500 16 PRO A 293 -175.45 -69.75 REMARK 500 16 ALA A 299 138.87 -175.01 REMARK 500 16 ALA A 300 140.62 -173.78 REMARK 500 16 PRO A 301 -170.69 -69.75 REMARK 500 16 GLN A 302 108.38 -172.41 REMARK 500 16 ASP A 305 -25.84 -39.21 REMARK 500 16 GLN A 307 -30.44 -39.48 REMARK 500 16 HIS A 308 -38.76 -39.42 REMARK 500 16 GLU A 309 103.02 -36.31 REMARK 500 16 SER A 317 122.96 -37.55 REMARK 500 16 PRO A 319 -173.15 -69.71 REMARK 500 17 THR A 233 155.12 -45.62 REMARK 500 17 ALA A 278 145.97 -38.55 REMARK 500 17 PHE A 282 -71.40 -79.31 REMARK 500 17 HIS A 284 -31.47 -131.48 REMARK 500 17 ILE A 294 -19.25 -48.50 REMARK 500 17 VAL A 296 -34.65 -39.03 REMARK 500 17 ALA A 300 134.83 -172.65 REMARK 500 18 ASN A 228 50.32 71.53 REMARK 500 18 THR A 233 160.65 -40.35 REMARK 500 18 ALA A 278 148.24 -36.60 REMARK 500 18 PHE A 282 -75.11 -67.57 REMARK 500 18 HIS A 284 -32.61 -134.22 REMARK 500 18 TRP A 291 152.01 -47.70 REMARK 500 18 GLN A 302 43.95 -99.49 REMARK 500 18 GLU A 309 107.24 -34.55 REMARK 500 18 PRO A 311 -177.88 -69.72 REMARK 500 18 SER A 317 114.59 -34.93 REMARK 500 19 ASN A 228 50.35 71.25 REMARK 500 19 THR A 233 162.21 -44.42 REMARK 500 19 ALA A 278 137.65 -38.27 REMARK 500 19 PHE A 282 -72.61 -84.86 REMARK 500 19 HIS A 283 -74.87 -110.70 REMARK 500 19 PRO A 301 88.39 -69.81 REMARK 500 19 GLN A 302 42.62 -98.80 REMARK 500 19 HIS A 308 -39.53 -36.96 REMARK 500 19 GLU A 309 100.07 -34.45 REMARK 500 19 SER A 317 123.37 -39.53 REMARK 500 19 SER A 321 147.84 -171.15 REMARK 500 20 ASN A 228 48.87 70.74 REMARK 500 20 THR A 233 160.20 -44.36 REMARK 500 20 HIS A 283 -76.08 -124.01 REMARK 500 20 PRO A 293 -176.24 -69.81 REMARK 500 20 PRO A 301 -172.60 -69.74 REMARK 500 20 GLU A 309 150.29 -39.63 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007011210.1 RELATED DB: TARGETDB
DBREF 1WHX A 219 316 UNP Q8R3C6 RBM19_MOUSE 219 316
SEQADV 1WHX GLY A 212 UNP Q8R3C6 CLONING ARTIFACT SEQADV 1WHX SER A 213 UNP Q8R3C6 CLONING ARTIFACT SEQADV 1WHX SER A 214 UNP Q8R3C6 CLONING ARTIFACT SEQADV 1WHX GLY A 215 UNP Q8R3C6 CLONING ARTIFACT SEQADV 1WHX SER A 216 UNP Q8R3C6 CLONING ARTIFACT SEQADV 1WHX SER A 217 UNP Q8R3C6 CLONING ARTIFACT SEQADV 1WHX GLY A 218 UNP Q8R3C6 CLONING ARTIFACT SEQADV 1WHX SER A 317 UNP Q8R3C6 CLONING ARTIFACT SEQADV 1WHX GLY A 318 UNP Q8R3C6 CLONING ARTIFACT SEQADV 1WHX PRO A 319 UNP Q8R3C6 CLONING ARTIFACT SEQADV 1WHX SER A 320 UNP Q8R3C6 CLONING ARTIFACT SEQADV 1WHX SER A 321 UNP Q8R3C6 CLONING ARTIFACT SEQADV 1WHX GLY A 322 UNP Q8R3C6 CLONING ARTIFACT
SEQRES 1 A 111 GLY SER SER GLY SER SER GLY ARG SER LYS THR VAL ILE SEQRES 2 A 111 LEU ALA LYS ASN LEU PRO ALA GLY THR LEU ALA ALA GLU SEQRES 3 A 111 ILE GLN GLU THR PHE SER ARG PHE GLY SER LEU GLY ARG SEQRES 4 A 111 VAL LEU LEU PRO GLU GLY GLY ILE THR ALA ILE VAL GLU SEQRES 5 A 111 PHE LEU GLU PRO LEU GLU ALA ARG LYS ALA PHE ARG HIS SEQRES 6 A 111 LEU ALA TYR SER LYS PHE HIS HIS VAL PRO LEU TYR LEU SEQRES 7 A 111 GLU TRP ALA PRO ILE GLY VAL PHE GLY ALA ALA PRO GLN SEQRES 8 A 111 LYS LYS ASP SER GLN HIS GLU GLN PRO ALA GLU LYS ALA SEQRES 9 A 111 GLU SER GLY PRO SER SER GLY
HELIX 1 1 ALA A 235 SER A 243 1 9 HELIX 2 2 PRO A 267 LEU A 277 1 11
SHEET 1 A 4 LEU A 248 LEU A 252 0 SHEET 2 A 4 ALA A 260 PHE A 264 -1 O ILE A 261 N LEU A 252 SHEET 3 A 4 VAL A 223 LYS A 227 -1 N ILE A 224 O VAL A 262 SHEET 4 A 4 TYR A 288 TRP A 291 -1 O GLU A 290 N LEU A 225
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000