10 20 30 40 50 60 70 80 1W71 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DISEASE RESISTANCE 24-AUG-04 1W71
TITLE THEORETICAL MODEL OF THE THREE-DIMENSIONAL STRUCTURE OF A TITLE 2 DISEASE RESISTANCE GENE HOMOLOG ENCODING RESISTANCE TITLE 3 PROTEIN FROM VIGNA MUNGO
COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIGNA MUNGO YELLOW MOSAIC VIRUS RESISTANCE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NB-ARC DOMAIN, RESIDUES 1-132
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIGNA MUNGO; SOURCE 3 ORGANISM_COMMON: BLACKGRAM
KEYWDS VIGNA MUNGO,DISEASE RESISTANCE PROTEIN,HOMOLOGY MODELING, KEYWDS 2 HOMODIMER,INTERFACE AREA
EXPDTA THEORETICAL MODEL
AUTHOR J.BASAK,R.P.BAHADUR,A.PAL,C.MUKHOPADHYAY
REVDAT 2 12-OCT-06 1W71 1 JRNL REVDAT 1 22-FEB-06 1W71 0
JRNL AUTH J.BASAK,R.P.BAHADUR JRNL TITL THEORETICAL MODEL OF THE THREE-DIMENSIONAL JRNL TITL 2 STRUCTURE OF A DISEASE RESISTANCE GENE HOMOLOG JRNL TITL 3 ENCODING RESISTANCE PROTEIN IN VIGNA MUNGO JRNL REF J.BIOMOL.STRUCT.DYN. V. 24 123 2006 JRNL REFN ASTM JBSDD6 US ISSN 0739-1102
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MINIMIZATION WAS PERFORMED BY THE REMARK 3 STEEPEST DESCENT FOLLOWED BY THE CONJUGATE GRADIENT METHOD
REMARK 4 REMARK 4 1W71 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 27-AUG-2004. REMARK 100 THE EBI ID CODE IS EBI-20875.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS MODEL WAS BUILD USING THE STRUCTURE OF AN ATP- REMARK 220 BINDING CASSETTTE TRANSPORTER PROTEIN FROM VIBRIO REMARK 220 CHOLERAE (PDB CODE 1PF4)
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 NE2 HIS A 107 NE2 HIS B 107 0.33 REMARK 500 CD1 ILE A 109 CD1 ILE B 109 0.80 REMARK 500 CD2 HIS A 107 CE1 HIS B 107 1.10 REMARK 500 CE1 HIS A 107 CD2 HIS B 107 1.10 REMARK 500 CG LYS A 76 CD LYS B 76 1.16 REMARK 500 CD LYS A 76 CG LYS B 76 1.16 REMARK 500 CE1 HIS A 107 NE2 HIS B 107 1.21 REMARK 500 NE2 HIS A 107 CE1 HIS B 107 1.21 REMARK 500 CG LYS A 76 CE LYS B 76 1.25 REMARK 500 CE LYS A 76 CG LYS B 76 1.25 REMARK 500 CG1 ILE A 109 CD1 ILE B 109 1.39 REMARK 500 CD1 ILE A 109 CG1 ILE B 109 1.39 REMARK 500 CE1 HIS A 107 CE1 HIS B 107 1.45 REMARK 500 CG LYS A 76 NZ LYS B 76 1.46 REMARK 500 NZ LYS A 76 CG LYS B 76 1.46 REMARK 500 CG HIS A 107 CE1 HIS B 107 1.49 REMARK 500 CE1 HIS A 107 CG HIS B 107 1.49 REMARK 500 ND1 HIS A 107 ND1 HIS B 107 1.61 REMARK 500 CD2 HIS A 107 NE2 HIS B 107 1.68 REMARK 500 NE2 HIS A 107 CD2 HIS B 107 1.68 REMARK 500 CG ARG A 75 OE1 GLN B 77 1.70 REMARK 500 OE1 GLN A 77 CG ARG B 75 1.70 REMARK 500 ND1 HIS A 107 CE1 HIS B 107 1.78 REMARK 500 CE1 HIS A 107 ND1 HIS B 107 1.78 REMARK 500 CG LYS A 76 CG LYS B 76 1.89 REMARK 500 CB LYS A 76 NZ LYS B 76 1.92 REMARK 500 CD LYS A 76 CD LYS B 76 1.92 REMARK 500 NZ LYS A 76 CB LYS B 76 1.92 REMARK 500 CG HIS A 107 ND1 HIS B 107 1.97 REMARK 500 ND1 HIS A 107 CG HIS B 107 1.97 REMARK 500 CB LYS A 76 CD LYS B 76 2.16 REMARK 500 CD LYS A 76 CB LYS B 76 2.16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 92 C SER A 92 O -0.180 REMARK 500 SER B 92 C SER B 92 O -0.180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 46 -88.85 147.22 REMARK 500 LEU A 124 -78.38 57.48 REMARK 500 LEU B 46 -88.85 147.22 REMARK 500 LEU B 124 -78.38 57.48
DBREF 1W71 A 1 129 UNP Q7XZT9 Q7XZT9_9FABA 1 129 DBREF 1W71 A 130 132 PDB 1W71 1W71 130 132 DBREF 1W71 B 1 129 UNP Q7XZT9 Q7XZT9_9FABA 1 129 DBREF 1W71 B 130 132 PDB 1W71 1W71 130 132
SEQADV 1W71 VAL A 1 UNP Q7XZT9 PHE 1 CONFLICT SEQADV 1W71 TYR A 2 UNP Q7XZT9 ILE 2 CONFLICT SEQADV 1W71 ASN A 3 UNP Q7XZT9 ILE 3 CONFLICT SEQADV 1W71 SER A 11 UNP Q7XZT9 GLY 11 CONFLICT SEQADV 1W71 SER A 32 UNP Q7XZT9 THR 32 CONFLICT SEQADV 1W71 LEU A 33 UNP Q7XZT9 VAL 33 CONFLICT SEQADV 1W71 ASN A 42 UNP Q7XZT9 LYS 42 CONFLICT SEQADV 1W71 VAL A 96 UNP Q7XZT9 ILE 96 CONFLICT SEQADV 1W71 ASP A 120 UNP Q7XZT9 GLU 120 CONFLICT SEQADV 1W71 VAL B 1 UNP Q7XZT9 PHE 1 CONFLICT SEQADV 1W71 TYR B 2 UNP Q7XZT9 ILE 2 CONFLICT SEQADV 1W71 ASN B 3 UNP Q7XZT9 ILE 3 CONFLICT SEQADV 1W71 SER B 11 UNP Q7XZT9 GLY 11 CONFLICT SEQADV 1W71 SER B 32 UNP Q7XZT9 THR 32 CONFLICT SEQADV 1W71 LEU B 33 UNP Q7XZT9 VAL 33 CONFLICT SEQADV 1W71 ASN B 42 UNP Q7XZT9 LYS 42 CONFLICT SEQADV 1W71 VAL B 96 UNP Q7XZT9 ILE 96 CONFLICT SEQADV 1W71 ASP B 120 UNP Q7XZT9 GLU 120 CONFLICT
SEQRES 1 A 132 VAL TYR ASN SER ILE ALA ASP ASP PHE ASP SER SER CYS SEQRES 2 A 132 PHE LEU GLN ASN VAL ARG GLU GLU SER ASN LYS HIS GLY SEQRES 3 A 132 LEU LYS HIS LEU GLN SER LEU LEU LEU SER GLU ILE LEU SEQRES 4 A 132 GLY GLU ASN ASP ILE ILE LEU ALA SER VAL GLN ARG GLY SEQRES 5 A 132 ILE SER VAL ILE GLN GLN ARG LEU GLY ARG LYS LYS VAL SEQRES 6 A 132 LEU LEU ILE LEU ASP ASP VAL ASP ASN ARG LYS GLN LEU SEQRES 7 A 132 GLN ALA PHE ALA GLY ARG SER ASP TRP PHE GLY PRO GLY SEQRES 8 A 132 SER ARG VAL ILE VAL THR THR ARG ASP GLU GLN LEU LEU SEQRES 9 A 132 LYS SER HIS GLU ILE GLU ARG THR TYR GLU VAL GLU GLU SEQRES 10 A 132 LEU ASN ASP ASN ASP SER LEU GLN LEU LEU ILE TRP ASN SEQRES 11 A 132 ALA PHE SEQRES 1 B 132 VAL TYR ASN SER ILE ALA ASP ASP PHE ASP SER SER CYS SEQRES 2 B 132 PHE LEU GLN ASN VAL ARG GLU GLU SER ASN LYS HIS GLY SEQRES 3 B 132 LEU LYS HIS LEU GLN SER LEU LEU LEU SER GLU ILE LEU SEQRES 4 B 132 GLY GLU ASN ASP ILE ILE LEU ALA SER VAL GLN ARG GLY SEQRES 5 B 132 ILE SER VAL ILE GLN GLN ARG LEU GLY ARG LYS LYS VAL SEQRES 6 B 132 LEU LEU ILE LEU ASP ASP VAL ASP ASN ARG LYS GLN LEU SEQRES 7 B 132 GLN ALA PHE ALA GLY ARG SER ASP TRP PHE GLY PRO GLY SEQRES 8 B 132 SER ARG VAL ILE VAL THR THR ARG ASP GLU GLN LEU LEU SEQRES 9 B 132 LYS SER HIS GLU ILE GLU ARG THR TYR GLU VAL GLU GLU SEQRES 10 B 132 LEU ASN ASP ASN ASP SER LEU GLN LEU LEU ILE TRP ASN SEQRES 11 B 132 ALA PHE
HELIX 1 1 VAL A 1 SER A 11 1 11 HELIX 2 2 SER A 22 HIS A 29 1 8 HELIX 3 3 LEU A 30 LEU A 34 5 5 HELIX 4 4 SER A 36 LEU A 46 1 11 HELIX 5 5 ILE A 53 LYS A 63 1 11 HELIX 6 6 ALA A 82 ILE A 95 1 14 HELIX 7 7 HIS A 107 THR A 112 5 6 HELIX 8 8 VAL B 1 SER B 11 1 11 HELIX 9 9 SER B 22 HIS B 29 1 8 HELIX 10 10 LEU B 30 LEU B 34 5 5 HELIX 11 11 SER B 36 LEU B 46 1 11 HELIX 12 12 ILE B 53 LYS B 63 1 11 HELIX 13 13 ALA B 82 ILE B 95 1 14 HELIX 14 14 HIS B 107 THR B 112 5 6
SHEET 1 AA 2 LEU A 118 ASN A 121 0 SHEET 2 AA 2 LEU A 126 TRP A 129 -1 O LEU A 127 N ASP A 120 SHEET 1 BA 2 LEU B 118 ASN B 121 0 SHEET 2 BA 2 LEU B 126 TRP B 129 -1 O LEU B 127 N ASP B 120
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000