10 20 30 40 50 60 70 80 1WEL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 25-MAY-04 1WEL
TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN NP_006038
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 12; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA BINDING DOMAIN; COMPND 5 SYNONYM: RNA BINDING MOTIF PROTEIN 12, SH3/WW DOMAIN COMPND 6 ANCHOR PROTEIN IN THE NUCLEUS, SWAN, HRIHFB2091; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIKEN CDNA HK04803S1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040126-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RNA BINDING PROTEIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.SOMEYA,Y.MUTO,T.NAGATA,S.SUZUKI,M.INOUE,T.KIGAWA,T.TERADA, AUTHOR 2 M.SHIROUZU,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1WEL 1 VERSN REVDAT 1 23-AUG-05 1WEL 0
JRNL AUTH T.SOMEYA,Y.MUTO,T.NAGATA,S.SUZUKI,M.INOUE,T.KIGAWA, JRNL AUTH 2 T.TERADA,M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN JRNL TITL 2 NP_006038 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUENTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WEL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-04. REMARK 100 THE RCSB ID CODE IS RCSB023493.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.08MM PROTEIN U-15N,13C; REMARK 210 20MM TRIS-HCL; 100MM NACL; 1MM REMARK 210 DTT; 0.02% NAN3; 90% H2O; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.8992, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 417 39.11 37.04 REMARK 500 1 ALA A 428 141.00 -174.40 REMARK 500 1 LEU A 437 152.38 -42.80 REMARK 500 1 ALA A 441 153.28 -44.01 REMARK 500 1 ASN A 443 -37.48 -37.04 REMARK 500 1 PHE A 450 44.74 -104.06 REMARK 500 1 VAL A 456 96.65 -68.56 REMARK 500 1 GLU A 457 -31.26 -38.12 REMARK 500 1 ILE A 460 103.66 -38.58 REMARK 500 1 ARG A 490 54.41 -106.17 REMARK 500 1 MET A 495 81.09 -67.75 REMARK 500 2 SER A 415 143.77 -170.38 REMARK 500 2 GLU A 427 48.33 -90.51 REMARK 500 2 ALA A 428 33.43 38.22 REMARK 500 2 LEU A 437 150.47 -36.54 REMARK 500 2 VAL A 456 105.41 -57.99 REMARK 500 2 ILE A 460 106.28 -37.73 REMARK 500 2 GLN A 522 37.30 -97.87 REMARK 500 2 SER A 523 164.38 -42.80 REMARK 500 3 LEU A 437 143.89 -37.29 REMARK 500 3 PHE A 450 48.14 -103.33 REMARK 500 3 GLU A 457 -32.03 -36.05 REMARK 500 3 ARG A 490 40.76 -96.05 REMARK 500 3 GLN A 522 140.27 -39.93 REMARK 500 3 SER A 526 99.21 -59.13 REMARK 500 4 SER A 413 142.23 -173.93 REMARK 500 4 PRO A 425 89.30 -69.81 REMARK 500 4 HIS A 426 139.06 -171.00 REMARK 500 4 LEU A 437 147.93 -38.29 REMARK 500 4 ASN A 443 -34.21 -38.65 REMARK 500 4 VAL A 456 93.30 -60.10 REMARK 500 4 GLU A 457 -30.29 -37.76 REMARK 500 4 ILE A 460 104.40 -34.43 REMARK 500 4 ASN A 467 35.01 -86.41 REMARK 500 4 ARG A 490 51.09 -102.21 REMARK 500 5 LYS A 412 151.71 -45.99 REMARK 500 5 SER A 415 -75.01 -46.45 REMARK 500 5 ARG A 419 38.78 38.90 REMARK 500 5 HIS A 426 161.07 -43.72 REMARK 500 5 LEU A 437 149.57 -35.17 REMARK 500 5 PHE A 450 47.45 -103.44 REMARK 500 5 GLU A 457 -30.21 -38.99 REMARK 500 5 ILE A 460 104.45 -35.68 REMARK 500 5 PRO A 525 -179.90 -69.80 REMARK 500 5 SER A 526 42.25 -97.95 REMARK 500 5 SER A 527 42.12 38.12 REMARK 500 6 LYS A 412 100.98 -43.15 REMARK 500 6 LEU A 437 151.02 -36.83 REMARK 500 6 PHE A 450 50.91 -114.99 REMARK 500 6 VAL A 456 92.54 -48.00 REMARK 500 6 ILE A 460 114.69 -37.12 REMARK 500 6 ARG A 490 42.84 -96.88 REMARK 500 6 ILE A 514 -18.29 -49.51 REMARK 500 7 SER A 409 83.73 -69.37 REMARK 500 7 ARG A 419 145.98 -174.47 REMARK 500 7 HIS A 426 97.48 -61.33 REMARK 500 7 LEU A 437 147.01 -39.45 REMARK 500 7 PHE A 450 45.81 -101.18 REMARK 500 7 GLU A 457 -30.36 -37.23 REMARK 500 7 ILE A 460 106.66 -35.58 REMARK 500 7 ARG A 479 -70.71 -43.92 REMARK 500 7 ARG A 490 51.77 -91.13 REMARK 500 7 SER A 526 -53.46 -130.57 REMARK 500 8 LYS A 412 -47.93 -130.53 REMARK 500 8 LEU A 437 150.01 -34.25 REMARK 500 8 GLU A 440 32.01 -95.59 REMARK 500 8 PHE A 450 50.44 -111.07 REMARK 500 8 ILE A 460 110.85 -38.30 REMARK 500 8 LYS A 492 53.22 72.43 REMARK 500 8 ILE A 514 -36.61 -36.87 REMARK 500 8 GLN A 522 124.83 -37.30 REMARK 500 9 ARG A 419 33.79 -94.78 REMARK 500 9 ASN A 443 -34.23 -39.58 REMARK 500 9 GLU A 457 -30.79 -37.05 REMARK 500 9 ARG A 490 55.49 -94.37 REMARK 500 9 SER A 527 -58.41 -129.52 REMARK 500 10 SER A 406 110.28 -167.63 REMARK 500 10 SER A 409 118.70 -166.05 REMARK 500 10 ALA A 428 118.30 -166.41 REMARK 500 10 LEU A 437 148.93 -39.25 REMARK 500 10 VAL A 456 98.97 -67.37 REMARK 500 10 GLU A 457 -34.08 -39.64 REMARK 500 10 ILE A 460 101.00 -34.63 REMARK 500 10 ARG A 490 39.54 -96.95 REMARK 500 10 GLN A 522 106.35 -50.07 REMARK 500 11 LEU A 437 150.83 -44.22 REMARK 500 11 PRO A 438 -177.18 -69.73 REMARK 500 11 PHE A 450 51.97 -107.48 REMARK 500 11 GLU A 457 -38.64 -34.33 REMARK 500 11 ILE A 460 103.40 -34.14 REMARK 500 11 ARG A 490 36.03 -96.53 REMARK 500 12 PRO A 414 -174.71 -69.81 REMARK 500 12 SER A 415 -50.77 -130.98 REMARK 500 12 SER A 424 133.71 -173.67 REMARK 500 12 LEU A 437 149.72 -34.22 REMARK 500 12 PHE A 450 51.16 -111.50 REMARK 500 12 VAL A 456 93.87 -59.78 REMARK 500 12 GLU A 457 -30.65 -37.21 REMARK 500 12 ARG A 490 46.74 -97.97 REMARK 500 12 SER A 523 36.33 39.33 REMARK 500 13 LEU A 437 154.82 -42.50 REMARK 500 13 ASN A 443 -36.13 -39.03 REMARK 500 13 PHE A 450 56.50 -116.67 REMARK 500 13 LYS A 452 31.37 70.01 REMARK 500 13 ILE A 460 106.03 -37.41 REMARK 500 13 ILE A 514 -30.75 -36.91 REMARK 500 13 GLN A 522 34.94 -88.42 REMARK 500 14 LEU A 437 147.55 -36.67 REMARK 500 14 ALA A 441 -177.88 -59.67 REMARK 500 14 PHE A 450 52.17 -113.24 REMARK 500 14 VAL A 456 97.05 -63.01 REMARK 500 14 GLU A 457 -36.36 -37.47 REMARK 500 14 ILE A 460 102.46 -34.83 REMARK 500 14 ARG A 490 57.30 -97.09 REMARK 500 14 SER A 527 97.60 -67.87 REMARK 500 15 HIS A 426 153.77 -48.41 REMARK 500 15 LEU A 437 152.58 -35.25 REMARK 500 15 PHE A 450 51.92 -113.94 REMARK 500 15 ARG A 479 -73.27 -51.30 REMARK 500 15 ASN A 480 -174.89 -62.36 REMARK 500 15 MET A 495 85.75 -68.46 REMARK 500 15 SER A 527 110.03 -36.79 REMARK 500 16 PRO A 414 0.23 -69.76 REMARK 500 16 SER A 415 113.48 -34.67 REMARK 500 16 ASN A 443 -38.19 -38.38 REMARK 500 16 PHE A 450 50.28 -102.47 REMARK 500 16 GLU A 457 -30.73 -36.49 REMARK 500 16 ILE A 460 116.32 -35.83 REMARK 500 16 ARG A 490 49.45 -98.75 REMARK 500 16 GLN A 522 154.98 -41.14 REMARK 500 17 SER A 424 54.92 74.36 REMARK 500 17 LEU A 437 151.15 -34.16 REMARK 500 17 GLU A 440 35.81 -99.41 REMARK 500 17 PHE A 450 47.89 -106.59 REMARK 500 17 VAL A 456 96.81 -62.10 REMARK 500 17 GLU A 457 -37.23 -34.12 REMARK 500 17 ILE A 460 122.07 -33.65 REMARK 500 17 ARG A 490 41.51 -84.51 REMARK 500 17 GLN A 522 166.39 -43.68 REMARK 500 18 GLN A 417 149.82 -174.73 REMARK 500 18 ARG A 423 41.25 -84.58 REMARK 500 18 SER A 424 144.07 -171.29 REMARK 500 18 HIS A 426 -61.47 -109.19 REMARK 500 18 LEU A 437 147.89 -39.90 REMARK 500 18 PHE A 450 50.57 -106.45 REMARK 500 18 GLU A 457 -29.45 -37.20 REMARK 500 18 ILE A 460 101.04 -35.97 REMARK 500 18 ARG A 479 -73.98 -43.28 REMARK 500 18 LYS A 492 49.35 29.48 REMARK 500 18 GLN A 522 152.51 -49.18 REMARK 500 18 SER A 527 -53.60 -122.24 REMARK 500 19 LYS A 412 37.45 -91.27 REMARK 500 19 GLN A 417 40.28 -83.77 REMARK 500 19 SER A 422 126.84 -171.09 REMARK 500 19 GLU A 427 124.40 -173.78 REMARK 500 19 LEU A 437 151.37 -39.38 REMARK 500 19 LYS A 451 174.02 -54.48 REMARK 500 19 GLU A 457 -32.63 -36.76 REMARK 500 19 ILE A 460 101.16 -34.23 REMARK 500 19 ARG A 479 -72.85 -64.22 REMARK 500 19 ILE A 514 -29.15 -38.06 REMARK 500 19 PRO A 525 98.05 -69.75 REMARK 500 20 PRO A 414 90.15 -69.77 REMARK 500 20 LEU A 437 151.52 -34.33 REMARK 500 20 LYS A 451 172.99 -59.42 REMARK 500 20 GLU A 457 -27.44 -38.19 REMARK 500 20 ILE A 460 106.35 -38.01 REMARK 500 20 ASN A 467 36.43 -93.78 REMARK 500 20 ILE A 514 -36.09 -35.78 REMARK 500 20 PRO A 525 2.68 -69.66 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100747.1 RELATED DB: TARGETDB
DBREF 1WEL A 412 522 UNP Q9NTZ6 RBM12_HUMAN 412 522
SEQADV 1WEL GLY A 405 UNP Q9NTZ6 CLONING ARTUFACT SEQADV 1WEL SER A 406 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 1WEL SER A 407 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 1WEL GLY A 408 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 1WEL SER A 409 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 1WEL SER A 410 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 1WEL GLY A 411 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 1WEL SER A 523 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 1WEL GLY A 524 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 1WEL PRO A 525 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 1WEL SER A 526 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 1WEL SER A 527 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 1WEL GLY A 528 UNP Q9NTZ6 CLONING ARTIFACT
SEQRES 1 A 124 GLY SER SER GLY SER SER GLY LYS SER PRO SER GLY GLN SEQRES 2 A 124 LYS ARG SER ARG SER ARG SER PRO HIS GLU ALA GLY PHE SEQRES 3 A 124 CYS VAL TYR LEU LYS GLY LEU PRO PHE GLU ALA GLU ASN SEQRES 4 A 124 LYS HIS VAL ILE ASP PHE PHE LYS LYS LEU ASP ILE VAL SEQRES 5 A 124 GLU ASP SER ILE TYR ILE ALA TYR GLY PRO ASN GLY LYS SEQRES 6 A 124 ALA THR GLY GLU GLY PHE VAL GLU PHE ARG ASN GLU ALA SEQRES 7 A 124 ASP TYR LYS ALA ALA LEU CYS ARG HIS LYS GLN TYR MET SEQRES 8 A 124 GLY ASN ARG PHE ILE GLN VAL HIS PRO ILE THR LYS LYS SEQRES 9 A 124 GLY MET LEU GLU LYS ILE ASP MET ILE ARG LYS ARG LEU SEQRES 10 A 124 GLN SER GLY PRO SER SER GLY
HELIX 1 1 GLU A 442 PHE A 450 1 9 HELIX 2 2 GLU A 481 CYS A 489 1 9 HELIX 3 3 THR A 506 GLN A 522 1 17
SHEET 1 A 4 TYR A 461 TYR A 464 0 SHEET 2 A 4 ALA A 470 GLU A 477 -1 O PHE A 475 N TYR A 461 SHEET 3 A 4 CYS A 431 LYS A 435 -1 N VAL A 432 O VAL A 476 SHEET 4 A 4 GLN A 501 ILE A 505 -1 O HIS A 503 N TYR A 433 SHEET 1 B 2 GLN A 493 MET A 495 0 SHEET 2 B 2 ARG A 498 ILE A 500 -1
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000