10 20 30 40 50 60 70 80 1WGF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric Unit
HEADER TRANSCRIPTION 28-MAY-04 1WGF
TITLE SOLUTION STRUCTURE OF THE 4TH HMG-BOX OF MOUSE UBF1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPSTREAM BINDING FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HMG BOX DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1300010N03; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P031117-29; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS TRANSCRIPTION FACTOR, DNA BINDING, STRUCTURAL GENOMICS, KEYWDS 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1WGF 1 VERSN REVDAT 1 28-NOV-04 1WGF 0
JRNL AUTH K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 4TH HMG-BOX OF MOUSE UBF1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WGF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023552.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN, 20MM D-TRIS-HCL, REMARK 210 PH 7.0, 100MM NACL, 1MM D-DTT, REMARK 210 0.02% NAN3, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20020425, NMRVIEW 5, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 123.07 -177.33 REMARK 500 1 SER A 10 147.02 62.36 REMARK 500 1 GLN A 11 161.90 59.90 REMARK 500 1 GLU A 12 159.75 60.27 REMARK 500 1 GLU A 19 162.13 60.43 REMARK 500 1 GLU A 82 121.99 -176.16 REMARK 500 1 LYS A 84 149.77 62.32 REMARK 500 1 SER A 85 31.74 -150.13 REMARK 500 1 PRO A 87 92.69 -69.96 REMARK 500 2 SER A 10 75.85 -115.30 REMARK 500 2 LYS A 15 -48.17 -159.58 REMARK 500 2 LYS A 84 -59.01 -144.62 REMARK 500 2 SER A 89 -68.79 -96.09 REMARK 500 3 SER A 2 -62.00 -149.65 REMARK 500 3 SER A 3 105.15 60.58 REMARK 500 3 SER A 10 -73.57 -136.37 REMARK 500 3 SER A 81 42.86 -102.59 REMARK 500 3 GLU A 82 -42.60 -151.67 REMARK 500 3 ARG A 83 -62.66 75.42 REMARK 500 3 LYS A 84 -44.64 -172.34 REMARK 500 3 SER A 88 -73.52 -118.80 REMARK 500 4 SER A 10 -48.58 -142.61 REMARK 500 4 LYS A 15 -70.86 67.01 REMARK 500 4 VAL A 25 71.09 -113.28 REMARK 500 4 SER A 26 177.74 -59.38 REMARK 500 4 SER A 81 48.18 -90.69 REMARK 500 4 PRO A 87 -174.02 -53.09 REMARK 500 5 SER A 10 73.26 60.42 REMARK 500 5 GLN A 11 -44.86 -177.39 REMARK 500 5 GLU A 12 103.55 -176.03 REMARK 500 5 VAL A 25 75.61 -118.07 REMARK 500 5 GLU A 82 -44.89 -133.93 REMARK 500 5 LYS A 84 -61.17 -127.73 REMARK 500 5 PRO A 87 92.75 -69.46 REMARK 500 6 SER A 3 31.99 -153.01 REMARK 500 6 SER A 6 167.56 60.46 REMARK 500 6 GLU A 12 89.38 -165.43 REMARK 500 6 SER A 18 -175.84 -174.10 REMARK 500 6 GLU A 19 176.65 60.19 REMARK 500 6 PRO A 24 170.80 -53.33 REMARK 500 6 LEU A 62 175.73 -56.46 REMARK 500 6 SER A 81 35.04 -98.31 REMARK 500 6 SER A 88 170.01 60.98 REMARK 500 7 SER A 3 -170.80 60.61 REMARK 500 7 SER A 10 115.27 -170.67 REMARK 500 7 LYS A 15 162.91 60.27 REMARK 500 7 GLU A 19 -67.96 -136.57 REMARK 500 7 ARG A 23 109.77 -57.72 REMARK 500 7 LEU A 62 175.83 -58.52 REMARK 500 7 PRO A 87 77.28 -62.52 REMARK 500 8 SER A 2 -68.63 -124.33 REMARK 500 8 GLU A 12 171.59 60.85 REMARK 500 8 SER A 18 -78.62 64.48 REMARK 500 8 GLU A 19 174.50 61.10 REMARK 500 8 LEU A 62 178.35 -59.59 REMARK 500 9 SER A 5 95.47 -161.31 REMARK 500 9 SER A 6 -175.88 60.86 REMARK 500 9 LYS A 15 -50.14 -128.91 REMARK 500 9 LEU A 62 179.85 -59.78 REMARK 500 9 SER A 81 -70.93 -102.92 REMARK 500 9 ARG A 83 110.73 -176.04 REMARK 500 9 LYS A 84 -45.31 -166.26 REMARK 500 9 SER A 88 -46.36 -177.38 REMARK 500 10 SER A 2 116.08 -170.42 REMARK 500 10 SER A 3 -48.88 -134.70 REMARK 500 10 SER A 6 -74.26 -143.15 REMARK 500 10 SER A 10 133.70 64.23 REMARK 500 10 GLU A 82 -38.83 -176.72 REMARK 500 10 LYS A 84 145.53 -177.26 REMARK 500 10 SER A 85 -61.84 -140.29 REMARK 500 10 SER A 88 -54.92 -156.50 REMARK 500 10 SER A 89 -61.91 -160.98 REMARK 500 11 SER A 3 155.96 61.07 REMARK 500 11 PRO A 9 175.42 -51.20 REMARK 500 11 GLN A 11 -72.67 -125.80 REMARK 500 11 SER A 18 101.37 -59.96 REMARK 500 11 GLU A 19 107.22 60.19 REMARK 500 11 VAL A 25 79.00 -110.73 REMARK 500 11 ARG A 83 85.01 60.72 REMARK 500 11 LYS A 84 115.44 -167.56 REMARK 500 12 SER A 10 101.99 64.94 REMARK 500 12 GLN A 11 -57.86 -153.80 REMARK 500 12 SER A 18 116.70 -176.77 REMARK 500 12 SER A 81 44.43 -106.97 REMARK 500 12 ARG A 83 -64.74 -173.59 REMARK 500 12 SER A 85 87.28 -163.82 REMARK 500 13 SER A 6 85.46 60.27 REMARK 500 13 LYS A 8 87.26 61.00 REMARK 500 13 SER A 18 173.74 60.24 REMARK 500 13 ARG A 23 109.67 -56.95 REMARK 500 13 SER A 26 174.73 -57.45 REMARK 500 13 LEU A 62 177.36 -56.08 REMARK 500 13 GLU A 82 54.46 -94.88 REMARK 500 13 ARG A 83 42.13 -177.96 REMARK 500 13 LYS A 84 -48.37 -145.18 REMARK 500 13 SER A 88 96.87 60.25 REMARK 500 14 SER A 2 -49.17 -151.47 REMARK 500 14 SER A 3 80.38 -154.80 REMARK 500 14 LYS A 8 99.85 63.93 REMARK 500 14 GLU A 12 87.58 -151.48 REMARK 500 14 SER A 26 178.80 -58.90 REMARK 500 14 LEU A 62 176.83 -55.55 REMARK 500 14 SER A 85 -62.08 -128.50 REMARK 500 14 SER A 88 119.47 62.38 REMARK 500 15 SER A 5 -60.03 -99.36 REMARK 500 15 GLN A 11 -52.03 -136.77 REMARK 500 15 GLU A 12 31.23 -152.88 REMARK 500 15 GLU A 19 102.38 57.09 REMARK 500 15 LEU A 62 176.37 -54.29 REMARK 500 16 SER A 2 108.42 60.72 REMARK 500 16 SER A 5 138.62 63.80 REMARK 500 16 LYS A 15 32.99 -166.64 REMARK 500 16 ARG A 23 109.79 -162.62 REMARK 500 16 LEU A 62 170.26 -56.62 REMARK 500 16 PRO A 87 -170.42 -54.64 REMARK 500 17 SER A 5 -67.01 -95.15 REMARK 500 17 SER A 6 -61.51 -145.40 REMARK 500 17 GLU A 19 129.90 63.72 REMARK 500 17 VAL A 25 73.83 -103.39 REMARK 500 17 GLU A 82 60.58 -103.63 REMARK 500 17 ARG A 83 104.39 -172.98 REMARK 500 17 SER A 88 74.77 -67.77 REMARK 500 17 SER A 89 -46.99 -151.23 REMARK 500 18 PRO A 9 104.06 -52.05 REMARK 500 18 GLN A 11 -169.65 -163.33 REMARK 500 18 LYS A 15 30.57 -151.91 REMARK 500 18 PRO A 21 163.42 -50.00 REMARK 500 18 ARG A 23 115.22 -169.94 REMARK 500 18 VAL A 25 86.70 -152.26 REMARK 500 18 LEU A 62 179.13 -58.55 REMARK 500 18 ARG A 83 -71.54 68.89 REMARK 500 18 LYS A 84 93.93 49.81 REMARK 500 19 SER A 2 77.68 53.84 REMARK 500 19 SER A 3 88.79 -68.67 REMARK 500 19 SER A 10 -51.82 -167.34 REMARK 500 19 ARG A 23 109.81 -57.60 REMARK 500 19 SER A 26 171.94 -56.71 REMARK 500 19 SER A 89 -50.56 -154.76 REMARK 500 20 SER A 2 166.25 60.54 REMARK 500 20 LYS A 8 94.45 60.31 REMARK 500 20 PRO A 9 107.76 -49.74 REMARK 500 20 ARG A 83 -62.31 72.93 REMARK 500 20 LYS A 84 100.33 -50.40 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007011339.2 RELATED DB: TARGETDB
DBREF 1WGF A 8 84 UNP P25976 UBF1_MOUSE 357 433
SEQADV 1WGF GLY A 1 UNP P25976 CLONING ARTIFACT SEQADV 1WGF SER A 2 UNP P25976 CLONING ARTIFACT SEQADV 1WGF SER A 3 UNP P25976 CLONING ARTIFACT SEQADV 1WGF GLY A 4 UNP P25976 CLONING ARTIFACT SEQADV 1WGF SER A 5 UNP P25976 CLONING ARTIFACT SEQADV 1WGF SER A 6 UNP P25976 CLONING ARTIFACT SEQADV 1WGF GLY A 7 UNP P25976 CLONING ARTIFACT SEQADV 1WGF SER A 85 UNP P25976 CLONING ARTIFACT SEQADV 1WGF GLY A 86 UNP P25976 CLONING ARTIFACT SEQADV 1WGF PRO A 87 UNP P25976 CLONING ARTIFACT SEQADV 1WGF SER A 88 UNP P25976 CLONING ARTIFACT SEQADV 1WGF SER A 89 UNP P25976 CLONING ARTIFACT SEQADV 1WGF GLY A 90 UNP P25976 CLONING ARTIFACT
SEQRES 1 A 90 GLY SER SER GLY SER SER GLY LYS PRO SER GLN GLU GLY SEQRES 2 A 90 GLY LYS GLY GLY SER GLU LYS PRO LYS ARG PRO VAL SER SEQRES 3 A 90 ALA MET PHE ILE PHE SER GLU GLU LYS ARG ARG GLN LEU SEQRES 4 A 90 GLN GLU GLU ARG PRO GLU LEU SER GLU SER GLU LEU THR SEQRES 5 A 90 ARG LEU LEU ALA ARG MET TRP ASN ASP LEU SER GLU LYS SEQRES 6 A 90 LYS LYS ALA LYS TYR LYS ALA ARG GLU ALA ALA LEU LYS SEQRES 7 A 90 ALA GLN SER GLU ARG LYS SER GLY PRO SER SER GLY
HELIX 1 1 SER A 26 LYS A 35 1 10 HELIX 2 2 LYS A 35 ARG A 43 1 9 HELIX 3 3 SER A 47 LEU A 62 1 16 HELIX 4 4 SER A 63 LYS A 78 1 16
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000