10 20 30 40 50 60 70 80 1WGE - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 28-MAY-04 1WGE
TITLE SOLUTION STRUCTURE OF THE MOUSE DESR1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN 2610018L09RIK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 8-77; COMPND 5 SYNONYM: DIPHTHERIA TOXIN AND PSEUDOMONAS EXOTOXIN A COMPND 6 SENSITIVITY REQUIRED GENE 1, DESR1; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 2610018L09; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040126-37; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS DIPHTHAMIDE,CSL ZINC FINGER, ADP-RIBOSYLATING TOXIN, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAKANISHI,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1WGE 1 VERSN REVDAT 1 23-AUG-05 1WGE 0
JRNL AUTH T.NAKANISHI,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE MOUSE DESR1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WGE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023551.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.02MM DESR1 U-15N, 13C; 20MM REMARK 210 D-TRIS-HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 0.01MM ZNCL2; REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.8999, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 13 146.45 -171.64 REMARK 500 1 GLU A 27 51.80 35.56 REMARK 500 1 PRO A 34 8.72 -69.76 REMARK 500 1 PHE A 39 169.52 -49.65 REMARK 500 1 PRO A 56 6.83 -69.81 REMARK 500 1 CYS A 73 114.09 -37.86 REMARK 500 1 THR A 76 115.04 -38.10 REMARK 500 1 VAL A 77 159.99 -40.96 REMARK 500 1 PRO A 80 5.32 -69.68 REMARK 500 1 SER A 81 52.04 73.30 REMARK 500 2 PRO A 34 10.40 -69.71 REMARK 500 2 PRO A 56 7.06 -69.74 REMARK 500 2 GLU A 75 47.34 -83.26 REMARK 500 3 SER A 6 71.38 -109.42 REMARK 500 3 MET A 8 52.49 38.48 REMARK 500 3 ALA A 9 96.28 -63.76 REMARK 500 3 GLU A 27 54.72 34.39 REMARK 500 3 PRO A 34 15.12 -69.77 REMARK 500 3 PHE A 39 165.65 -46.70 REMARK 500 3 PRO A 56 7.10 -69.76 REMARK 500 3 VAL A 77 40.71 32.17 REMARK 500 3 PRO A 80 -176.70 -69.81 REMARK 500 4 SER A 2 45.98 -80.27 REMARK 500 4 PRO A 34 13.52 -69.73 REMARK 500 4 PHE A 39 167.03 -47.35 REMARK 500 4 PRO A 56 7.43 -69.82 REMARK 500 5 GLU A 27 51.99 34.33 REMARK 500 5 PRO A 34 12.99 -69.74 REMARK 500 5 PHE A 39 168.78 -47.26 REMARK 500 5 LYS A 43 -39.42 -38.46 REMARK 500 5 PRO A 56 7.27 -69.80 REMARK 500 5 CYS A 73 49.11 -80.84 REMARK 500 6 GLU A 27 52.94 34.21 REMARK 500 6 PRO A 34 15.32 -69.75 REMARK 500 6 PHE A 39 165.54 -48.04 REMARK 500 6 PRO A 56 6.64 -69.79 REMARK 500 6 ASP A 67 97.89 -68.80 REMARK 500 6 GLU A 75 77.36 -101.44 REMARK 500 6 VAL A 77 98.19 -64.63 REMARK 500 7 GLU A 27 47.89 37.14 REMARK 500 7 PRO A 34 10.98 -69.79 REMARK 500 7 PHE A 39 166.63 -48.80 REMARK 500 7 PRO A 56 7.23 -69.70 REMARK 500 8 SER A 3 42.09 -102.54 REMARK 500 8 PRO A 34 15.11 -69.74 REMARK 500 8 PHE A 39 167.16 -49.29 REMARK 500 8 PRO A 56 7.48 -69.68 REMARK 500 8 SER A 59 31.39 70.43 REMARK 500 8 GLU A 75 131.49 -39.08 REMARK 500 8 SER A 78 104.71 -53.01 REMARK 500 9 PRO A 34 12.41 -69.81 REMARK 500 9 PHE A 39 167.47 -49.62 REMARK 500 9 PRO A 56 7.73 -69.74 REMARK 500 9 THR A 76 47.26 34.14 REMARK 500 9 PRO A 80 -174.06 -69.79 REMARK 500 9 SER A 81 140.13 -38.42 REMARK 500 10 GLU A 27 50.78 36.37 REMARK 500 10 PRO A 34 10.40 -69.82 REMARK 500 10 GLU A 50 -73.60 -89.79 REMARK 500 10 PRO A 56 6.80 -69.80 REMARK 500 10 THR A 76 97.68 -62.98 REMARK 500 11 GLU A 27 51.09 34.15 REMARK 500 11 PRO A 34 16.94 -69.81 REMARK 500 11 PHE A 39 167.83 -46.72 REMARK 500 11 PRO A 56 7.30 -69.73 REMARK 500 11 SER A 57 -70.16 -118.22 REMARK 500 11 CYS A 73 89.61 -60.13 REMARK 500 11 GLU A 75 42.43 -108.80 REMARK 500 11 SER A 81 139.45 -173.20 REMARK 500 12 PRO A 34 14.71 -69.82 REMARK 500 12 PHE A 39 168.31 -48.55 REMARK 500 12 LYS A 43 -38.45 -39.98 REMARK 500 12 GLU A 50 -75.20 -85.96 REMARK 500 12 PRO A 56 7.09 -69.80 REMARK 500 12 GLU A 75 88.51 -62.89 REMARK 500 12 PRO A 80 93.49 -69.76 REMARK 500 12 SER A 82 -60.16 -91.28 REMARK 500 13 MET A 8 112.97 -162.54 REMARK 500 13 GLU A 27 53.89 38.36 REMARK 500 13 PRO A 34 15.53 -69.84 REMARK 500 13 PRO A 56 7.71 -69.75 REMARK 500 13 SER A 81 79.61 -100.88 REMARK 500 14 GLU A 27 49.29 36.49 REMARK 500 14 PRO A 34 14.14 -69.78 REMARK 500 14 PHE A 39 168.00 -48.64 REMARK 500 14 PRO A 56 7.34 -69.79 REMARK 500 14 CYS A 73 108.89 -34.33 REMARK 500 14 THR A 76 160.79 -40.46 REMARK 500 15 GLU A 27 54.61 38.55 REMARK 500 15 PRO A 34 17.07 -69.73 REMARK 500 15 PHE A 39 166.70 -47.48 REMARK 500 15 PRO A 56 6.71 -69.79 REMARK 500 15 VAL A 77 50.89 34.88 REMARK 500 15 PRO A 80 94.79 -69.82 REMARK 500 15 SER A 81 46.86 -79.86 REMARK 500 16 GLU A 27 54.95 36.71 REMARK 500 16 PRO A 34 14.03 -69.79 REMARK 500 16 PHE A 39 164.24 -49.92 REMARK 500 16 PRO A 56 7.64 -69.72 REMARK 500 16 SER A 81 177.64 -59.18 REMARK 500 17 GLU A 27 54.30 34.08 REMARK 500 17 PRO A 34 15.70 -69.77 REMARK 500 17 PHE A 39 166.99 -47.26 REMARK 500 17 PRO A 56 7.31 -69.76 REMARK 500 17 SER A 57 -67.22 -120.27 REMARK 500 17 CYS A 73 152.73 -36.36 REMARK 500 17 SER A 82 -31.46 -130.29 REMARK 500 18 SER A 3 41.90 -85.58 REMARK 500 18 SER A 5 42.14 -81.31 REMARK 500 18 ASP A 13 140.51 -174.61 REMARK 500 18 PRO A 34 10.91 -69.86 REMARK 500 18 PHE A 39 168.50 -48.75 REMARK 500 18 PRO A 56 7.80 -69.75 REMARK 500 19 ALA A 9 97.84 -60.62 REMARK 500 19 GLU A 27 54.99 36.77 REMARK 500 19 PRO A 34 17.16 -69.78 REMARK 500 19 PRO A 56 6.93 -69.76 REMARK 500 20 SER A 6 107.28 -40.60 REMARK 500 20 ALA A 9 95.58 -59.88 REMARK 500 20 GLU A 27 53.23 34.72 REMARK 500 20 PRO A 34 15.19 -69.79 REMARK 500 20 PHE A 39 165.72 -48.71 REMARK 500 20 PRO A 56 7.16 -69.82 REMARK 500 20 SER A 82 41.83 -105.57 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 33 SG REMARK 620 2 CYS A 35 SG 112.6 REMARK 620 3 CYS A 55 SG 111.4 109.5 REMARK 620 4 CYS A 58 SG 105.5 102.6 115.1 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007013212.1 RELATED DB: TARGETDB
DBREF 1WGE A 8 77 UNP Q8K0W9 ZCSL2_MOUSE 1 70
SEQADV 1WGE GLY A 1 UNP Q8K0W9 CLONING ARTIFACT SEQADV 1WGE SER A 2 UNP Q8K0W9 CLONING ARTIFACT SEQADV 1WGE SER A 3 UNP Q8K0W9 CLONING ARTIFACT SEQADV 1WGE GLY A 4 UNP Q8K0W9 CLONING ARTIFACT SEQADV 1WGE SER A 5 UNP Q8K0W9 CLONING ARTIFACT SEQADV 1WGE SER A 6 UNP Q8K0W9 CLONING ARTIFACT SEQADV 1WGE GLY A 7 UNP Q8K0W9 CLONING ARTIFACT SEQADV 1WGE SER A 78 UNP Q8K0W9 CLONING ARTIFACT SEQADV 1WGE GLY A 79 UNP Q8K0W9 CLONING ARTIFACT SEQADV 1WGE PRO A 80 UNP Q8K0W9 CLONING ARTIFACT SEQADV 1WGE SER A 81 UNP Q8K0W9 CLONING ARTIFACT SEQADV 1WGE SER A 82 UNP Q8K0W9 CLONING ARTIFACT SEQADV 1WGE GLY A 83 UNP Q8K0W9 CLONING ARTIFACT
SEQRES 1 A 83 GLY SER SER GLY SER SER GLY MET ALA VAL PHE HIS ASP SEQRES 2 A 83 GLU VAL GLU ILE GLU ASP PHE GLN TYR ASP GLU ASP SER SEQRES 3 A 83 GLU THR TYR PHE TYR PRO CYS PRO CYS GLY ASP ASN PHE SEQRES 4 A 83 ALA ILE THR LYS GLU ASP LEU GLU ASN GLY GLU ASP VAL SEQRES 5 A 83 ALA THR CYS PRO SER CYS SER LEU ILE ILE LYS VAL ILE SEQRES 6 A 83 TYR ASP LYS ASP GLN PHE MET CYS GLY GLU THR VAL SER SEQRES 7 A 83 GLY PRO SER SER GLY
HET ZN A 201 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 ILE A 17 ASP A 19 5 3 HELIX 2 2 LYS A 43 ASN A 48 1 6 HELIX 3 3 LYS A 68 MET A 72 1 5
SHEET 1 A 3 ASP A 13 GLU A 16 0 SHEET 2 A 3 ILE A 61 ILE A 65 1 O ILE A 65 N VAL A 15 SHEET 3 A 3 VAL A 52 THR A 54 -1 N ALA A 53 O ILE A 62 SHEET 1 B 2 THR A 28 PRO A 32 0 SHEET 2 B 2 PHE A 39 THR A 42 -1 O PHE A 39 N TYR A 31
LINK ZN ZN A 201 SG CYS A 33 1555 1555 2.29 LINK ZN ZN A 201 SG CYS A 35 1555 1555 2.30 LINK ZN ZN A 201 SG CYS A 55 1555 1555 2.32 LINK ZN ZN A 201 SG CYS A 58 1555 1555 2.33
SITE 1 AC1 4 CYS A 33 CYS A 35 CYS A 55 CYS A 58
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000