10 20 30 40 50 60 70 80 1WHV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 28-MAY-04 1WHV
TITLE SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN FROM TITLE 2 HYPOTHETICAL PROTEIN BAB23382
COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(A)-SPECIFIC RIBONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: DEADENYLATION NUCLEASE, HYPOTHETICAL PROTEIN COMPND 6 BAB23382; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1200003I18; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P031020-39; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RNA RECOGNITION MOTIF, RRM, RNA BINDING DOMAIN, RBD, RNP, KEYWDS 2 POLY(A)-SPECIFIC RIBONUCLEASE, PARN, STRUCTURAL GENOMICS, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 1WHV 1 VERSN REVDAT 1 28-NOV-04 1WHV 0
JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN FROM JRNL TITL 2 HYPOTHETICAL PROTEIN BAB23382 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUENTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WHV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023594.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.94MM PROTEIN U-15N, 13C; REMARK 210 20MM PHOSPHATE BUFFER NA; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 90% H2O; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0.4, CYANA 2.0, REMARK 210 NMRPIPE 2.3, KUJIRA 0.901 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 449 -175.31 -66.60 REMARK 500 1 ILE A 469 -66.20 -90.60 REMARK 500 1 VAL A 515 141.96 -39.41 REMARK 500 1 SER A 521 108.32 -39.21 REMARK 500 2 ASP A 432 177.21 -54.32 REMARK 500 2 LYS A 436 106.15 -165.00 REMARK 500 2 GLU A 448 -37.22 -36.77 REMARK 500 2 TRP A 449 172.80 -55.25 REMARK 500 2 GLN A 514 132.02 -174.02 REMARK 500 2 SER A 520 115.96 -163.09 REMARK 500 3 PRO A 431 1.49 -69.78 REMARK 500 3 LYS A 436 41.32 -96.97 REMARK 500 3 ARG A 437 78.02 -64.73 REMARK 500 3 TRP A 449 -178.08 -65.66 REMARK 500 3 SER A 459 -31.77 -36.16 REMARK 500 3 THR A 472 -33.02 -132.14 REMARK 500 3 VAL A 515 164.02 -48.45 REMARK 500 4 SER A 425 -60.64 -96.59 REMARK 500 4 PRO A 431 1.48 -69.76 REMARK 500 4 LEU A 433 159.03 -47.00 REMARK 500 4 PRO A 435 -175.29 -69.73 REMARK 500 4 LYS A 436 150.57 -35.91 REMARK 500 4 TRP A 449 179.37 -50.35 REMARK 500 4 SER A 459 -33.30 -38.25 REMARK 500 4 ILE A 469 -64.27 -90.87 REMARK 500 4 TYR A 505 -75.00 -83.89 REMARK 500 4 LYS A 509 -71.10 -55.14 REMARK 500 4 LYS A 513 110.40 -168.33 REMARK 500 4 LYS A 516 92.39 -58.72 REMARK 500 4 SER A 520 113.21 -173.11 REMARK 500 5 GLN A 514 134.55 -171.65 REMARK 500 6 LYS A 436 47.64 -84.12 REMARK 500 6 ARG A 437 41.03 -87.53 REMARK 500 6 TRP A 449 -176.31 -68.76 REMARK 500 6 ALA A 460 -36.19 -36.28 REMARK 500 6 ILE A 469 -64.20 -90.70 REMARK 500 6 LYS A 509 -72.17 -40.87 REMARK 500 6 LYS A 513 110.02 -173.70 REMARK 500 6 SER A 520 124.29 -170.38 REMARK 500 7 LEU A 433 173.01 -51.29 REMARK 500 7 GLN A 434 144.11 -35.93 REMARK 500 7 TRP A 449 -176.54 -69.26 REMARK 500 7 ILE A 469 -70.57 -90.54 REMARK 500 7 LYS A 513 116.70 -168.25 REMARK 500 8 SER A 425 133.62 -171.87 REMARK 500 8 THR A 472 -38.07 -131.97 REMARK 500 8 GLN A 510 173.74 -54.75 REMARK 500 8 PRO A 519 94.17 -69.72 REMARK 500 9 SER A 428 176.98 -52.01 REMARK 500 9 LEU A 433 86.38 -59.88 REMARK 500 9 PRO A 435 -178.52 -69.77 REMARK 500 9 TRP A 449 -179.33 -52.43 REMARK 500 9 ALA A 460 -39.03 -33.89 REMARK 500 9 THR A 472 -41.63 -132.20 REMARK 500 10 LEU A 433 89.41 -58.62 REMARK 500 10 PRO A 435 -174.85 -69.83 REMARK 500 10 TRP A 449 -174.87 -66.54 REMARK 500 10 ILE A 469 -70.75 -90.46 REMARK 500 11 LEU A 433 97.32 -51.94 REMARK 500 11 GLN A 434 151.55 -41.33 REMARK 500 11 PRO A 435 -179.19 -69.81 REMARK 500 11 LYS A 436 42.37 -101.33 REMARK 500 11 ARG A 437 74.89 -110.29 REMARK 500 11 TRP A 449 -175.30 -69.61 REMARK 500 11 LYS A 511 42.44 -81.26 REMARK 500 11 SER A 520 138.95 -34.66 REMARK 500 12 PRO A 431 1.47 -69.76 REMARK 500 12 LYS A 513 116.89 -174.91 REMARK 500 12 LYS A 516 120.43 -171.42 REMARK 500 12 PRO A 519 -174.11 -69.77 REMARK 500 13 PRO A 431 1.55 -69.77 REMARK 500 13 PRO A 435 -174.51 -69.77 REMARK 500 13 LYS A 436 146.41 -34.93 REMARK 500 13 THR A 451 -28.36 -37.51 REMARK 500 13 ALA A 460 -39.23 -34.03 REMARK 500 13 ILE A 469 -70.61 -89.95 REMARK 500 13 LYS A 511 86.94 -65.73 REMARK 500 13 LYS A 516 126.62 -38.18 REMARK 500 14 PRO A 431 1.53 -69.78 REMARK 500 14 LEU A 433 92.17 -61.12 REMARK 500 14 LYS A 436 38.14 -94.45 REMARK 500 14 GLU A 448 -32.28 -38.72 REMARK 500 14 TRP A 449 -179.31 -61.66 REMARK 500 14 ILE A 469 -70.34 -90.25 REMARK 500 14 GLN A 485 -70.09 -48.66 REMARK 500 14 LYS A 511 128.51 -173.48 REMARK 500 14 LYS A 513 109.85 -171.92 REMARK 500 14 VAL A 515 142.78 -37.52 REMARK 500 14 PRO A 519 2.28 -69.70 REMARK 500 15 LYS A 436 42.39 -92.29 REMARK 500 15 ARG A 437 52.53 -112.89 REMARK 500 15 TYR A 455 -71.19 -49.81 REMARK 500 15 ILE A 469 -70.65 -90.94 REMARK 500 15 LYS A 511 112.23 -173.22 REMARK 500 15 SER A 520 146.75 -34.74 REMARK 500 15 SER A 521 -179.92 -50.92 REMARK 500 16 ASP A 432 125.80 -36.22 REMARK 500 16 LYS A 436 129.11 -173.33 REMARK 500 16 LYS A 447 -27.65 -37.82 REMARK 500 16 LYS A 513 112.11 -170.37 REMARK 500 16 LYS A 516 141.80 -174.14 REMARK 500 17 LYS A 436 145.59 -35.80 REMARK 500 17 ARG A 437 90.16 -67.63 REMARK 500 17 GLU A 448 -37.37 -37.67 REMARK 500 17 TRP A 449 -176.30 -54.53 REMARK 500 17 SER A 459 -34.97 -39.24 REMARK 500 17 LYS A 511 116.81 -170.45 REMARK 500 17 GLN A 514 136.46 -173.49 REMARK 500 18 ARG A 437 78.58 -106.12 REMARK 500 18 GLU A 448 -30.00 -37.48 REMARK 500 18 TRP A 449 -176.11 -63.71 REMARK 500 18 GLN A 510 176.98 -55.32 REMARK 500 19 PRO A 431 1.10 -69.72 REMARK 500 19 ALA A 460 -39.41 -34.10 REMARK 500 19 ILE A 469 -70.54 -90.34 REMARK 500 19 ASN A 489 -32.85 -35.48 REMARK 500 19 GLN A 514 131.53 -171.24 REMARK 500 20 PRO A 431 1.42 -69.81 REMARK 500 20 LEU A 433 172.59 -51.86 REMARK 500 20 SER A 459 -37.05 -37.86 REMARK 500 20 ILE A 469 -70.56 -91.02 REMARK 500 20 GLN A 510 97.12 -64.11 REMARK 500 20 LYS A 511 117.05 -169.34 REMARK 500 20 GLN A 514 124.10 -173.49 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007011199.1 RELATED DB: TARGETDB
DBREF 1WHV A 430 516 UNP Q8VDG3 PARN_MOUSE 430 516
SEQADV 1WHV GLY A 423 UNP Q8VDG3 CLONING ARTIFACT SEQADV 1WHV SER A 424 UNP Q8VDG3 CLONING ARTIFACT SEQADV 1WHV SER A 425 UNP Q8VDG3 CLONING ARTIFACT SEQADV 1WHV GLY A 426 UNP Q8VDG3 CLONING ARTIFACT SEQADV 1WHV SER A 427 UNP Q8VDG3 CLONING ARTIFACT SEQADV 1WHV SER A 428 UNP Q8VDG3 CLONING ARTIFACT SEQADV 1WHV GLY A 429 UNP Q8VDG3 CLONING ARTIFACT SEQADV 1WHV SER A 517 UNP Q8VDG3 CLONING ARTIFACT SEQADV 1WHV GLY A 518 UNP Q8VDG3 CLONING ARTIFACT SEQADV 1WHV PRO A 519 UNP Q8VDG3 CLONING ARTIFACT SEQADV 1WHV SER A 520 UNP Q8VDG3 CLONING ARTIFACT SEQADV 1WHV SER A 521 UNP Q8VDG3 CLONING ARTIFACT SEQADV 1WHV GLY A 522 UNP Q8VDG3 CLONING ARTIFACT
SEQRES 1 A 100 GLY SER SER GLY SER SER GLY GLY PRO ASP LEU GLN PRO SEQRES 2 A 100 LYS ARG ASP HIS VAL LEU HIS VAL THR PHE PRO LYS GLU SEQRES 3 A 100 TRP LYS THR SER ASP LEU TYR GLN LEU PHE SER ALA PHE SEQRES 4 A 100 GLY ASN ILE GLN ILE SER TRP ILE ASP ASP THR SER ALA SEQRES 5 A 100 PHE VAL SER LEU SER GLN PRO GLU GLN VAL GLN ILE ALA SEQRES 6 A 100 VAL ASN THR SER LYS TYR ALA GLU SER TYR ARG ILE GLN SEQRES 7 A 100 THR TYR ALA GLU TYR VAL GLY LYS LYS GLN LYS GLY LYS SEQRES 8 A 100 GLN VAL LYS SER GLY PRO SER SER GLY
HELIX 1 1 THR A 451 PHE A 458 1 8 HELIX 2 2 PRO A 481 TYR A 493 1 13 HELIX 3 3 TYR A 502 LYS A 509 1 8
SHEET 1 A 4 GLN A 465 TRP A 468 0 SHEET 2 A 4 ALA A 474 SER A 477 -1 O PHE A 475 N SER A 467 SHEET 3 A 4 VAL A 440 THR A 444 -1 N LEU A 441 O VAL A 476 SHEET 4 A 4 ARG A 498 THR A 501 -1 O GLN A 500 N HIS A 442
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000