10 20 30 40 50 60 70 80 1WGQ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SUGAR BINDING PROTEIN 28-MAY-04 1WGQ
TITLE SOLUTION STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF TITLE 2 MOUSE ETHANOL DECREASED 4 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FYVE, RHOGEF AND PH DOMAIN CONTAINING 6; ETHANOL COMPND 3 DECREASED 4; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PLECKSTRIN HOMOLOGY DOMAIN; COMPND 6 SYNONYM: ETHANOL DECREASED 4 PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 4933427A08; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030212-46; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS PLECKSTRIN HOMOLOY DOMAIN, SIGNAL TRANSDUCTION, STRUCTURAL KEYWDS 2 GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 3 RSGI, SUGAR BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.LI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1WGQ 1 VERSN REVDAT 1 28-NOV-04 1WGQ 0
JRNL AUTH H.LI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PLECKSTRIN HOMOLOGY JRNL TITL 2 DOMAIN OF MOUSE ETHANOL DECREASED 4 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WGQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023561.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.22MM PLECKSTRIN HOMOLOGY REMARK 210 DOMAIN U-13C, 15N; 20MM REMARK 210 PHOSPHATE BUFFER NA (PH6.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.897, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 145.88 61.41 REMARK 500 1 SER A 6 87.67 -158.38 REMARK 500 1 LYS A 21 -0.55 78.29 REMARK 500 1 ALA A 40 -46.03 -132.31 REMARK 500 1 GLU A 43 43.93 -94.34 REMARK 500 1 LEU A 53 36.30 -92.75 REMARK 500 1 ASP A 63 171.40 59.21 REMARK 500 1 SER A 68 35.02 -161.85 REMARK 500 1 LYS A 76 -6.65 84.12 REMARK 500 1 ASP A 86 -78.21 -44.81 REMARK 500 1 ILE A 95 -70.49 -53.66 REMARK 500 1 SER A 104 16.24 -140.87 REMARK 500 2 SER A 2 -58.14 -132.58 REMARK 500 2 SER A 3 89.96 50.60 REMARK 500 2 SER A 5 -82.01 65.21 REMARK 500 2 SER A 6 81.95 71.46 REMARK 500 2 SER A 11 133.13 -172.66 REMARK 500 2 LYS A 32 -102.90 -76.26 REMARK 500 2 LYS A 34 19.49 56.33 REMARK 500 2 ALA A 40 -46.29 -135.18 REMARK 500 2 ASP A 63 156.02 71.52 REMARK 500 2 GLU A 67 -44.09 -130.29 REMARK 500 2 SER A 68 34.07 -151.59 REMARK 500 2 SER A 107 88.95 52.70 REMARK 500 3 SER A 3 169.07 179.91 REMARK 500 3 SER A 6 -53.48 -148.09 REMARK 500 3 SER A 8 155.76 -49.08 REMARK 500 3 SER A 11 148.57 -178.40 REMARK 500 3 ALA A 40 -46.13 -130.23 REMARK 500 3 GLU A 43 46.07 -101.64 REMARK 500 3 ASP A 44 170.36 -58.02 REMARK 500 3 PHE A 56 -177.12 -64.51 REMARK 500 3 ASP A 63 176.44 52.46 REMARK 500 3 SER A 68 30.47 -163.56 REMARK 500 3 LYS A 76 -55.40 75.38 REMARK 500 4 SER A 2 81.47 62.04 REMARK 500 4 SER A 6 -58.35 -140.30 REMARK 500 4 SER A 11 145.01 -171.84 REMARK 500 4 GLU A 43 53.22 -110.05 REMARK 500 4 LEU A 53 39.85 -93.08 REMARK 500 4 PHE A 56 178.61 -58.08 REMARK 500 4 GLU A 67 58.84 -142.07 REMARK 500 4 SER A 68 -25.71 158.72 REMARK 500 4 LYS A 76 -2.95 83.58 REMARK 500 4 ASP A 86 -74.92 -56.34 REMARK 500 5 SER A 2 124.83 178.97 REMARK 500 5 SER A 11 125.40 -172.46 REMARK 500 5 LYS A 21 -3.42 80.25 REMARK 500 5 ASN A 33 -77.62 67.11 REMARK 500 5 LYS A 34 17.61 -143.81 REMARK 500 5 GLU A 43 51.75 -104.05 REMARK 500 5 ASP A 44 175.45 -53.14 REMARK 500 5 LEU A 53 30.25 -92.98 REMARK 500 5 PHE A 56 179.67 -52.59 REMARK 500 5 ASP A 63 177.37 52.51 REMARK 500 5 SER A 66 -168.91 -105.88 REMARK 500 5 GLU A 67 -44.06 -130.43 REMARK 500 5 SER A 68 31.06 -146.97 REMARK 500 6 SER A 2 -56.81 -150.31 REMARK 500 6 SER A 20 -71.89 -105.66 REMARK 500 6 GLU A 43 30.82 -90.96 REMARK 500 6 ASP A 63 168.08 65.34 REMARK 500 6 GLU A 67 -44.88 -134.17 REMARK 500 6 SER A 68 32.05 -156.57 REMARK 500 6 LYS A 76 13.76 82.20 REMARK 500 6 ASP A 86 -71.72 -43.00 REMARK 500 6 SER A 104 17.13 -144.36 REMARK 500 6 SER A 108 86.11 66.06 REMARK 500 7 SER A 6 130.15 -174.85 REMARK 500 7 GLU A 43 54.27 -114.18 REMARK 500 7 LEU A 53 40.82 -91.36 REMARK 500 7 GLU A 67 -97.21 -105.38 REMARK 500 7 LYS A 76 2.91 81.01 REMARK 500 7 SER A 104 95.93 -165.77 REMARK 500 7 SER A 108 -59.22 -134.49 REMARK 500 8 SER A 3 122.39 -176.37 REMARK 500 8 SER A 8 170.24 63.13 REMARK 500 8 SER A 20 -67.67 -95.20 REMARK 500 8 ALA A 40 -45.81 -131.25 REMARK 500 8 GLU A 43 61.87 -115.96 REMARK 500 8 ASP A 63 179.81 -53.16 REMARK 500 8 GLU A 64 -72.79 -37.69 REMARK 500 8 SER A 66 102.56 -39.47 REMARK 500 8 GLU A 67 -95.84 -46.12 REMARK 500 8 LYS A 76 -5.06 82.98 REMARK 500 8 ASP A 87 -169.33 -119.91 REMARK 500 8 SER A 104 18.97 -147.11 REMARK 500 9 SER A 3 -57.40 176.59 REMARK 500 9 LYS A 21 40.38 -85.86 REMARK 500 9 ASN A 33 -79.72 63.24 REMARK 500 9 LYS A 34 17.41 -143.37 REMARK 500 9 GLU A 43 61.06 -112.74 REMARK 500 9 LEU A 53 30.62 -97.15 REMARK 500 9 PHE A 56 -177.67 -66.56 REMARK 500 9 ASP A 63 174.80 52.90 REMARK 500 9 SER A 68 109.99 -39.35 REMARK 500 9 LYS A 69 -35.70 175.17 REMARK 500 9 SER A 104 21.20 -151.08 REMARK 500 9 SER A 107 -60.21 -177.24 REMARK 500 10 SER A 5 89.98 50.02 REMARK 500 10 GLU A 43 59.95 -113.88 REMARK 500 10 LEU A 53 39.43 -91.21 REMARK 500 10 PHE A 56 175.45 -56.22 REMARK 500 10 SER A 104 19.27 -148.00 REMARK 500 10 SER A 107 160.90 63.90 REMARK 500 11 SER A 5 94.03 -174.10 REMARK 500 11 ASN A 33 -53.27 -171.38 REMARK 500 11 LYS A 34 21.91 -148.99 REMARK 500 11 SER A 42 -74.03 -62.51 REMARK 500 11 GLU A 43 53.32 -102.09 REMARK 500 11 PHE A 56 -179.31 -58.36 REMARK 500 11 LYS A 62 -88.75 -57.09 REMARK 500 11 ASP A 63 -2.50 83.07 REMARK 500 11 GLU A 64 120.48 68.88 REMARK 500 11 ASN A 65 -44.86 87.30 REMARK 500 11 SER A 68 45.58 -168.48 REMARK 500 11 LYS A 76 2.96 81.13 REMARK 500 11 ILE A 95 -70.43 -50.22 REMARK 500 11 SER A 107 87.20 -175.59 REMARK 500 11 SER A 108 168.23 63.81 REMARK 500 12 SER A 3 158.03 66.36 REMARK 500 12 SER A 8 151.06 -44.98 REMARK 500 12 MET A 10 123.43 -171.40 REMARK 500 12 SER A 11 -74.21 -147.00 REMARK 500 12 LEU A 54 102.98 -49.53 REMARK 500 12 ASP A 63 -170.85 64.62 REMARK 500 12 GLU A 64 -74.37 -49.21 REMARK 500 12 SER A 66 101.07 -36.14 REMARK 500 12 SER A 68 33.50 -167.67 REMARK 500 12 LYS A 76 2.58 80.77 REMARK 500 13 SER A 6 103.13 60.43 REMARK 500 13 GLU A 43 61.82 -108.52 REMARK 500 13 LEU A 53 32.91 -94.98 REMARK 500 13 PHE A 56 179.29 -52.50 REMARK 500 13 SER A 68 35.16 -147.18 REMARK 500 13 LYS A 76 13.20 59.79 REMARK 500 13 ILE A 95 -71.06 -52.45 REMARK 500 13 SER A 104 95.76 -167.14 REMARK 500 13 SER A 107 165.91 -44.40 REMARK 500 13 SER A 108 -60.11 -135.85 REMARK 500 14 SER A 20 -77.27 -65.80 REMARK 500 14 LYS A 32 -98.02 -86.69 REMARK 500 14 ALA A 41 -175.20 173.30 REMARK 500 14 LEU A 54 97.19 -50.23 REMARK 500 14 LYS A 62 -66.65 -90.62 REMARK 500 14 ASP A 63 159.16 71.63 REMARK 500 14 ASN A 65 -65.29 -90.19 REMARK 500 14 GLU A 67 -46.07 -137.46 REMARK 500 14 SER A 68 24.35 -155.49 REMARK 500 14 LYS A 76 -2.26 83.69 REMARK 500 14 SER A 104 97.37 -169.05 REMARK 500 15 SER A 3 -61.97 -151.44 REMARK 500 15 SER A 5 114.20 -161.55 REMARK 500 15 SER A 20 -65.91 -108.08 REMARK 500 15 GLU A 43 58.01 -117.78 REMARK 500 15 ASP A 63 168.78 55.22 REMARK 500 15 LYS A 76 -33.26 87.94 REMARK 500 15 ASP A 86 -74.53 -50.65 REMARK 500 15 VAL A 103 -168.06 -104.92 REMARK 500 15 SER A 108 129.26 -170.39 REMARK 500 16 SER A 5 158.67 -44.79 REMARK 500 16 SER A 8 178.17 51.54 REMARK 500 16 LYS A 21 39.86 -85.82 REMARK 500 16 LYS A 32 -84.72 -71.27 REMARK 500 16 ASN A 33 71.63 -115.51 REMARK 500 16 LYS A 34 17.45 59.49 REMARK 500 16 ALA A 41 172.94 176.84 REMARK 500 16 ASP A 63 179.27 68.26 REMARK 500 16 SER A 68 27.01 43.59 REMARK 500 16 LYS A 76 -1.97 82.25 REMARK 500 16 SER A 108 80.72 55.41 REMARK 500 17 SER A 5 117.53 -162.22 REMARK 500 17 SER A 6 -57.27 -123.29 REMARK 500 17 SER A 11 126.20 -179.57 REMARK 500 17 LYS A 21 47.50 -81.79 REMARK 500 17 LEU A 53 38.76 -96.41 REMARK 500 17 ASN A 65 -57.68 -175.22 REMARK 500 17 GLU A 67 -92.10 -40.79 REMARK 500 17 LYS A 69 -43.91 -164.29 REMARK 500 17 LYS A 76 6.67 81.29 REMARK 500 17 SER A 107 125.87 -172.91 REMARK 500 18 SER A 2 151.40 65.23 REMARK 500 18 SER A 8 151.50 -49.29 REMARK 500 18 SER A 20 164.18 -47.92 REMARK 500 18 LYS A 21 -44.54 80.20 REMARK 500 18 LYS A 32 -90.30 -80.52 REMARK 500 18 ASN A 33 71.00 -105.70 REMARK 500 18 GLU A 43 58.34 -111.95 REMARK 500 18 LEU A 53 34.37 -98.09 REMARK 500 18 PHE A 56 178.10 -50.94 REMARK 500 18 LYS A 62 -78.28 -55.27 REMARK 500 18 ASP A 63 157.56 65.01 REMARK 500 18 GLU A 64 -62.35 -103.90 REMARK 500 18 GLU A 67 98.04 75.65 REMARK 500 18 SER A 68 36.22 39.30 REMARK 500 18 LYS A 76 -19.43 86.96 REMARK 500 18 SER A 108 -57.42 -120.64 REMARK 500 19 THR A 9 -73.56 -41.90 REMARK 500 19 LYS A 32 -89.97 -80.62 REMARK 500 19 ASN A 33 78.80 -102.18 REMARK 500 19 GLU A 43 60.02 -116.68 REMARK 500 19 ASP A 63 131.77 -38.20 REMARK 500 19 GLU A 64 -53.69 82.65 REMARK 500 19 ASN A 65 -22.08 155.42 REMARK 500 19 SER A 66 130.06 -37.45 REMARK 500 19 SER A 68 39.10 39.20 REMARK 500 19 LYS A 76 0.57 82.01 REMARK 500 19 ILE A 95 -71.38 -52.01 REMARK 500 19 SER A 107 -53.16 -135.54 REMARK 500 19 SER A 108 97.13 -161.68 REMARK 500 20 SER A 5 -59.21 73.29 REMARK 500 20 LYS A 21 45.09 -83.08 REMARK 500 20 ASP A 44 161.04 -40.96 REMARK 500 20 LEU A 53 37.91 -97.59 REMARK 500 20 PHE A 56 -177.38 -64.48 REMARK 500 20 ASP A 63 -73.45 -106.77 REMARK 500 20 GLU A 64 117.86 177.05 REMARK 500 20 ASN A 65 -44.72 86.13 REMARK 500 20 SER A 66 -72.53 -42.54 REMARK 500 20 GLU A 67 76.61 68.04 REMARK 500 20 LYS A 76 3.60 82.37 REMARK 500 20 SER A 108 -57.44 -169.20 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007011951.1 RELATED DB: TARGETDB
DBREF 1WGQ A 8 103 UNP Q69ZL1 FGD6_MOUSE 1302 1397
SEQADV 1WGQ GLY A 1 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ SER A 2 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ SER A 3 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ GLY A 4 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ SER A 5 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ SER A 6 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ GLY A 7 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ SER A 104 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ GLY A 105 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ PRO A 106 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ SER A 107 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ SER A 108 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ GLY A 109 UNP Q69ZL1 CLONING ARTIFACT
SEQRES 1 A 109 GLY SER SER GLY SER SER GLY SER THR MET SER GLY TYR SEQRES 2 A 109 LEU TYR ARG SER LYS GLY SER LYS LYS PRO TRP LYS HIS SEQRES 3 A 109 LEU TRP PHE VAL ILE LYS ASN LYS VAL LEU TYR THR TYR SEQRES 4 A 109 ALA ALA SER GLU ASP VAL ALA ALA LEU GLU SER GLN PRO SEQRES 5 A 109 LEU LEU GLY PHE THR VAL THR LEU VAL LYS ASP GLU ASN SEQRES 6 A 109 SER GLU SER LYS VAL PHE GLN LEU LEU HIS LYS GLY MET SEQRES 7 A 109 VAL PHE TYR VAL PHE LYS ALA ASP ASP ALA HIS SER THR SEQRES 8 A 109 GLN ARG TRP ILE ASP ALA PHE GLN GLU GLY THR VAL SER SEQRES 9 A 109 GLY PRO SER SER GLY
HELIX 1 1 ALA A 88 THR A 102 1 15
SHEET 1 A 7 GLU A 49 PRO A 52 0 SHEET 2 A 7 VAL A 35 TYR A 39 -1 N THR A 38 O GLU A 49 SHEET 3 A 7 LYS A 25 LYS A 32 -1 N LYS A 32 O VAL A 35 SHEET 4 A 7 SER A 11 SER A 17 -1 N LEU A 14 O LEU A 27 SHEET 5 A 7 MET A 78 LYS A 84 -1 O VAL A 82 N SER A 17 SHEET 6 A 7 VAL A 70 HIS A 75 -1 N LEU A 73 O PHE A 80 SHEET 7 A 7 PHE A 56 LEU A 60 -1 N THR A 57 O LEU A 74
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000