1VTE - Header Asymmetric Unit

HEADER DNA 21-MAY-90 1VTE

TITLE MOLECULAR STRUCTURE OF NICKED DNA. MODEL A4

COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*AP*CP*GP*CP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*CP*GP*CP*GP*TP*T)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*TP*TP*CP*GP*CP*G)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 SYNTHETIC: YES

KEYWDS B-DNA, DOUBLE HELIX, NICKED, DNA

EXPDTA X-RAY DIFFRACTION

AUTHOR J.AYMANI,M.COLL,G.A.VAN DER MAREL,J.H.VAN BOOM,A.H.-J.WANG,A.RICH

REVDAT 1 13-JUL-11 1VTE 0

JRNL AUTH J.AYMANI,M.COLL,G.A.VAN DER MAREL,J.H.VAN BOOM,A.H.-J.WANG, JRNL AUTH 2 A.RICH JRNL TITL MOLECULAR STRUCTURE OF NICKED DNA: A SUBSTRATE FOR DNA JRNL TITL 2 REPAIR ENZYMES JRNL REF PROC.NATL.ACAD.SCI.USA V. 87 2526 1990 JRNL REFN ISSN 0027-8424

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.COLL,J.AYMAMI,G.A.VAN DER MAREL,J.H.VAN BOOM,A.RICH, REMARK 1 AUTH 2 A.H.-J.WANG REMARK 1 TITL MOLECULAR STRUCTURE OF THE NETROPSIN-D(CGCGATATCGCG) REMARK 1 TITL 2 COMPLEX. DNA CONFORMATION IN AN ALTERNATING AT SEGMENT REMARK 1 REF BIOCHEMISTRY V. 28 310 1989 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.COLL,C.A.FREDERICK,A.H.-J.WANG,A.RICH REMARK 1 TITL A BIFURCATED HYDROGEN-BONDED CONFORMATION IN THE REMARK 1 TITL 2 D(*A(DOT)*T) BASE PAIRS OF THE DNA DODECAMER D(CGCAAATTTGCG) REMARK 1 TITL 3 AND ITS COMPLEX WITH DISTAMYCIN REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 84 8385 1987 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 3 REMARK 1 AUTH R.WING,H.DREW,T.TAKANO,C.BROKA,S.TANAKA,K.ITAKURA, REMARK 1 AUTH 2 R.E.DICKERSON REMARK 1 TITL CRYSTAL STRUCTURE ANALYSIS OF A COMPLETE TURN OF B-DNA REMARK 1 REF NATURE V. 287 755 1980 REMARK 1 REFN ISSN 0028-0836

REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NUCLSQ REMARK 3 AUTHORS : WESTHOF,DUMAS,MORAS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 483 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BOND DISTANCE (A) : NULL ; NULL REMARK 3 SUGAR-BASE BOND ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BONDS DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BONDS (A**2) : NULL ; NULL REMARK 3 SUGAR-BASE ANGLES (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BONDS (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1VTE COMPLIES WITH FORMAT V. 3.20, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-11. REMARK 100 THE RCSB ID CODE IS RCSB003038.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 298.00 REMARK 200 PH : 5.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : RIGAKU AFC-5R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 553 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: ULTIMA REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.00, VAPOR DIFFUSION, TEMPERATURE REMARK 280 277.00K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 12.99500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.31000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.01500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.31000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 12.99500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.01500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 57 O HOH A 95 0.26 REMARK 500 O3' DC A 11 O HOH A 92 0.88 REMARK 500 OP1 DC A 11 O HOH A 94 1.51 REMARK 500 P DG A 12 O HOH A 92 1.55 REMARK 500 OP1 DG A 12 O HOH A 92 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 29 O HOH C 93 2664 0.73 REMARK 500 O HOH B 60 O HOH C 25 2564 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 2 P DG A 2 O5' -0.062 REMARK 500 DA A 6 C2 DA A 6 N3 0.066 REMARK 500 DA A 7 O3' DA A 8 P -0.080 REMARK 500 DG A 12 P DG A 12 O5' 0.062 REMARK 500 DG B 14 P DG B 14 O5' 0.104 REMARK 500 DC B 13 O3' DG B 14 P -0.075 REMARK 500 DC B 15 C2' DC B 15 C1' 0.062 REMARK 500 DT B 17 P DT B 17 O5' -0.066 REMARK 500 DT B 17 O3' DT B 18 P 0.075 REMARK 500 DC C 21 P DC C 21 O5' 0.078 REMARK 500 DG C 22 P DG C 22 OP1 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O4' - C4' - C3' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC A 1 N3 - C4 - C5 ANGL. DEV. = -2.5 DEGREES REMARK 500 DC A 1 N3 - C4 - N4 ANGL. DEV. = 5.5 DEGREES REMARK 500 DG A 2 OP1 - P - OP2 ANGL. DEV. = -11.0 DEGREES REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DC A 3 OP1 - P - OP2 ANGL. DEV. = -9.2 DEGREES REMARK 500 DC A 3 P - O5' - C5' ANGL. DEV. = -9.8 DEGREES REMARK 500 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG A 4 OP1 - P - OP2 ANGL. DEV. = -12.1 DEGREES REMARK 500 DG A 4 O5' - P - OP1 ANGL. DEV. = 7.4 DEGREES REMARK 500 DG A 4 O5' - C5' - C4' ANGL. DEV. = -6.9 DEGREES REMARK 500 DG A 4 O4' - C1' - N9 ANGL. DEV. = 9.7 DEGREES REMARK 500 DG A 4 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA A 5 OP1 - P - OP2 ANGL. DEV. = -11.9 DEGREES REMARK 500 DA A 5 C5' - C4' - O4' ANGL. DEV. = 7.6 DEGREES REMARK 500 DA A 5 C6 - N1 - C2 ANGL. DEV. = 5.4 DEGREES REMARK 500 DA A 5 N1 - C2 - N3 ANGL. DEV. = -4.7 DEGREES REMARK 500 DA A 5 C5 - C6 - N1 ANGL. DEV. = -3.2 DEGREES REMARK 500 DA A 5 N1 - C6 - N6 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA A 6 OP1 - P - OP2 ANGL. DEV. = -9.5 DEGREES REMARK 500 DA A 6 P - O5' - C5' ANGL. DEV. = 16.3 DEGREES REMARK 500 DA A 6 O4' - C1' - N9 ANGL. DEV. = 7.1 DEGREES REMARK 500 DA A 6 C6 - N1 - C2 ANGL. DEV. = 4.8 DEGREES REMARK 500 DA A 6 N1 - C2 - N3 ANGL. DEV. = -5.4 DEGREES REMARK 500 DA A 7 N1 - C2 - N3 ANGL. DEV. = -4.0 DEGREES REMARK 500 DA A 6 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 DA A 8 OP1 - P - OP2 ANGL. DEV. = -13.2 DEGREES REMARK 500 DA A 8 O4' - C1' - N9 ANGL. DEV. = 9.6 DEGREES REMARK 500 DA A 8 C6 - N1 - C2 ANGL. DEV. = 4.2 DEGREES REMARK 500 DA A 8 N1 - C2 - N3 ANGL. DEV. = -3.5 DEGREES REMARK 500 DA A 8 C5 - C6 - N1 ANGL. DEV. = -3.1 DEGREES REMARK 500 DA A 7 C3' - O3' - P ANGL. DEV. = 18.2 DEGREES REMARK 500 DC A 9 OP1 - P - OP2 ANGL. DEV. = -15.5 DEGREES REMARK 500 DC A 9 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC A 9 N3 - C4 - C5 ANGL. DEV. = -2.5 DEGREES REMARK 500 DC A 9 N3 - C4 - N4 ANGL. DEV. = 4.8 DEGREES REMARK 500 DG A 10 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC A 9 C3' - O3' - P ANGL. DEV. = 13.7 DEGREES REMARK 500 DC A 11 OP1 - P - OP2 ANGL. DEV. = -17.8 DEGREES REMARK 500 DC A 11 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC A 11 O3' - P - OP1 ANGL. DEV. = 7.7 DEGREES REMARK 500 DG A 12 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG A 12 C5 - C6 - O6 ANGL. DEV. = -4.0 DEGREES REMARK 500 DC A 11 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DC B 13 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 DC B 13 N3 - C4 - N4 ANGL. DEV. = 6.2 DEGREES REMARK 500 DC B 13 C5 - C4 - N4 ANGL. DEV. = -4.7 DEGREES REMARK 500 DG B 14 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC B 13 C3' - O3' - P ANGL. DEV. = 19.4 DEGREES REMARK 500 DC B 15 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 94 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL

REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 26 DISTANCE = 11.65 ANGSTROMS REMARK 525 HOH A 28 DISTANCE = 7.93 ANGSTROMS REMARK 525 HOH A 32 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A 36 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A 40 DISTANCE = 5.30 ANGSTROMS REMARK 525 HOH A 46 DISTANCE = 11.55 ANGSTROMS REMARK 525 HOH A 49 DISTANCE = 11.56 ANGSTROMS REMARK 525 HOH A 51 DISTANCE = 15.09 ANGSTROMS REMARK 525 HOH A 57 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH A 74 DISTANCE = 7.92 ANGSTROMS REMARK 525 HOH A 79 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH A 80 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 83 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 87 DISTANCE = 5.55 ANGSTROMS REMARK 525 HOH A 88 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 95 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH B 27 DISTANCE = 13.88 ANGSTROMS REMARK 525 HOH B 38 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 44 DISTANCE = 10.87 ANGSTROMS REMARK 525 HOH B 50 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 55 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH B 58 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH B 61 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH B 62 DISTANCE = 8.23 ANGSTROMS REMARK 525 HOH B 64 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B 65 DISTANCE = 8.04 ANGSTROMS REMARK 525 HOH B 76 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B 77 DISTANCE = 8.26 ANGSTROMS REMARK 525 HOH B 81 DISTANCE = 10.63 ANGSTROMS

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NDN RELATED DB: PDB REMARK 900 1NDN CONTAINS MODELS A4 AND T4.

DBREF 1VTE A 1 12 PDB 1VTE 1VTE 1 12 DBREF 1VTE B 13 18 PDB 1VTE 1VTE 13 18 DBREF 1VTE C 19 24 PDB 1VTE 1VTE 19 24

SEQRES 1 A 12 DC DG DC DG DA DA DA DA DC DG DC DG SEQRES 1 B 6 DC DG DC DG DT DT SEQRES 1 C 6 DT DT DC DG DC DG

FORMUL 4 HOH *72(H2 O)

CRYST1 25.990 44.030 66.620 90.00 90.00 90.00 P 21 21 21 4

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.038476 0.000000 0.000000 0.00000

SCALE2 0.000000 0.022712 0.000000 0.00000

SCALE3 0.000000 0.000000 0.015011 0.00000