10 20 30 40 50 60 70 80 1WFP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 26-MAY-04 1WFP
TITLE SOLUTION STRUCTURE OF THE ZF-AN1 DOMAIN FROM ARABIOPSIS TITLE 2 THALIANA F5O11.17 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER (AN1-LIKE) FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-AN1 DOMAIN; COMPND 5 SYNONYM: F5O11.17 PROTEIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: RIKEN CDNA RAFL04-16-M15; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030421-13; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS ZF-AN1 DOMAIN, ZINC BINDING, STRUCTURAL GENOMICS, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, METAL KEYWDS 3 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.TOMIZAWA,T.KIGAWA,N.NEMOTO,S.KOSHIBA,M.INOUE,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1WFP 1 VERSN REVDAT 1 26-NOV-04 1WFP 0
JRNL AUTH T.TOMIZAWA,T.KIGAWA,N.NEMOTO,S.KOSHIBA,M.INOUE, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE ZF-AN1 DOMAIN FROM JRNL TITL 2 ARABIOPSIS THALIANA F5O11.17 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WFP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-04. REMARK 100 THE RCSB ID CODE IS RCSB023528.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.25MM ZF-AN1 DOMAIN U-15N, REMARK 210 13C; 20MM D-TRIS-HCL(PH 7.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.1MM REMARK 210 ZNCL2; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 920 MHZ, 700 MHZ REMARK 210 SPECTROMETER MODEL : ECA, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : JEOL, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DELTA 4.2, XWINNMR 3.5, REMARK 210 NMRPIPE 20030801, NMRVIEW REMARK 210 5.0.4, KUJIRA 0.901, CYANA REMARK 210 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 13 124.85 -35.04 REMARK 500 1 LEU A 18 100.43 -55.15 REMARK 500 1 PRO A 21 0.80 -69.74 REMARK 500 1 LYS A 34 101.95 -59.37 REMARK 500 1 SER A 46 172.07 -50.92 REMARK 500 1 GLU A 59 93.79 -47.73 REMARK 500 1 LYS A 65 33.29 35.45 REMARK 500 2 LYS A 34 96.32 -54.32 REMARK 500 2 GLU A 59 96.36 -45.40 REMARK 500 2 PRO A 71 3.15 -69.80 REMARK 500 2 SER A 73 45.89 -95.31 REMARK 500 3 SER A 3 172.03 -50.17 REMARK 500 3 LYS A 34 105.84 -42.75 REMARK 500 3 GLU A 59 93.05 -47.26 REMARK 500 3 LYS A 65 39.41 -83.23 REMARK 500 4 ALA A 14 45.22 -88.87 REMARK 500 4 ALA A 16 142.51 -174.84 REMARK 500 4 PRO A 17 93.05 -69.75 REMARK 500 4 ASP A 19 151.73 -42.58 REMARK 500 4 PRO A 21 -165.72 -69.78 REMARK 500 4 LYS A 34 105.01 -56.31 REMARK 500 4 GLU A 59 94.77 -46.69 REMARK 500 4 PHE A 64 -179.21 -66.43 REMARK 500 4 LYS A 65 44.17 -81.13 REMARK 500 4 PRO A 71 3.38 -69.80 REMARK 500 4 SER A 72 42.89 73.42 REMARK 500 5 PRO A 17 -175.90 -69.77 REMARK 500 5 LEU A 18 85.54 -68.56 REMARK 500 5 PRO A 21 90.08 -69.76 REMARK 500 5 THR A 24 97.47 -58.93 REMARK 500 5 LYS A 34 102.83 -48.37 REMARK 500 5 THR A 38 33.38 -87.79 REMARK 500 5 ARG A 53 -34.79 -36.67 REMARK 500 5 GLU A 59 94.33 -47.55 REMARK 500 5 ALA A 68 138.17 -33.85 REMARK 500 5 SER A 73 159.97 -41.14 REMARK 500 6 ASP A 12 45.97 -104.75 REMARK 500 6 ALA A 15 30.33 -84.52 REMARK 500 6 ALA A 16 104.08 -45.28 REMARK 500 6 PRO A 17 -176.35 -69.77 REMARK 500 6 LEU A 18 78.91 -60.73 REMARK 500 6 PRO A 21 88.93 -69.73 REMARK 500 6 SER A 23 118.59 -33.17 REMARK 500 6 LYS A 34 98.01 -52.33 REMARK 500 6 THR A 38 30.85 -99.31 REMARK 500 6 PHE A 62 126.31 -39.15 REMARK 500 6 ALA A 68 48.98 36.13 REMARK 500 7 SER A 13 97.19 -53.15 REMARK 500 7 ALA A 25 -178.12 -170.41 REMARK 500 7 LYS A 34 101.54 -50.29 REMARK 500 7 LYS A 41 151.45 -49.39 REMARK 500 7 PHE A 64 -175.01 -59.88 REMARK 500 7 LYS A 65 48.89 -77.11 REMARK 500 7 SER A 73 83.81 -63.74 REMARK 500 8 THR A 8 48.65 -91.95 REMARK 500 8 PRO A 17 -163.73 -69.78 REMARK 500 8 LEU A 18 163.70 -42.56 REMARK 500 8 ASP A 19 97.57 -34.07 REMARK 500 8 ASN A 32 44.89 39.18 REMARK 500 8 LYS A 34 96.21 -52.13 REMARK 500 8 GLU A 59 94.03 -45.62 REMARK 500 8 LYS A 65 47.04 -81.23 REMARK 500 8 PRO A 71 1.72 -69.77 REMARK 500 9 ALA A 15 97.67 -63.83 REMARK 500 9 PRO A 17 -177.43 -69.81 REMARK 500 9 LEU A 18 107.45 -53.32 REMARK 500 9 PRO A 21 8.30 -69.78 REMARK 500 9 SER A 23 95.90 -53.86 REMARK 500 9 GLU A 59 97.01 -43.12 REMARK 500 9 PHE A 64 -61.16 -105.06 REMARK 500 10 SER A 23 138.03 -35.75 REMARK 500 10 LYS A 34 101.64 -51.85 REMARK 500 10 GLU A 59 92.67 -45.86 REMARK 500 10 PHE A 64 -178.05 -63.06 REMARK 500 10 VAL A 67 102.22 -38.96 REMARK 500 10 SER A 69 41.41 34.09 REMARK 500 11 PRO A 17 -172.70 -69.79 REMARK 500 11 THR A 24 44.67 -86.48 REMARK 500 11 LYS A 34 106.39 -55.65 REMARK 500 11 THR A 38 31.25 -84.16 REMARK 500 11 ARG A 53 -36.99 -39.57 REMARK 500 11 GLU A 59 90.86 -51.60 REMARK 500 12 PRO A 17 -172.82 -69.72 REMARK 500 12 LEU A 18 103.02 -39.51 REMARK 500 12 PRO A 21 12.59 -69.84 REMARK 500 12 ALA A 25 172.76 -56.43 REMARK 500 12 LYS A 34 98.95 -57.67 REMARK 500 12 GLU A 59 96.04 -45.22 REMARK 500 12 PHE A 64 30.77 -90.64 REMARK 500 12 PRO A 71 91.12 -69.74 REMARK 500 13 ALA A 15 39.85 -95.01 REMARK 500 13 PRO A 17 -172.38 -69.76 REMARK 500 13 SER A 23 124.53 -38.00 REMARK 500 13 LYS A 34 97.68 -55.60 REMARK 500 13 GLU A 59 96.45 -45.69 REMARK 500 13 ALA A 68 105.31 -55.97 REMARK 500 13 PRO A 71 87.23 -69.76 REMARK 500 13 SER A 73 104.45 -43.72 REMARK 500 14 THR A 8 93.87 -61.03 REMARK 500 14 ALA A 15 95.48 -68.49 REMARK 500 14 PRO A 17 -174.89 -69.72 REMARK 500 14 THR A 24 136.09 -34.03 REMARK 500 14 LYS A 34 105.55 -50.17 REMARK 500 14 PHE A 62 126.43 -35.80 REMARK 500 14 ASP A 63 97.56 -65.87 REMARK 500 14 VAL A 67 142.96 -38.29 REMARK 500 15 SER A 3 105.65 -169.53 REMARK 500 15 ALA A 14 -60.34 -123.53 REMARK 500 15 ALA A 16 144.53 -174.66 REMARK 500 15 LYS A 34 107.69 -50.08 REMARK 500 15 LYS A 41 154.93 -43.60 REMARK 500 15 CYS A 60 96.62 -68.80 REMARK 500 16 ARG A 9 -62.85 -100.18 REMARK 500 16 ALA A 15 68.64 -115.83 REMARK 500 16 ALA A 16 50.61 37.38 REMARK 500 16 PRO A 21 9.27 -69.71 REMARK 500 16 LYS A 22 166.22 -47.61 REMARK 500 16 SER A 23 117.39 -27.11 REMARK 500 16 THR A 24 150.62 -36.70 REMARK 500 16 LYS A 34 106.21 -54.34 REMARK 500 16 GLU A 59 96.44 -46.36 REMARK 500 17 SER A 3 94.37 -54.25 REMARK 500 17 SER A 5 97.18 -51.11 REMARK 500 17 THR A 8 109.99 -35.32 REMARK 500 17 ALA A 16 110.58 -34.04 REMARK 500 17 LYS A 34 103.33 -49.69 REMARK 500 17 GLU A 59 90.80 -45.96 REMARK 500 17 PHE A 64 -176.85 -67.51 REMARK 500 17 VAL A 67 -36.59 -38.18 REMARK 500 17 ALA A 68 113.75 -172.61 REMARK 500 17 SER A 72 84.73 -64.30 REMARK 500 18 SER A 2 147.64 -173.75 REMARK 500 18 ASP A 12 41.94 70.14 REMARK 500 18 LEU A 18 -31.47 -35.76 REMARK 500 18 PRO A 21 1.34 -69.76 REMARK 500 18 THR A 24 41.93 -107.53 REMARK 500 18 LYS A 34 104.23 -54.08 REMARK 500 18 THR A 38 30.21 -95.51 REMARK 500 18 GLU A 59 93.26 -47.74 REMARK 500 18 LYS A 65 79.09 -109.55 REMARK 500 19 THR A 8 40.91 -103.41 REMARK 500 19 ALA A 16 112.63 -175.57 REMARK 500 19 PRO A 17 78.91 -69.80 REMARK 500 19 ASP A 19 149.02 -175.96 REMARK 500 19 PRO A 21 79.21 -69.73 REMARK 500 19 SER A 23 -56.35 -126.61 REMARK 500 19 THR A 24 120.50 -35.52 REMARK 500 19 LYS A 34 99.63 -49.31 REMARK 500 20 ALA A 14 108.71 -169.37 REMARK 500 20 ALA A 15 78.71 -103.22 REMARK 500 20 ALA A 16 143.54 -174.86 REMARK 500 20 LEU A 18 142.69 -39.40 REMARK 500 20 PRO A 21 -165.59 -69.75 REMARK 500 20 LYS A 22 49.39 -84.98 REMARK 500 20 CYS A 28 169.64 -45.51 REMARK 500 20 LYS A 34 105.21 -50.73 REMARK 500 20 GLU A 59 92.87 -49.50 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 28 SG REMARK 620 2 CYS A 31 SG 96.5 REMARK 620 3 CYS A 49 SG 118.7 103.0 REMARK 620 4 HIS A 52 ND1 115.9 116.5 105.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 42 SG REMARK 620 2 CYS A 44 SG 105.1 REMARK 620 3 HIS A 58 NE2 92.5 115.8 REMARK 620 4 CYS A 60 SG 103.7 117.5 116.9 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ATR001008714.1 RELATED DB: TARGETDB
DBREF 1WFP A 8 68 UNP Q6NNI8 ZF2N1_ARATH 89 149
SEQADV 1WFP GLY A 1 UNP Q6NNI8 CLONING ARTIFACT SEQADV 1WFP SER A 2 UNP Q6NNI8 CLONING ARTIFACT SEQADV 1WFP SER A 3 UNP Q6NNI8 CLONING ARTIFACT SEQADV 1WFP GLY A 4 UNP Q6NNI8 CLONING ARTIFACT SEQADV 1WFP SER A 5 UNP Q6NNI8 CLONING ARTIFACT SEQADV 1WFP SER A 6 UNP Q6NNI8 CLONING ARTIFACT SEQADV 1WFP GLY A 7 UNP Q6NNI8 CLONING ARTIFACT SEQADV 1WFP SER A 69 UNP Q6NNI8 CLONING ARTIFACT SEQADV 1WFP GLY A 70 UNP Q6NNI8 CLONING ARTIFACT SEQADV 1WFP PRO A 71 UNP Q6NNI8 CLONING ARTIFACT SEQADV 1WFP SER A 72 UNP Q6NNI8 CLONING ARTIFACT SEQADV 1WFP SER A 73 UNP Q6NNI8 CLONING ARTIFACT SEQADV 1WFP GLY A 74 UNP Q6NNI8 CLONING ARTIFACT
SEQRES 1 A 74 GLY SER SER GLY SER SER GLY THR ARG GLY GLY ASP SER SEQRES 2 A 74 ALA ALA ALA PRO LEU ASP PRO PRO LYS SER THR ALA THR SEQRES 3 A 74 ARG CYS LEU SER CYS ASN LYS LYS VAL GLY VAL THR GLY SEQRES 4 A 74 PHE LYS CYS ARG CYS GLY SER THR PHE CYS GLY THR HIS SEQRES 5 A 74 ARG TYR PRO GLU SER HIS GLU CYS GLN PHE ASP PHE LYS SEQRES 6 A 74 GLY VAL ALA SER GLY PRO SER SER GLY
HET ZN A 201 1 HET ZN A 401 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
SHEET 1 A 2 PHE A 40 LYS A 41 0 SHEET 2 A 2 THR A 47 PHE A 48 -1 O PHE A 48 N PHE A 40
LINK ZN ZN A 201 SG CYS A 28 1555 1555 2.33 LINK ZN ZN A 201 SG CYS A 31 1555 1555 2.33 LINK ZN ZN A 201 SG CYS A 49 1555 1555 2.32 LINK ZN ZN A 201 ND1 HIS A 52 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 42 1555 1555 2.35 LINK ZN ZN A 401 SG CYS A 44 1555 1555 2.34 LINK ZN ZN A 401 NE2 HIS A 58 1555 1555 2.35 LINK ZN ZN A 401 SG CYS A 60 1555 1555 2.33
SITE 1 AC1 4 CYS A 28 CYS A 31 CYS A 49 HIS A 52 SITE 1 AC2 4 CYS A 42 CYS A 44 HIS A 58 CYS A 60
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000