10 20 30 40 50 60 70 80 1WG2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 27-MAY-04 1WG2
TITLE SOLUTION STRUCTURE OF ZF-AN1 DOMAIN FROM ARABIDOPSIS TITLE 2 THALIANA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER (AN1-LIKE) FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-AN1 DOMAIN; COMPND 5 SYNONYM: HYPOTHETICAL ZINC-FINGER PROTEIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: RIKEN CDNA RAFL09-11-C11; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030421-16; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS ZINC FINGER, AN1, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 2 INITIATIVE, RSGI, STRUCTURAL GENOMICS, DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.SUETAKE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1WG2 1 VERSN REVDAT 1 27-NOV-04 1WG2 0
JRNL AUTH T.SUETAKE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF ZF-AN1 DOMAIN FROM JRNL TITL 2 ARABIDOPSIS THALIANA JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.31 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WG2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023541.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.21MM 13C, 15N-LABELED REMARK 210 PROTEIN; 0.1MM ZNCL2; 20MM D- REMARK 210 TRIS-HCL; 100MM NACL; 1MM D10- REMARK 210 DTT;0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 2002045, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.860, REMARK 210 CYANA 2.0.31 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATION, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 11 -175.83 -69.75 REMARK 500 1 VAL A 12 44.47 -81.21 REMARK 500 1 PRO A 14 -176.10 -69.76 REMARK 500 1 SER A 20 -41.98 -134.29 REMARK 500 1 CYS A 39 30.24 -91.79 REMARK 500 1 HIS A 48 124.93 -172.25 REMARK 500 1 GLU A 49 91.49 -42.53 REMARK 500 1 PHE A 52 138.39 -36.92 REMARK 500 1 LYS A 55 141.19 -34.70 REMARK 500 1 GLU A 56 170.62 -52.28 REMARK 500 1 SER A 59 170.74 -55.36 REMARK 500 2 ARG A 10 151.68 -48.03 REMARK 500 2 PRO A 11 -166.84 -69.78 REMARK 500 2 VAL A 12 33.67 -84.23 REMARK 500 2 SER A 20 -40.09 -134.14 REMARK 500 2 CYS A 39 34.92 -96.72 REMARK 500 2 HIS A 48 134.76 -172.83 REMARK 500 2 GLU A 49 88.65 -47.99 REMARK 500 2 SER A 51 35.90 -92.17 REMARK 500 2 ASP A 53 89.70 -58.62 REMARK 500 2 VAL A 57 99.76 -41.35 REMARK 500 2 SER A 59 105.38 -42.15 REMARK 500 3 SER A 2 89.18 -67.54 REMARK 500 3 SER A 5 46.77 -82.14 REMARK 500 3 PRO A 11 -163.42 -69.80 REMARK 500 3 VAL A 12 46.51 -76.83 REMARK 500 3 ASN A 16 86.22 -53.82 REMARK 500 3 SER A 20 -43.12 -134.77 REMARK 500 3 CYS A 39 34.55 -93.09 REMARK 500 3 HIS A 48 126.44 -171.60 REMARK 500 3 GLU A 49 89.64 -45.41 REMARK 500 3 SER A 51 33.46 -86.59 REMARK 500 3 LYS A 55 108.00 -54.00 REMARK 500 4 ARG A 10 150.50 -40.90 REMARK 500 4 PRO A 11 -163.93 -69.80 REMARK 500 4 VAL A 12 39.12 -82.18 REMARK 500 4 SER A 20 -39.55 -133.62 REMARK 500 4 LYS A 24 109.52 -42.24 REMARK 500 4 CYS A 39 37.24 -98.68 REMARK 500 4 HIS A 48 134.09 -172.28 REMARK 500 4 GLU A 49 87.65 -49.06 REMARK 500 4 SER A 51 33.58 -93.20 REMARK 500 4 ASP A 53 68.94 -104.22 REMARK 500 5 PRO A 8 92.75 -69.76 REMARK 500 5 PRO A 11 -166.23 -69.81 REMARK 500 5 VAL A 12 34.96 -84.17 REMARK 500 5 ASN A 16 84.64 -54.37 REMARK 500 5 ARG A 17 145.28 -171.66 REMARK 500 5 SER A 20 -41.91 -134.14 REMARK 500 5 LYS A 24 119.19 -36.66 REMARK 500 5 CYS A 39 36.24 -94.60 REMARK 500 5 HIS A 48 125.65 -174.02 REMARK 500 5 GLU A 49 91.11 -42.89 REMARK 500 5 SER A 51 36.90 -95.10 REMARK 500 6 PRO A 11 -163.86 -69.77 REMARK 500 6 VAL A 12 38.60 -85.75 REMARK 500 6 SER A 20 -40.23 -134.93 REMARK 500 6 CYS A 39 32.68 -94.98 REMARK 500 6 GLU A 49 89.54 -46.03 REMARK 500 6 SER A 51 33.98 -91.61 REMARK 500 7 SER A 3 -61.55 -122.11 REMARK 500 7 PRO A 8 91.46 -69.74 REMARK 500 7 PRO A 11 -167.05 -69.78 REMARK 500 7 VAL A 12 49.59 -77.10 REMARK 500 7 ARG A 13 63.94 -117.21 REMARK 500 7 PRO A 14 5.01 -69.83 REMARK 500 7 SER A 20 -43.25 -134.58 REMARK 500 7 LYS A 24 116.70 -37.39 REMARK 500 7 CYS A 39 35.13 -96.17 REMARK 500 7 GLU A 49 48.52 33.46 REMARK 500 7 PHE A 52 104.98 -37.34 REMARK 500 7 ASP A 53 91.17 -68.11 REMARK 500 7 LYS A 55 34.95 32.89 REMARK 500 7 GLU A 56 109.58 -46.31 REMARK 500 7 SER A 62 88.01 -68.29 REMARK 500 8 PRO A 11 -173.55 -69.75 REMARK 500 8 PRO A 14 -178.96 -69.80 REMARK 500 8 SER A 20 -43.67 -134.64 REMARK 500 8 CYS A 39 33.03 -95.31 REMARK 500 8 GLU A 49 47.04 32.72 REMARK 500 8 PHE A 52 136.99 -39.29 REMARK 500 8 GLU A 56 101.48 -56.34 REMARK 500 9 SER A 9 41.74 37.69 REMARK 500 9 PRO A 11 -163.20 -69.71 REMARK 500 9 VAL A 12 47.28 -75.34 REMARK 500 9 ASN A 16 83.33 -54.93 REMARK 500 9 SER A 20 -40.69 -134.64 REMARK 500 9 CYS A 39 37.21 -98.48 REMARK 500 9 HIS A 48 128.13 -172.76 REMARK 500 9 GLU A 49 90.53 -43.68 REMARK 500 9 PHE A 52 105.68 -35.08 REMARK 500 9 ASP A 53 84.46 -60.33 REMARK 500 9 SER A 62 45.16 -80.82 REMARK 500 10 PRO A 8 99.83 -69.79 REMARK 500 10 SER A 9 149.99 -174.99 REMARK 500 10 PRO A 11 -165.05 -69.74 REMARK 500 10 VAL A 12 42.62 -80.44 REMARK 500 10 PRO A 14 -166.82 -69.82 REMARK 500 10 PHE A 19 20.28 -79.55 REMARK 500 10 SER A 20 -33.77 -133.02 REMARK 500 10 CYS A 39 37.44 -94.34 REMARK 500 10 HIS A 48 134.62 -172.74 REMARK 500 10 GLU A 49 87.23 -49.43 REMARK 500 10 SER A 51 41.35 -109.11 REMARK 500 10 PRO A 61 86.59 -69.73 REMARK 500 11 PRO A 11 -168.33 -69.81 REMARK 500 11 SER A 20 -39.69 -134.42 REMARK 500 11 CYS A 39 32.55 -95.96 REMARK 500 11 HIS A 48 129.26 -172.07 REMARK 500 11 GLU A 49 89.01 -45.91 REMARK 500 11 SER A 51 35.85 -94.84 REMARK 500 12 PRO A 11 -163.73 -69.74 REMARK 500 12 VAL A 12 46.05 -77.36 REMARK 500 12 PRO A 14 -175.78 -69.78 REMARK 500 12 SER A 20 -37.98 -134.39 REMARK 500 12 CYS A 39 36.90 -98.78 REMARK 500 12 HIS A 48 149.53 -175.03 REMARK 500 12 GLU A 49 72.75 -64.69 REMARK 500 12 SER A 51 34.55 38.39 REMARK 500 13 ARG A 10 140.93 -39.93 REMARK 500 13 PRO A 11 -161.79 -69.77 REMARK 500 13 VAL A 12 46.64 -74.43 REMARK 500 13 SER A 20 -43.76 -134.35 REMARK 500 13 LYS A 24 117.61 -37.14 REMARK 500 13 CYS A 39 33.56 -94.20 REMARK 500 13 HIS A 48 128.07 -172.51 REMARK 500 13 GLU A 49 90.59 -44.04 REMARK 500 13 PHE A 52 128.75 -34.36 REMARK 500 13 SER A 59 96.72 -62.30 REMARK 500 13 PRO A 61 2.91 -69.74 REMARK 500 14 PRO A 8 1.59 -69.75 REMARK 500 14 PRO A 11 -169.19 -69.73 REMARK 500 14 VAL A 12 47.72 -83.68 REMARK 500 14 PRO A 14 -176.50 -69.80 REMARK 500 14 ASN A 16 83.32 -54.90 REMARK 500 14 SER A 20 -41.80 -134.14 REMARK 500 14 MET A 28 39.15 -96.65 REMARK 500 14 CYS A 39 36.22 -99.01 REMARK 500 14 GLU A 49 45.58 33.89 REMARK 500 14 PHE A 52 149.21 -39.02 REMARK 500 14 VAL A 57 147.62 -33.82 REMARK 500 14 SER A 63 42.32 -84.40 REMARK 500 15 PRO A 11 -167.88 -69.72 REMARK 500 15 VAL A 12 49.48 -81.30 REMARK 500 15 PRO A 14 -163.92 -69.75 REMARK 500 15 SER A 20 -41.07 -133.23 REMARK 500 15 CYS A 39 40.21 -98.52 REMARK 500 15 GLU A 49 52.80 30.40 REMARK 500 15 ASP A 53 61.72 -104.69 REMARK 500 15 GLU A 56 42.12 33.71 REMARK 500 15 VAL A 57 99.11 -61.65 REMARK 500 15 PRO A 61 1.21 -69.71 REMARK 500 15 SER A 62 86.19 -52.40 REMARK 500 16 SER A 9 145.86 -173.02 REMARK 500 16 PRO A 11 -164.29 -69.74 REMARK 500 16 VAL A 12 42.14 -82.49 REMARK 500 16 SER A 20 -39.00 -134.58 REMARK 500 16 CYS A 39 35.23 -96.78 REMARK 500 16 HIS A 48 129.92 -171.58 REMARK 500 16 GLU A 49 90.38 -44.89 REMARK 500 16 SER A 51 39.43 -92.90 REMARK 500 16 LYS A 55 51.63 37.36 REMARK 500 16 GLU A 56 79.41 -114.01 REMARK 500 16 VAL A 57 41.95 -84.01 REMARK 500 16 SER A 62 131.56 -170.26 REMARK 500 16 SER A 63 136.38 -38.30 REMARK 500 17 PRO A 8 97.78 -69.80 REMARK 500 17 PRO A 11 -163.76 -69.79 REMARK 500 17 VAL A 12 45.45 -83.72 REMARK 500 17 ASN A 16 81.57 -57.91 REMARK 500 17 SER A 20 -42.11 -135.00 REMARK 500 17 CYS A 39 34.69 -96.67 REMARK 500 17 GLU A 49 53.12 31.10 REMARK 500 17 ASP A 53 88.87 -53.84 REMARK 500 17 PRO A 61 85.54 -69.77 REMARK 500 18 SER A 9 174.18 -54.73 REMARK 500 18 PRO A 11 -170.47 -69.77 REMARK 500 18 VAL A 12 41.23 -81.15 REMARK 500 18 SER A 20 -38.64 -134.19 REMARK 500 18 CYS A 39 35.49 -96.78 REMARK 500 18 GLU A 49 86.12 -50.18 REMARK 500 19 PRO A 8 86.36 -69.74 REMARK 500 19 PRO A 11 -171.31 -69.74 REMARK 500 19 VAL A 12 45.16 -80.27 REMARK 500 19 ASN A 16 79.60 -100.85 REMARK 500 19 SER A 20 -44.08 -134.70 REMARK 500 19 CYS A 39 33.77 -97.54 REMARK 500 19 ASP A 53 58.31 -102.09 REMARK 500 19 LYS A 55 108.98 -42.48 REMARK 500 19 GLU A 56 39.98 -84.96 REMARK 500 19 PRO A 61 91.16 -69.79 REMARK 500 19 SER A 62 156.78 -42.14 REMARK 500 20 SER A 2 146.88 -172.55 REMARK 500 20 SER A 3 147.21 -172.94 REMARK 500 20 PRO A 8 99.18 -69.81 REMARK 500 20 PRO A 11 -168.61 -69.75 REMARK 500 20 ASN A 16 78.22 -57.46 REMARK 500 20 SER A 20 -43.74 -134.00 REMARK 500 20 CYS A 39 33.14 -93.23 REMARK 500 20 HIS A 48 126.64 -170.94 REMARK 500 20 GLU A 49 90.09 -43.62 REMARK 500 20 SER A 51 33.90 -88.63 REMARK 500 20 PRO A 61 11.24 -69.76 REMARK 500 20 SER A 62 -47.40 -28.98 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 CYS A 21 SG 93.4 REMARK 620 3 CYS A 39 SG 119.0 117.7 REMARK 620 4 HIS A 42 ND1 86.1 102.6 129.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 32 SG REMARK 620 2 CYS A 34 SG 90.6 REMARK 620 3 HIS A 48 NE2 122.2 111.0 REMARK 620 4 CYS A 50 SG 101.6 117.3 112.7 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ATR001009308.1 RELATED DB: TARGETDB
DBREF 1WG2 A 8 58 UNP Q9SZ69 ZF2N3_ARATH 106 156
SEQADV 1WG2 GLY A 1 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 SER A 2 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 SER A 3 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 GLY A 4 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 SER A 5 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 SER A 6 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 GLY A 7 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 SER A 59 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 GLY A 60 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 PRO A 61 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 SER A 62 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 SER A 63 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 GLY A 64 UNP Q9SZ69 CLONING ARTIFACT
SEQRES 1 A 64 GLY SER SER GLY SER SER GLY PRO SER ARG PRO VAL ARG SEQRES 2 A 64 PRO ASN ASN ARG CYS PHE SER CYS ASN LYS LYS VAL GLY SEQRES 3 A 64 VAL MET GLY PHE LYS CYS LYS CYS GLY SER THR PHE CYS SEQRES 4 A 64 GLY SER HIS ARG TYR PRO GLU LYS HIS GLU CYS SER PHE SEQRES 5 A 64 ASP PHE LYS GLU VAL GLY SER GLY PRO SER SER GLY
HET ZN A 200 1 HET ZN A 400 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
SHEET 1 A 2 PHE A 30 LYS A 31 0 SHEET 2 A 2 THR A 37 PHE A 38 -1 O PHE A 38 N PHE A 30
LINK ZN ZN A 200 SG CYS A 18 1555 1555 2.26 LINK ZN ZN A 200 SG CYS A 21 1555 1555 2.34 LINK ZN ZN A 200 SG CYS A 39 1555 1555 2.25 LINK ZN ZN A 200 ND1 HIS A 42 1555 1555 2.01 LINK ZN ZN A 400 SG CYS A 32 1555 1555 2.35 LINK ZN ZN A 400 SG CYS A 34 1555 1555 2.35 LINK ZN ZN A 400 NE2 HIS A 48 1555 1555 2.05 LINK ZN ZN A 400 SG CYS A 50 1555 1555 2.33
SITE 1 AC1 4 CYS A 18 CYS A 21 CYS A 39 HIS A 42 SITE 1 AC2 4 CYS A 32 CYS A 34 HIS A 48 CYS A 50
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000