10 20 30 40 50 60 70 80 1WEQ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER GENE REGULATION 25-MAY-04 1WEQ
TITLE SOLUTION STRUCTURE OF PHD DOMAIN IN PHD FINGER PROTEIN 7
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHD FINGER PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHD DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1700010P14; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030408-45; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS NMR, STRUCTURAL GENOMICS, PHD DOMAIN, PHD FINGER PROTEIN 7, KEYWDS 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, GENE KEYWDS 3 REGULATION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1WEQ 1 VERSN REVDAT 1 25-NOV-04 1WEQ 0
JRNL AUTH F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF PHD DOMAIN IN PHD FINGER JRNL TITL 2 PROTEIN 7 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUENTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WEQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-04. REMARK 100 THE RCSB ID CODE IS RCSB023498.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM U-15, 13C; 20MM D-TRIS- REMARK 210 HCL(PH 7.0); 100MM NACL; 0.1MM REMARK 210 ZNCL2; 1MM D-DTT; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.863, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 36 46.10 -76.99 REMARK 500 1 TRP A 44 39.30 -87.22 REMARK 500 1 CYS A 49 156.20 -44.42 REMARK 500 1 THR A 51 -73.52 -60.73 REMARK 500 1 HIS A 58 -177.40 -58.95 REMARK 500 1 CYS A 73 176.91 -58.71 REMARK 500 1 GLU A 75 -31.51 -38.61 REMARK 500 1 PRO A 78 86.58 -69.75 REMARK 500 1 SER A 80 108.91 -54.58 REMARK 500 2 CYS A 24 103.42 -51.00 REMARK 500 2 TYR A 31 109.81 -56.09 REMARK 500 2 ASP A 36 45.86 -77.29 REMARK 500 2 ASP A 40 -39.49 -37.19 REMARK 500 2 TRP A 44 37.75 -86.87 REMARK 500 2 HIS A 58 -179.12 -64.99 REMARK 500 2 LEU A 77 154.99 -42.77 REMARK 500 2 PRO A 78 4.91 -69.74 REMARK 500 2 ALA A 79 139.25 -34.12 REMARK 500 2 PRO A 82 96.74 -69.77 REMARK 500 3 ASP A 36 44.34 -78.13 REMARK 500 3 TRP A 44 33.18 -98.40 REMARK 500 3 HIS A 58 -175.84 -66.34 REMARK 500 3 SER A 63 41.04 39.03 REMARK 500 3 PRO A 66 2.65 -69.74 REMARK 500 3 SER A 68 128.77 -35.62 REMARK 500 3 LYS A 69 -66.66 -90.32 REMARK 500 3 LEU A 77 150.06 -49.57 REMARK 500 4 GLU A 10 141.16 -35.39 REMARK 500 4 TYR A 31 104.03 -56.01 REMARK 500 4 GLU A 32 -38.56 -34.47 REMARK 500 4 ASP A 36 45.34 -78.60 REMARK 500 4 TRP A 44 36.76 -88.64 REMARK 500 4 LEU A 46 107.11 -58.55 REMARK 500 4 CYS A 49 153.92 -42.74 REMARK 500 4 HIS A 58 -174.80 -64.29 REMARK 500 4 ARG A 59 -66.62 -90.25 REMARK 500 4 SER A 63 49.64 38.11 REMARK 500 4 ASN A 67 44.10 73.65 REMARK 500 4 SER A 68 -175.19 -59.26 REMARK 500 4 LEU A 77 152.51 -35.04 REMARK 500 4 PRO A 78 86.65 -69.74 REMARK 500 5 ALA A 13 37.34 39.77 REMARK 500 5 TYR A 31 109.88 -58.34 REMARK 500 5 ARG A 35 -174.77 -57.43 REMARK 500 5 ASP A 36 45.16 -78.63 REMARK 500 5 TRP A 44 41.12 -96.64 REMARK 500 5 CYS A 49 160.78 -44.88 REMARK 500 5 GLU A 75 -38.48 -36.20 REMARK 500 5 PRO A 78 99.93 -69.80 REMARK 500 5 PRO A 82 90.25 -69.78 REMARK 500 5 SER A 84 42.27 -82.34 REMARK 500 6 GLU A 8 173.76 -50.79 REMARK 500 6 ALA A 13 78.40 -110.67 REMARK 500 6 CYS A 24 109.65 -48.15 REMARK 500 6 ARG A 35 -174.61 -56.20 REMARK 500 6 ASP A 36 46.08 -77.55 REMARK 500 6 TRP A 44 44.96 -96.33 REMARK 500 6 CYS A 49 153.62 -44.01 REMARK 500 6 HIS A 58 176.87 -56.06 REMARK 500 6 SER A 62 30.75 -84.36 REMARK 500 6 SER A 63 43.16 36.84 REMARK 500 6 PRO A 66 3.52 -69.74 REMARK 500 6 SER A 68 129.68 -35.80 REMARK 500 6 PRO A 78 -179.84 -69.72 REMARK 500 6 SER A 84 42.62 35.09 REMARK 500 7 GLN A 19 159.58 -47.21 REMARK 500 7 ASP A 36 46.13 -75.97 REMARK 500 7 TRP A 44 39.13 -97.16 REMARK 500 7 CYS A 49 158.57 -48.06 REMARK 500 7 PRO A 66 0.72 -69.81 REMARK 500 7 SER A 68 144.99 -35.40 REMARK 500 7 LEU A 77 153.18 -43.34 REMARK 500 7 PRO A 78 91.61 -69.79 REMARK 500 8 ARG A 35 -174.08 -67.63 REMARK 500 8 ASP A 36 46.49 -76.76 REMARK 500 8 TRP A 44 44.94 -100.09 REMARK 500 8 CYS A 49 159.64 -47.83 REMARK 500 8 SER A 63 48.79 39.33 REMARK 500 8 PRO A 66 3.10 -69.72 REMARK 500 8 SER A 80 86.88 -66.39 REMARK 500 9 GLU A 8 148.65 -171.42 REMARK 500 9 LEU A 9 172.11 -50.66 REMARK 500 9 LEU A 17 128.77 -34.61 REMARK 500 9 ASP A 36 45.78 -77.92 REMARK 500 9 HIS A 58 -175.37 -63.38 REMARK 500 9 ARG A 59 -68.22 -90.18 REMARK 500 9 PRO A 78 84.98 -69.79 REMARK 500 10 SER A 3 -59.45 -129.28 REMARK 500 10 CYS A 24 107.91 -55.77 REMARK 500 10 ASP A 36 45.66 -78.05 REMARK 500 10 TRP A 44 45.05 -83.84 REMARK 500 10 CYS A 49 155.12 -45.63 REMARK 500 10 ASN A 67 33.74 73.83 REMARK 500 10 LYS A 69 -71.34 -65.60 REMARK 500 10 LEU A 77 151.21 -46.70 REMARK 500 10 PRO A 78 94.59 -69.78 REMARK 500 11 LEU A 9 172.88 -53.77 REMARK 500 11 ALA A 13 41.09 -92.15 REMARK 500 11 TYR A 18 -65.98 -91.63 REMARK 500 11 GLN A 19 -56.59 -132.02 REMARK 500 11 CYS A 24 108.47 -44.70 REMARK 500 11 TYR A 31 105.78 -56.22 REMARK 500 11 ASP A 36 46.10 -76.55 REMARK 500 11 TRP A 44 39.11 -86.12 REMARK 500 11 CYS A 49 159.54 -44.24 REMARK 500 11 SER A 62 30.05 -85.11 REMARK 500 11 SER A 63 38.64 35.60 REMARK 500 11 LYS A 69 -48.89 -131.06 REMARK 500 11 PRO A 78 6.63 -69.75 REMARK 500 11 SER A 84 105.21 -57.38 REMARK 500 12 CYS A 24 107.01 -59.70 REMARK 500 12 ASP A 36 46.10 -76.17 REMARK 500 12 CYS A 49 158.76 -46.24 REMARK 500 12 HIS A 58 -173.96 -60.09 REMARK 500 12 ARG A 59 -62.94 -90.86 REMARK 500 12 LEU A 77 152.24 -36.59 REMARK 500 12 PRO A 78 5.77 -69.72 REMARK 500 13 ALA A 13 41.15 -108.24 REMARK 500 13 ASP A 36 46.12 -76.53 REMARK 500 13 TRP A 44 44.94 -104.04 REMARK 500 13 CYS A 49 155.60 -45.26 REMARK 500 13 THR A 51 -71.93 -52.73 REMARK 500 13 LEU A 77 157.05 -37.92 REMARK 500 13 PRO A 78 6.40 -69.81 REMARK 500 14 TYR A 18 49.49 28.63 REMARK 500 14 ALA A 26 169.00 -47.41 REMARK 500 14 TYR A 31 109.26 -55.00 REMARK 500 14 ASP A 36 45.08 -78.54 REMARK 500 14 TRP A 44 45.89 -91.07 REMARK 500 14 LEU A 46 98.20 -64.08 REMARK 500 14 CYS A 49 152.86 -47.65 REMARK 500 14 HIS A 58 -178.47 -64.41 REMARK 500 14 SER A 62 31.24 -84.65 REMARK 500 14 SER A 63 47.00 34.55 REMARK 500 14 ASN A 67 44.92 70.08 REMARK 500 14 LYS A 69 -67.07 -94.70 REMARK 500 14 PRO A 78 85.95 -69.79 REMARK 500 14 ALA A 79 145.83 -170.31 REMARK 500 14 SER A 83 81.30 -67.69 REMARK 500 15 ALA A 13 42.87 -108.10 REMARK 500 15 ARG A 22 107.51 -160.80 REMARK 500 15 CYS A 24 97.97 -41.30 REMARK 500 15 ARG A 35 -173.77 -52.07 REMARK 500 15 ASP A 36 45.41 -76.85 REMARK 500 15 TRP A 44 45.06 -89.93 REMARK 500 15 CYS A 49 154.05 -38.66 REMARK 500 15 SER A 68 159.23 -39.92 REMARK 500 15 LYS A 69 -31.31 -130.00 REMARK 500 15 LEU A 77 153.01 -38.08 REMARK 500 16 TYR A 31 109.47 -59.10 REMARK 500 16 ASP A 36 46.92 -75.77 REMARK 500 16 TRP A 44 33.17 -95.63 REMARK 500 16 CYS A 49 161.16 -47.86 REMARK 500 16 LEU A 77 154.58 -36.25 REMARK 500 16 PRO A 78 6.48 -69.85 REMARK 500 17 SER A 15 168.01 -47.47 REMARK 500 17 CYS A 24 108.45 -47.04 REMARK 500 17 ARG A 35 -173.67 -53.02 REMARK 500 17 ASP A 36 41.67 -80.05 REMARK 500 17 TRP A 44 45.45 -85.55 REMARK 500 17 CYS A 49 159.92 -42.05 REMARK 500 17 SER A 62 30.70 -84.62 REMARK 500 17 SER A 63 48.61 34.97 REMARK 500 17 LEU A 77 155.56 -36.67 REMARK 500 17 PRO A 78 6.13 -69.73 REMARK 500 17 SER A 83 43.35 -89.45 REMARK 500 18 CYS A 24 107.03 -39.47 REMARK 500 18 TYR A 31 109.06 -53.20 REMARK 500 18 ASP A 36 44.84 -77.37 REMARK 500 18 TRP A 44 43.60 -86.32 REMARK 500 18 CYS A 49 159.38 -46.83 REMARK 500 18 SER A 62 30.31 -84.49 REMARK 500 18 SER A 63 46.54 34.71 REMARK 500 18 ASN A 67 44.23 -109.25 REMARK 500 18 PRO A 78 87.20 -69.77 REMARK 500 19 ALA A 13 39.01 34.30 REMARK 500 19 GLN A 19 170.26 -49.15 REMARK 500 19 CYS A 24 106.88 -48.19 REMARK 500 19 ARG A 35 -174.20 -55.16 REMARK 500 19 ASP A 36 46.37 -77.19 REMARK 500 19 TRP A 44 44.27 -95.10 REMARK 500 19 CYS A 49 153.49 -35.93 REMARK 500 19 SER A 62 30.20 -86.15 REMARK 500 19 SER A 63 41.68 37.02 REMARK 500 20 ASP A 36 47.33 -75.41 REMARK 500 20 TRP A 44 49.84 -89.65 REMARK 500 20 CYS A 49 158.40 -48.56 REMARK 500 20 HIS A 58 -179.33 -60.95 REMARK 500 20 SER A 68 -174.63 -66.27 REMARK 500 20 LEU A 77 157.34 -44.25 REMARK 500 20 PRO A 78 5.94 -69.73 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 24 SG REMARK 620 2 CYS A 29 SG 116.5 REMARK 620 3 CYS A 61 SG 100.6 91.9 REMARK 620 4 HIS A 58 ND1 113.9 116.1 114.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 52 SG REMARK 620 2 CYS A 73 SG 118.1 REMARK 620 3 CYS A 49 SG 106.3 116.8 REMARK 620 4 CYS A 76 SG 113.1 85.9 116.0 REMARK 620 N 1 2 3
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007007057.1 RELATED DB: TARGETDB
DBREF 1WEQ A 8 79 UNP Q9DAG9 PHF7_MOUSE 232 303
SEQADV 1WEQ GLY A 1 UNP Q9DAG9 CLONING ARTIFACT SEQADV 1WEQ SER A 2 UNP Q9DAG9 CLONING ARTIFACT SEQADV 1WEQ SER A 3 UNP Q9DAG9 CLONING ARTIFACT SEQADV 1WEQ GLY A 4 UNP Q9DAG9 CLONING ARTIFACT SEQADV 1WEQ SER A 5 UNP Q9DAG9 CLONING ARTIFACT SEQADV 1WEQ SER A 6 UNP Q9DAG9 CLONING ARTIFACT SEQADV 1WEQ GLY A 7 UNP Q9DAG9 CLONING ARTIFACT SEQADV 1WEQ SER A 80 UNP Q9DAG9 CLONING ARTIFACT SEQADV 1WEQ GLY A 81 UNP Q9DAG9 CLONING ARTIFACT SEQADV 1WEQ PRO A 82 UNP Q9DAG9 CLONING ARTIFACT SEQADV 1WEQ SER A 83 UNP Q9DAG9 CLONING ARTIFACT SEQADV 1WEQ SER A 84 UNP Q9DAG9 CLONING ARTIFACT SEQADV 1WEQ GLY A 85 UNP Q9DAG9 CLONING ARTIFACT
SEQRES 1 A 85 GLY SER SER GLY SER SER GLY GLU LEU GLU PRO GLY ALA SEQRES 2 A 85 PHE SER GLU LEU TYR GLN ARG TYR ARG HIS CYS ASP ALA SEQRES 3 A 85 PRO ILE CYS LEU TYR GLU GLN GLY ARG ASP SER PHE GLU SEQRES 4 A 85 ASP GLU GLY ARG TRP ARG LEU ILE LEU CYS ALA THR CYS SEQRES 5 A 85 GLY SER HIS GLY THR HIS ARG ASP CYS SER SER LEU ARG SEQRES 6 A 85 PRO ASN SER LYS LYS TRP GLU CYS ASN GLU CYS LEU PRO SEQRES 7 A 85 ALA SER GLY PRO SER SER GLY
HET ZN A 201 1 HET ZN A 401 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 ASP A 60 SER A 62 5 3 HELIX 2 2 ASN A 74 LEU A 77 1 4
SHEET 1 A 2 ILE A 47 LEU A 48 0 SHEET 2 A 2 GLY A 56 THR A 57 -1 O THR A 57 N ILE A 47
LINK ZN ZN A 201 SG CYS A 24 1555 1555 2.33 LINK ZN ZN A 201 SG CYS A 29 1555 1555 2.37 LINK ZN ZN A 201 SG CYS A 61 1555 1555 2.38 LINK ZN ZN A 201 ND1 HIS A 58 1555 1555 2.34 LINK ZN ZN A 401 SG CYS A 52 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 73 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 49 1555 1555 2.36 LINK ZN ZN A 401 SG CYS A 76 1555 1555 2.36
SITE 1 AC1 5 CYS A 24 CYS A 29 THR A 57 HIS A 58 SITE 2 AC1 5 CYS A 61 SITE 1 AC2 4 CYS A 49 CYS A 52 CYS A 73 CYS A 76
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000