10 20 30 40 50 60 70 80 1W5D - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 06-AUG-04 1W5D
TITLE CRYSTAL STRUCTURE OF PBP4A FROM BACILLUS SUBTILIS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.16.4
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423
KEYWDS PENICILLIN-BINDING PROTEIN, D-ALA-D-ALA-CARBOXYPEPTIDASE, KEYWDS 2 PEPTIDOGLYCAN, BACILLUS SUBTILIS, BETA-LACTAM, HYDROLASE, KEYWDS 3 PEPTIDOGLYCAN SYNTHESIS
EXPDTA X-RAY DIFFRACTION
AUTHOR E.SAUVAGE,R.HERMAN,S.PETRELLA,C.DUEZ,J.M.FRERE,P.CHARLIER
REVDAT 3 24-FEB-09 1W5D 1 VERSN REVDAT 2 03-JUL-07 1W5D 1 JRNL REVDAT 1 07-DEC-05 1W5D 0
JRNL AUTH E.SAUVAGE,C.DUEZ,R.HERMAN,F.KERFF,S.PETRELLA, JRNL AUTH 2 J.W.ANDERSON,S.A.ADEDIRAN,R.F.PRATT,J.M.FRERE, JRNL AUTH 3 P.CHARLIER JRNL TITL CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS JRNL TITL 2 PENICILLIN-BINDING PROTEIN 4A, AND ITS COMPLEX JRNL TITL 3 WITH A PEPTIDOGLYCAN MIMETIC PEPTIDE. JRNL REF J.MOL.BIOL. V. 371 528 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17582436 JRNL DOI 10.1016/J.JMB.2007.05.071
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.DUEZ,M.VANHOVE,X.GALLET,F.BOUILLENNE, REMARK 1 AUTH 2 J.D.DOCQUIER,A.BRANS,J.M.FRERE REMARK 1 TITL PURIFICATION AND CHARACTERIZATION OF PBP4A, A NEW REMARK 1 TITL 2 LOW-MOLECULAR-WEIGHT PENICILLIN-BINDING PROTEIN REMARK 1 TITL 3 FROM BACILLUS SUBTILIS REMARK 1 REF J.BACTERIOL. V. 183 1595 2001 REMARK 1 REFN ISSN 0021-9193 REMARK 1 PMID 11160090 REMARK 1 DOI 10.1128/JB.183.5.1595-1599.2001
REMARK 2 REMARK 2 RESOLUTION. 2.1 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLF REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2233933.32 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 34283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1705 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4727 REMARK 3 BIN R VALUE (WORKING SET) : 0.273 REMARK 3 BIN FREE R VALUE : 0.310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 253 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3462 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 359 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.01 REMARK 3 B22 (A**2) : 5.01 REMARK 3 B33 (A**2) : -10.01 REMARK 3 B12 (A**2) : 3.66 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.28 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.3 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.5 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.80 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.31 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.07 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.25 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.17 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.351299 REMARK 3 BSOL : 54.7461 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1W5D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-04. REMARK 100 THE PDBE ID CODE IS EBI-20679.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976267 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4-SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34499 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 58.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.7 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS 0.1M, KCL 0.8M, PH 7.8, REMARK 280 PEG3350, CACL2 0.2M
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 152.30933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.15467 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 76.15467 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 152.30933 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 CA CA A1463 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4
REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 40 145.49 -177.21 REMARK 500 ALA A 51 -146.07 51.96 REMARK 500 THR A 81 125.19 -174.08 REMARK 500 LEU A 82 118.76 172.40 REMARK 500 LYS A 85 -28.09 -168.35 REMARK 500 ASN A 177 -173.13 -65.91 REMARK 500 LYS A 179 -159.08 70.11 REMARK 500 GLU A 182 -97.57 -89.82 REMARK 500 GLU A 183 144.11 164.58 REMARK 500 PRO A 190 -84.75 -48.93 REMARK 500 LYS A 191 108.04 163.08 REMARK 500 SER A 299 60.37 69.28 REMARK 500 ASP A 370 35.13 -95.98 REMARK 500 SER A 414 116.38 -163.97 REMARK 500 LYS A 428 -25.44 65.40 REMARK 500 LYS A 431 -178.79 -46.78 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1463 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 146 OE2 REMARK 620 2 HIS A 218 NE2 91.7 REMARK 620 3 GLU A 146 OE1 45.4 106.1 REMARK 620 4 GLU A 146 OE2 172.3 85.4 142.3 REMARK 620 5 HIS A 218 NE2 84.7 133.5 103.8 92.1 REMARK 620 6 GLU A 146 OE1 141.9 104.7 96.6 45.8 106.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1464 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 166 OD1 REMARK 620 2 ASP A 164 OD1 83.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1465 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 283 ND1 REMARK 620 2 HIS A 115 NE2 116.9 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1463 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1464 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1465
DBREF 1W5D A 1 462 UNP P39844 PBP_BACSU 30 491
SEQRES 1 A 462 ALA GLU LYS GLN ASP ALA LEU SER GLY GLN ILE ASP LYS SEQRES 2 A 462 ILE LEU ALA ASP HIS PRO ALA LEU GLU GLY ALA MET ALA SEQRES 3 A 462 GLY ILE THR VAL ARG SER ALA GLU THR GLY ALA VAL LEU SEQRES 4 A 462 TYR GLU HIS SER GLY ASP THR ARG MET ARG PRO ALA SER SEQRES 5 A 462 SER LEU LYS LEU LEU THR ALA ALA ALA ALA LEU SER VAL SEQRES 6 A 462 LEU GLY GLU ASN TYR SER PHE THR THR GLU VAL ARG THR SEQRES 7 A 462 ASP GLY THR LEU LYS GLY LYS LYS LEU ASN GLY ASN LEU SEQRES 8 A 462 TYR LEU LYS GLY LYS GLY ASP PRO THR LEU LEU PRO SER SEQRES 9 A 462 ASP PHE ASP LYS MET ALA GLU ILE LEU LYS HIS SER GLY SEQRES 10 A 462 VAL LYS VAL ILE LYS GLY ASN LEU ILE GLY ASP ASP THR SEQRES 11 A 462 TRP HIS ASP ASP MET ARG LEU SER PRO ASP MET PRO TRP SEQRES 12 A 462 SER ASP GLU TYR THR TYR TYR GLY ALA PRO ILE SER ALA SEQRES 13 A 462 LEU THR ALA SER PRO ASN GLU ASP TYR ASP ALA GLY THR SEQRES 14 A 462 VAL ILE VAL GLU VAL THR PRO ASN GLN LYS GLU GLY GLU SEQRES 15 A 462 GLU PRO ALA VAL SER VAL SER PRO LYS THR ASP TYR ILE SEQRES 16 A 462 THR ILE LYS ASN ASP ALA LYS THR THR ALA ALA GLY SER SEQRES 17 A 462 GLU LYS ASP LEU THR ILE GLU ARG GLU HIS GLY THR ASN SEQRES 18 A 462 THR ILE THR ILE GLU GLY SER VAL PRO VAL ASP ALA ASN SEQRES 19 A 462 LYS THR LYS GLU TRP ILE SER VAL TRP GLU PRO ALA GLY SEQRES 20 A 462 TYR ALA LEU ASP LEU PHE LYS GLN SER LEU LYS LYS GLN SEQRES 21 A 462 GLY ILE THR VAL LYS GLY ASP ILE LYS THR GLY GLU ALA SEQRES 22 A 462 PRO SER SER SER ASP VAL LEU LEU SER HIS ARG SER MET SEQRES 23 A 462 PRO LEU SER LYS LEU PHE VAL PRO PHE MET LYS LEU SER SEQRES 24 A 462 ASN ASN GLY HIS ALA GLU VAL LEU VAL LYS GLU MET GLY SEQRES 25 A 462 LYS VAL LYS LYS GLY GLU GLY SER TRP GLU LYS GLY LEU SEQRES 26 A 462 GLU VAL LEU ASN SER THR LEU PRO GLU PHE GLY VAL ASP SEQRES 27 A 462 SER LYS SER LEU VAL LEU ARG ASP GLY SER GLY ILE SER SEQRES 28 A 462 HIS ILE ASP ALA VAL SER SER ASP GLN LEU SER GLN LEU SEQRES 29 A 462 LEU TYR ASP ILE GLN ASP GLN SER TRP PHE SER ALA TYR SEQRES 30 A 462 LEU ASN SER LEU PRO VAL ALA GLY ASN PRO ASP ARG MET SEQRES 31 A 462 VAL GLY GLY THR LEU ARG ASN ARG MET LYS GLY THR PRO SEQRES 32 A 462 ALA GLN GLY LYS VAL ARG ALA LYS THR GLY SER LEU SER SEQRES 33 A 462 THR VAL SER SER LEU SER GLY TYR ALA GLU THR LYS SER SEQRES 34 A 462 GLY LYS LYS LEU VAL PHE SER ILE LEU LEU ASN GLY LEU SEQRES 35 A 462 ILE ASP GLU GLU ASP GLY LYS ASP ILE GLU ASP GLN ILE SEQRES 36 A 462 ALA VAL ILE LEU ALA ASN GLN
HET CA A1463 1 HET CA A1464 1 HET CA A1465 1
HETNAM CA CALCIUM ION
FORMUL 2 CA 3(CA 2+) FORMUL 5 HOH *359(H2 O1)
HELIX 1 1 ASP A 5 HIS A 18 1 14 HELIX 2 2 PRO A 19 GLU A 22 5 4 HELIX 3 3 PRO A 50 SER A 53 5 4 HELIX 4 4 LEU A 54 GLY A 67 1 14 HELIX 5 5 LEU A 102 SER A 116 1 15 HELIX 6 6 PRO A 142 GLU A 146 5 5 HELIX 7 7 TYR A 149 ALA A 152 5 4 HELIX 8 8 GLU A 244 GLN A 260 1 17 HELIX 9 9 PRO A 287 SER A 299 1 13 HELIX 10 10 ASN A 300 LYS A 316 1 17 HELIX 11 11 SER A 320 LEU A 332 1 13 HELIX 12 12 PRO A 333 GLY A 336 5 4 HELIX 13 13 ASP A 338 LEU A 342 5 5 HELIX 14 14 SER A 357 GLN A 369 1 13 HELIX 15 15 TRP A 373 LEU A 381 1 9 HELIX 16 16 ASP A 388 GLY A 393 1 6 HELIX 17 17 THR A 394 ARG A 396 5 3 HELIX 18 18 ASP A 444 GLU A 446 5 3 HELIX 19 19 ASP A 447 ASN A 461 1 15
SHEET 1 AA 5 VAL A 38 HIS A 42 0 SHEET 2 AA 5 MET A 25 SER A 32 -1 O ILE A 28 N HIS A 42 SHEET 3 AA 5 LYS A 432 ASN A 440 -1 O VAL A 434 N ARG A 31 SHEET 4 AA 5 VAL A 418 GLU A 426 -1 O SER A 419 N LEU A 439 SHEET 5 AA 5 VAL A 408 LEU A 415 -1 O ARG A 409 N TYR A 424 SHEET 1 AB 5 ILE A 268 THR A 270 0 SHEET 2 AB 5 LEU A 125 ASP A 128 1 O LEU A 125 N LYS A 269 SHEET 3 AB 5 LEU A 91 GLY A 95 1 O LEU A 91 N ILE A 126 SHEET 4 AB 5 THR A 73 THR A 78 -1 O GLU A 75 N LYS A 94 SHEET 5 AB 5 ASP A 278 ARG A 284 -1 O ASP A 278 N THR A 78 SHEET 1 AC 3 LYS A 86 LEU A 87 0 SHEET 2 AC 3 VAL A 120 ILE A 121 1 O VAL A 120 N LEU A 87 SHEET 3 AC 3 THR A 263 VAL A 264 1 O THR A 263 N ILE A 121 SHEET 1 AD 3 ALA A 185 SER A 189 0 SHEET 2 AD 3 THR A 169 THR A 175 -1 O ILE A 171 N SER A 189 SHEET 3 AD 3 THR A 236 SER A 241 -1 O THR A 236 N VAL A 174 SHEET 1 AE 3 THR A 196 THR A 204 0 SHEET 2 AE 3 THR A 222 PRO A 230 1 O ILE A 223 N LYS A 198 SHEET 3 AE 3 THR A 213 ARG A 216 -1 O THR A 213 N GLU A 226
LINK CA CA A1463 OE2 GLU A 146 1555 5655 3.07 LINK CA CA A1463 NE2 HIS A 218 1555 5655 2.07 LINK CA CA A1463 OE1 GLU A 146 1555 5655 2.15 LINK CA CA A1463 OE2 GLU A 146 1555 1555 3.05 LINK CA CA A1463 NE2 HIS A 218 1555 1555 2.08 LINK CA CA A1463 OE1 GLU A 146 1555 1555 2.13 LINK CA CA A1464 OD1 ASP A 164 1555 1555 3.22 LINK CA CA A1464 OD1 ASP A 166 1555 1555 3.26 LINK CA CA A1465 NE2 HIS A 115 1555 6556 2.13 LINK CA CA A1465 ND1 HIS A 283 1555 1555 2.13
CISPEP 1 SER A 189 PRO A 190 0 0.49
SITE 1 AC1 2 GLU A 146 HIS A 218 SITE 1 AC2 2 ASP A 164 ASP A 166 SITE 1 AC3 2 HIS A 115 HIS A 283
CRYST1 67.411 67.411 228.464 90.00 90.00 120.00 P 32 1 2 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014834 0.008565 0.000000 0.00000
SCALE2 0.000000 0.017129 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004377 0.00000