10 20 30 40 50 60 70 80 1WFZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL TRANSPORT 27-MAY-04 1WFZ
TITLE SOLUTION STRUCTURE OF IRON-SULFUR CLUSTER PROTEIN U (ISCU)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROGEN FIXATION CLUSTER-LIKE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ISCU; COMPND 5 SYNONYM: IRON-SULFUR CLUSTER PROTEIN U; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 2300003J05; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P020826-02; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS IRON-SULFUR CLUSTER BIOSYNTHESIS, THREE CONSERVED CYS, KEYWDS 2 STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 3 INITIATIVE, RSGI, METAL TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAKANISHI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 1WFZ 1 VERSN REVDAT 1 27-NOV-04 1WFZ 0
JRNL AUTH T.NAKANISHI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF IRON-SULFUR CLUSTER PROTEIN JRNL TITL 2 U (ISCU) JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WFZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023538.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.12MM ISCU DOMAIN U-15N, REMARK 210 13C; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 10MM D-DTT; 0.02% NAN3; REMARK 210 0.01MM ZNCL2; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.870, CYANA 2.0.17 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 95.92 -69.15 REMARK 500 1 GLU A 8 38.16 37.63 REMARK 500 1 ASN A 9 140.25 -34.44 REMARK 500 1 PRO A 10 -164.45 -69.70 REMARK 500 1 ASP A 17 101.25 -54.25 REMARK 500 1 SER A 61 -33.84 -34.95 REMARK 500 1 HIS A 101 -37.24 -38.91 REMARK 500 1 ALA A 113 -71.24 -60.34 REMARK 500 2 SER A 2 41.77 -95.07 REMARK 500 2 GLU A 8 101.35 -42.84 REMARK 500 2 PRO A 10 -179.76 -69.70 REMARK 500 2 ASN A 12 78.11 -62.55 REMARK 500 2 CYS A 59 177.18 -59.90 REMARK 500 2 SER A 61 -34.10 -34.82 REMARK 500 2 HIS A 101 -37.39 -37.77 REMARK 500 2 ALA A 113 -70.44 -53.19 REMARK 500 2 ALA A 115 -70.32 -45.80 REMARK 500 2 SER A 123 -175.05 -174.26 REMARK 500 2 PRO A 127 -173.10 -69.75 REMARK 500 3 VAL A 13 112.36 -38.74 REMARK 500 3 SER A 15 118.64 -169.67 REMARK 500 3 SER A 61 -30.16 -36.98 REMARK 500 3 SER A 65 -37.00 -39.79 REMARK 500 3 SER A 129 81.32 -65.89 REMARK 500 4 ARG A 11 -68.39 -95.16 REMARK 500 4 SER A 61 -33.81 -35.19 REMARK 500 4 ALA A 90 -37.78 -36.04 REMARK 500 4 HIS A 101 -31.87 -38.11 REMARK 500 4 LYS A 124 -43.75 -132.60 REMARK 500 5 PRO A 10 -168.70 -69.74 REMARK 500 5 SER A 15 118.12 -32.20 REMARK 500 5 ASP A 17 101.21 -55.11 REMARK 500 5 SER A 61 -37.75 -35.05 REMARK 500 5 ALA A 90 -37.38 -38.15 REMARK 500 5 SER A 125 100.91 -39.48 REMARK 500 6 SER A 5 127.47 -170.43 REMARK 500 6 SER A 15 140.55 -172.06 REMARK 500 6 SER A 61 -34.07 -35.22 REMARK 500 6 SER A 65 -32.43 -38.59 REMARK 500 6 SER A 67 -29.17 -39.60 REMARK 500 6 HIS A 101 -36.72 -37.84 REMARK 500 6 ALA A 113 -72.01 -58.37 REMARK 500 6 LYS A 124 45.30 -85.18 REMARK 500 6 PRO A 127 86.46 -69.76 REMARK 500 7 PRO A 10 -175.04 -69.71 REMARK 500 7 ASN A 12 89.78 -66.16 REMARK 500 7 SER A 61 -32.49 -34.90 REMARK 500 7 ALA A 64 -70.15 -65.70 REMARK 500 7 HIS A 101 -27.24 -38.44 REMARK 500 7 ALA A 113 -74.53 -58.68 REMARK 500 7 ALA A 115 -70.98 -42.92 REMARK 500 7 SER A 123 102.76 -52.54 REMARK 500 7 SER A 125 42.05 34.38 REMARK 500 8 PRO A 10 -164.69 -69.81 REMARK 500 8 ASN A 12 41.79 71.95 REMARK 500 8 ASP A 17 101.80 -57.97 REMARK 500 8 SER A 61 -28.34 -37.98 REMARK 500 8 HIS A 101 -34.01 -38.06 REMARK 500 8 ASP A 108 -39.38 -39.20 REMARK 500 8 ALA A 113 -75.04 -58.64 REMARK 500 8 PRO A 127 4.34 -69.75 REMARK 500 9 ARG A 11 -51.78 -121.71 REMARK 500 9 ASN A 12 -39.67 -35.20 REMARK 500 9 SER A 15 129.11 -174.87 REMARK 500 9 ALA A 64 -70.02 -64.11 REMARK 500 9 SER A 67 -37.47 -39.09 REMARK 500 9 HIS A 101 -33.55 -38.01 REMARK 500 9 ALA A 113 -71.45 -57.05 REMARK 500 9 ALA A 115 -70.12 -42.46 REMARK 500 9 PRO A 127 88.07 -69.75 REMARK 500 9 SER A 128 43.37 -96.91 REMARK 500 9 SER A 129 42.21 38.08 REMARK 500 10 SER A 61 -38.66 -36.01 REMARK 500 10 ALA A 64 -70.08 -63.32 REMARK 500 10 ALA A 113 -71.22 -54.18 REMARK 500 10 LYS A 124 41.20 -106.12 REMARK 500 10 SER A 128 -62.15 -125.99 REMARK 500 11 PRO A 10 -172.36 -69.76 REMARK 500 11 ARG A 11 -63.44 -122.00 REMARK 500 11 ASN A 12 80.22 -63.18 REMARK 500 11 SER A 20 173.56 -58.66 REMARK 500 11 CYS A 59 -175.38 -58.62 REMARK 500 11 SER A 61 -31.26 -35.42 REMARK 500 11 THR A 70 -19.71 -46.36 REMARK 500 11 HIS A 101 -38.16 -38.66 REMARK 500 11 ALA A 113 -71.04 -53.88 REMARK 500 11 LYS A 124 112.95 -164.37 REMARK 500 11 SER A 125 -51.84 -133.10 REMARK 500 12 PRO A 10 -171.57 -69.78 REMARK 500 12 ARG A 11 -53.95 -133.30 REMARK 500 12 SER A 15 112.62 -162.05 REMARK 500 12 ASN A 22 -34.95 -35.65 REMARK 500 12 SER A 61 -32.59 -36.07 REMARK 500 12 HIS A 101 -35.16 -37.84 REMARK 500 12 ALA A 113 -71.05 -58.03 REMARK 500 12 PRO A 127 -177.87 -69.70 REMARK 500 12 SER A 129 135.66 -35.05 REMARK 500 13 SER A 5 112.57 -160.38 REMARK 500 13 PRO A 10 -178.99 -69.78 REMARK 500 13 ARG A 11 -51.43 -131.28 REMARK 500 13 ASN A 12 -38.00 -37.50 REMARK 500 13 SER A 15 148.99 -175.01 REMARK 500 13 ASP A 17 104.36 -54.03 REMARK 500 13 SER A 61 -38.89 -35.57 REMARK 500 13 ILE A 84 106.74 -46.49 REMARK 500 13 THR A 87 -32.24 -38.84 REMARK 500 13 HIS A 101 -34.00 -37.50 REMARK 500 13 ALA A 113 -72.01 -58.35 REMARK 500 13 SER A 123 41.24 33.89 REMARK 500 13 SER A 125 44.74 34.00 REMARK 500 14 PRO A 10 -175.08 -69.78 REMARK 500 14 ASN A 12 42.35 -83.39 REMARK 500 14 SER A 15 110.98 -161.88 REMARK 500 14 CYS A 59 166.89 -49.19 REMARK 500 14 SER A 61 -37.84 -35.33 REMARK 500 14 HIS A 101 -38.30 -39.96 REMARK 500 14 ALA A 113 -70.43 -54.03 REMARK 500 14 SER A 123 -74.69 -128.45 REMARK 500 14 SER A 125 92.78 -43.15 REMARK 500 15 SER A 5 161.14 -45.80 REMARK 500 15 SER A 6 137.32 -173.53 REMARK 500 15 VAL A 13 132.93 -39.09 REMARK 500 15 SER A 61 -33.18 -35.39 REMARK 500 15 HIS A 101 -35.28 -38.00 REMARK 500 15 ALA A 113 -70.51 -59.43 REMARK 500 15 SER A 125 42.77 34.24 REMARK 500 15 PRO A 127 -177.86 -69.76 REMARK 500 15 SER A 129 143.94 -37.02 REMARK 500 16 PRO A 10 -167.24 -69.74 REMARK 500 16 ARG A 11 -69.89 -124.92 REMARK 500 16 ASN A 12 -70.75 -98.40 REMARK 500 16 SER A 15 114.64 -173.77 REMARK 500 16 SER A 20 165.95 -42.92 REMARK 500 16 SER A 61 -36.58 -35.92 REMARK 500 16 HIS A 101 -39.24 -37.75 REMARK 500 16 ALA A 113 -70.69 -54.57 REMARK 500 17 SER A 15 110.37 -164.94 REMARK 500 17 SER A 61 -31.41 -35.46 REMARK 500 17 ALA A 113 -72.30 -58.22 REMARK 500 17 SER A 123 42.43 35.56 REMARK 500 18 GLU A 8 44.66 -102.07 REMARK 500 18 PRO A 10 -164.38 -69.73 REMARK 500 18 SER A 15 134.28 -35.57 REMARK 500 18 SER A 61 -33.64 -37.98 REMARK 500 18 ALA A 90 -34.29 -35.26 REMARK 500 18 HIS A 101 -38.39 -37.92 REMARK 500 18 ALA A 113 -72.58 -62.88 REMARK 500 18 SER A 125 78.80 -66.92 REMARK 500 19 SER A 2 -60.51 -134.03 REMARK 500 19 SER A 5 -51.00 -124.75 REMARK 500 19 VAL A 13 133.31 -35.18 REMARK 500 19 SER A 15 118.86 -175.07 REMARK 500 19 SER A 20 107.62 -48.93 REMARK 500 19 CYS A 59 170.88 -59.96 REMARK 500 19 SER A 65 -37.16 -38.77 REMARK 500 19 HIS A 101 -38.84 -37.59 REMARK 500 19 SER A 123 113.52 -36.34 REMARK 500 20 SER A 5 44.62 -83.38 REMARK 500 20 SER A 15 114.68 -175.59 REMARK 500 20 SER A 61 -34.41 -34.97 REMARK 500 20 SER A 123 120.95 -38.57 REMARK 500 20 LYS A 124 -64.30 -101.44 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 33 SG REMARK 620 2 ASP A 35 OD2 102.8 REMARK 620 3 CYS A 59 SG 117.3 110.0 REMARK 620 4 HIS A 101 NE2 101.9 113.0 111.5 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMK001001342.1 RELATED DB: TARGETDB
DBREF 1WFZ A 8 124 UNP Q9D7P6 NIFUN_MOUSE 45 161
SEQADV 1WFZ GLY A 1 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ SER A 2 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ SER A 3 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ GLY A 4 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ SER A 5 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ SER A 6 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ GLY A 7 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ SER A 125 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ GLY A 126 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ PRO A 127 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ SER A 128 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ SER A 129 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ GLY A 130 UNP Q9D7P6 CLONING ARTIFACT
SEQRES 1 A 130 GLY SER SER GLY SER SER GLY GLU ASN PRO ARG ASN VAL SEQRES 2 A 130 GLY SER LEU ASP LYS THR SER LYS ASN VAL GLY THR GLY SEQRES 3 A 130 LEU VAL GLY ALA PRO ALA CYS GLY ASP VAL MET LYS LEU SEQRES 4 A 130 GLN ILE GLN VAL ASP GLU LYS GLY LYS ILE VAL ASP ALA SEQRES 5 A 130 ARG PHE LYS THR PHE GLY CYS GLY SER ALA ILE ALA SER SEQRES 6 A 130 SER SER LEU ALA THR GLU TRP VAL LYS GLY LYS THR VAL SEQRES 7 A 130 GLU GLU ALA LEU THR ILE LYS ASN THR ASP ILE ALA LYS SEQRES 8 A 130 GLU LEU CYS LEU PRO PRO VAL LYS LEU HIS CYS SER MET SEQRES 9 A 130 LEU ALA GLU ASP ALA ILE LYS ALA ALA LEU ALA ASP TYR SEQRES 10 A 130 LYS LEU LYS GLN GLU SER LYS SER GLY PRO SER SER GLY
HET ZN A 201 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 GLY A 60 VAL A 73 1 14 HELIX 2 2 VAL A 78 ALA A 81 1 4 HELIX 3 3 ASN A 86 GLU A 92 1 7 HELIX 4 4 CYS A 102 GLN A 121 5 20
SHEET 1 A 3 VAL A 23 ALA A 30 0 SHEET 2 A 3 ASP A 35 VAL A 43 -1 O LEU A 39 N GLY A 26 SHEET 3 A 3 ILE A 49 PHE A 57 -1 O LYS A 55 N LYS A 38
LINK ZN ZN A 201 SG CYS A 33 1555 1555 2.33 LINK ZN ZN A 201 OD2 ASP A 35 1555 1555 2.07 LINK ZN ZN A 201 SG CYS A 59 1555 1555 2.28 LINK ZN ZN A 201 NE2 HIS A 101 1555 1555 2.09
SITE 1 AC1 5 CYS A 33 ASP A 35 CYS A 59 HIS A 101 SITE 2 AC1 5 CYS A 102
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000