10 20 30 40 50 60 70 80 1WHW - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 28-MAY-04 1WHW
TITLE SOLUTION STRUCTURE OF THE N-TERMINAL RNA BINDING DOMAIN TITLE 2 FROM HYPOTHETICAL PROTEIN BAB23448
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RIKEN CDNA 1200009A02; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: HYPOTHETICAL PROTEIN BAB23448; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1200009A02; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040202-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RNA RECOGNITION MOTIF, RRM, RNA BINDING DOMAIN, RBD, RNP, KEYWDS 2 STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 3 INITIATIVE, RSGI, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 1WHW 1 VERSN REVDAT 1 28-NOV-04 1WHW 0
JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL RNA BINDING JRNL TITL 2 DOMAIN FROM HYPOTHETICAL PROTEIN BAB23448 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUENTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WHW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023595.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.25MM PROTEIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0.4, CYANA 2.0, REMARK 210 NMRPIPE 2.3, KUJIRA 0.901 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 44 54.70 70.67 REMARK 500 1 GLU A 51 -35.70 -34.78 REMARK 500 1 LEU A 74 -61.91 -105.69 REMARK 500 1 ASP A 100 85.35 -54.27 REMARK 500 1 ILE A 116 100.02 -55.99 REMARK 500 1 GLU A 119 47.05 -85.93 REMARK 500 2 ASN A 44 51.93 70.07 REMARK 500 2 ASP A 100 103.12 -45.88 REMARK 500 2 MET A 108 99.22 -66.83 REMARK 500 2 ILE A 116 108.60 -35.11 REMARK 500 2 LYS A 117 59.39 -100.76 REMARK 500 2 PRO A 125 88.51 -69.78 REMARK 500 3 SER A 32 43.82 36.07 REMARK 500 3 ASN A 44 49.98 74.81 REMARK 500 3 ASP A 100 100.50 -45.73 REMARK 500 3 MET A 108 95.87 -68.83 REMARK 500 4 ASN A 44 47.26 71.98 REMARK 500 4 GLU A 66 143.87 -170.06 REMARK 500 4 ASP A 100 96.69 -44.25 REMARK 500 4 MET A 108 98.80 -63.90 REMARK 500 4 SER A 127 -45.13 -130.54 REMARK 500 5 SER A 59 -35.50 -35.54 REMARK 500 5 ASP A 100 82.62 -55.07 REMARK 500 6 ASN A 44 55.03 74.80 REMARK 500 6 GLU A 66 144.23 -170.14 REMARK 500 6 ASP A 100 96.35 -54.72 REMARK 500 6 ILE A 116 104.05 -39.69 REMARK 500 6 LYS A 117 93.89 -61.23 REMARK 500 7 SER A 35 83.07 -65.01 REMARK 500 7 ASN A 44 50.92 72.45 REMARK 500 7 GLU A 66 139.48 -170.56 REMARK 500 7 ASP A 100 92.55 -48.68 REMARK 500 7 MET A 108 94.87 -68.17 REMARK 500 7 GLN A 122 120.07 -172.86 REMARK 500 8 SER A 32 122.30 -173.03 REMARK 500 8 ASN A 44 52.90 72.68 REMARK 500 8 GLU A 51 -36.14 -34.57 REMARK 500 8 ASP A 53 -38.01 -35.06 REMARK 500 8 ASP A 100 88.24 -48.63 REMARK 500 8 ALA A 120 113.98 -163.97 REMARK 500 8 GLN A 122 87.64 -61.93 REMARK 500 9 SER A 59 -39.82 -35.52 REMARK 500 9 ASP A 100 95.19 -36.70 REMARK 500 9 SER A 121 44.40 -108.78 REMARK 500 10 ASN A 44 47.61 73.95 REMARK 500 10 ASP A 100 92.31 -48.73 REMARK 500 10 MET A 108 96.07 -63.23 REMARK 500 10 SER A 127 -55.22 -125.25 REMARK 500 11 SER A 32 41.90 -98.07 REMARK 500 11 SER A 37 -60.80 -107.07 REMARK 500 11 GLU A 51 -33.12 -37.82 REMARK 500 11 ASP A 100 92.83 -39.00 REMARK 500 11 ILE A 116 108.32 -50.85 REMARK 500 11 PRO A 125 99.40 -69.77 REMARK 500 12 SER A 37 148.61 -34.50 REMARK 500 12 ASN A 44 54.53 71.15 REMARK 500 12 ASP A 100 98.92 -49.67 REMARK 500 12 ILE A 116 120.61 -39.27 REMARK 500 12 GLN A 122 138.75 -171.35 REMARK 500 12 PRO A 125 80.89 -69.73 REMARK 500 13 ASN A 44 54.36 74.96 REMARK 500 13 SER A 59 -37.88 -34.39 REMARK 500 13 LYS A 76 26.20 46.18 REMARK 500 13 ASP A 100 108.19 -45.15 REMARK 500 13 LYS A 117 108.54 -58.58 REMARK 500 13 SER A 121 42.16 -83.12 REMARK 500 14 SER A 32 -46.12 -130.62 REMARK 500 14 ASN A 44 54.97 71.65 REMARK 500 14 LEU A 57 -70.95 -46.62 REMARK 500 14 ASP A 100 104.93 -44.34 REMARK 500 14 SER A 121 121.67 -172.54 REMARK 500 14 SER A 126 99.41 -44.45 REMARK 500 15 ASN A 44 46.15 74.23 REMARK 500 15 GLU A 51 -28.01 -37.66 REMARK 500 15 ASP A 100 99.26 -50.71 REMARK 500 15 GLN A 105 26.61 48.37 REMARK 500 16 SER A 35 78.98 -106.80 REMARK 500 16 ASN A 44 54.51 74.74 REMARK 500 16 GLU A 51 -33.60 -37.13 REMARK 500 16 ASP A 100 87.69 -49.14 REMARK 500 16 SER A 127 103.76 -52.73 REMARK 500 17 ASN A 44 54.64 74.95 REMARK 500 17 ASP A 100 93.41 -34.44 REMARK 500 17 LYS A 118 132.20 -171.45 REMARK 500 18 SER A 32 105.52 -49.00 REMARK 500 18 SER A 35 120.82 -37.67 REMARK 500 18 ASN A 44 41.36 72.15 REMARK 500 18 ASP A 100 97.23 -44.85 REMARK 500 18 MET A 108 96.74 -64.91 REMARK 500 18 LYS A 117 48.69 -88.66 REMARK 500 18 SER A 121 40.60 -82.88 REMARK 500 19 ASP A 100 96.24 -44.15 REMARK 500 19 ALA A 120 127.03 -171.02 REMARK 500 20 SER A 59 -37.22 -36.48 REMARK 500 20 ASP A 100 94.39 -43.15 REMARK 500 20 ILE A 116 84.32 -55.90 REMARK 500 20 LYS A 117 37.15 33.99 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007011210.2 RELATED DB: TARGETDB
DBREF 1WHW A 37 122 GB 12835985 BAB23448 37 122
SEQADV 1WHW GLY A 30 GB 12835985 CLONING ARTIFACT SEQADV 1WHW SER A 31 GB 12835985 CLONING ARTIFACT SEQADV 1WHW SER A 32 GB 12835985 CLONING ARTIFACT SEQADV 1WHW GLY A 33 GB 12835985 CLONING ARTIFACT SEQADV 1WHW SER A 34 GB 12835985 CLONING ARTIFACT SEQADV 1WHW SER A 35 GB 12835985 CLONING ARTIFACT SEQADV 1WHW GLY A 36 GB 12835985 CLONING ARTIFACT SEQADV 1WHW SER A 123 GB 12835985 CLONING ARTIFACT SEQADV 1WHW GLY A 124 GB 12835985 CLONING ARTIFACT SEQADV 1WHW PRO A 125 GB 12835985 CLONING ARTIFACT SEQADV 1WHW SER A 126 GB 12835985 CLONING ARTIFACT SEQADV 1WHW SER A 127 GB 12835985 CLONING ARTIFACT SEQADV 1WHW GLY A 128 GB 12835985 CLONING ARTIFACT
SEQRES 1 A 99 GLY SER SER GLY SER SER GLY SER GLY ARG LEU PHE VAL SEQRES 2 A 99 ARG ASN LEU SER TYR THR SER SER GLU GLU ASP LEU GLU SEQRES 3 A 99 LYS LEU PHE SER ALA TYR GLY PRO LEU SER GLU LEU HIS SEQRES 4 A 99 TYR PRO ILE ASP SER LEU THR LYS LYS PRO LYS GLY PHE SEQRES 5 A 99 ALA PHE VAL THR PHE MET PHE PRO GLU HIS ALA VAL LYS SEQRES 6 A 99 ALA TYR ALA GLU VAL ASP GLY GLN VAL PHE GLN GLY ARG SEQRES 7 A 99 MET LEU HIS VAL LEU PRO SER THR ILE LYS LYS GLU ALA SEQRES 8 A 99 SER GLN SER GLY PRO SER SER GLY
HELIX 1 1 SER A 50 ALA A 60 1 11 HELIX 2 2 PHE A 88 VAL A 99 1 12
SHEET 1 A 6 LEU A 64 HIS A 68 0 SHEET 2 A 6 PHE A 81 PHE A 86 -1 O THR A 85 N SER A 65 SHEET 3 A 6 GLY A 38 ARG A 43 -1 N GLY A 38 O PHE A 86 SHEET 4 A 6 HIS A 110 PRO A 113 -1 O LEU A 112 N PHE A 41 SHEET 5 A 6 MET A 108 LEU A 109 -1 SHEET 6 A 6 GLN A 102 VAL A 103 -1 N GLN A 102 O LEU A 109
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000