10 20 30 40 50 60 70 80 1VRF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HEME PROTEIN 25-MAR-99 1VRF
TITLE SOLUTION STRUCTURE OF COMPONENT IV GLYCERA DIBRANCHIATA TITLE 2 MONOMERIC HEMOGLOBIN-CO
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (GLOBIN, MONOMERIC COMPONENT M-IV); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GHM4; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCERA DIBRANCHIATA; SOURCE 3 ORGANISM_TAXID: 6350; SOURCE 4 TISSUE: BLOOD; SOURCE 5 CELL: ERYTHROCYTE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET9D; SOURCE 10 OTHER_DETAILS: RECOMBINANT PROTEIN WAS PRODUCED IN E. COLI
KEYWDS HEME PROTEIN, GLOBIN, OXYGEN TRANSPORT
EXPDTA SOLUTION NMR
AUTHOR B.F.VOLKMAN,S.L.ALAM,J.D.SATTERLEE,J.L.MARKLEY
REVDAT 3 24-FEB-09 1VRF 1 VERSN REVDAT 2 30-APR-99 1VRF 3 ATOM REVDAT 1 01-APR-99 1VRF 0
JRNL AUTH B.F.VOLKMAN,S.L.ALAM,J.D.SATTERLEE,J.L.MARKLEY JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF JRNL TITL 2 COMPONENT IV GLYCERA DIBRANCHIATA MONOMERIC JRNL TITL 3 HEMOGLOBIN-CO. JRNL REF BIOCHEMISTRY V. 37 10906 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9692983 JRNL DOI 10.1021/BI980810B
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.L.ALAM,B.F.VOLKMAN,J.L.MARKLEY,J.D.SATTERLEE REMARK 1 TITL DETAILED NMR ANALYSIS OF THE HEME-PROTEIN REMARK 1 TITL 2 INTERACTIONS IN COMPONENT IV GLYCERA DIBRANCHIATA REMARK 1 TITL 3 MONOMERIC HEMOGLOBIN-CO REMARK 1 REF J.BIOMOL.NMR V. 11 19 1998 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1008202621725
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINED ITERATIVELY WITH X-PLOR AND REMARK 3 PERL SCRIPTS WRITTEN IN-HOUSE AS DESCRIBED IN JRNL CITATION REMARK 3 ABOVE
REMARK 4 REMARK 4 1VRF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-99. REMARK 100 THE RCSB ID CODE IS RCSB000720.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 100 MM KCL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOEY & QUANTITATIVE J- REMARK 210 CORRELATION REMARK 210 SPECTROMETER FIELD STRENGTH : 499.84 MHZ, 500.13 MHZ, REMARK 210 600.13 MHZ, 750.13 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.843 REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY/ REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: 3D 15N NOESY-HSQC; 3D 13C NOESY-HSQC; 4D 13C/15N NOESY- REMARK 210 HSQC; 3D HNHB; 3D HNCOHB; 2D JCC; 2D JNC; 3D HNHA; 2D LRCC
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 -50.29 -120.67 REMARK 500 SER A 36 -70.97 -64.07 REMARK 500 SER A 71 31.04 -89.91 REMARK 500 HIS A 72 -43.27 -159.53 REMARK 500 LEU A 73 -88.76 42.87 REMARK 500 ASP A 75 89.82 -64.67 REMARK 500 HIS A 97 -93.89 -128.39 REMARK 500 ILE A 98 134.20 61.48 REMARK 500 ILE A 118 53.38 -91.97 REMARK 500 MET A 122 94.09 -64.09 REMARK 500 GLN A 146 81.33 57.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 7 0.19 SIDE_CHAIN REMARK 500 ARG A 89 0.22 SIDE_CHAIN REMARK 500 ARG A 117 0.32 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 148 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 90 NE2 REMARK 620 2 CMO A 149 C 179.9 REMARK 620 3 CMO A 149 O 179.9 0.0 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: LIG REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: HIS A 90 NE2-HEME FE COORDINATE-COVALENT BOND REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 148 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMO A 149
DBREF 1VRF A 1 147 UNP P15447 GLB4_GLYDI 1 147
SEQRES 1 A 147 GLY LEU SER ALA ALA GLN ARG GLN VAL VAL ALA SER THR SEQRES 2 A 147 TRP LYS ASP ILE ALA GLY SER ASP ASN GLY ALA GLY VAL SEQRES 3 A 147 GLY LYS GLU CYS PHE THR LYS PHE LEU SER ALA HIS HIS SEQRES 4 A 147 ASP MET ALA ALA VAL PHE GLY PHE SER GLY ALA SER ASP SEQRES 5 A 147 PRO GLY VAL ALA ASP LEU GLY ALA LYS VAL LEU ALA GLN SEQRES 6 A 147 ILE GLY VAL ALA VAL SER HIS LEU GLY ASP GLU GLY LYS SEQRES 7 A 147 MET VAL ALA GLU MET LYS ALA VAL GLY VAL ARG HIS LYS SEQRES 8 A 147 GLY TYR GLY ASN LYS HIS ILE LYS ALA GLU TYR PHE GLU SEQRES 9 A 147 PRO LEU GLY ALA SER LEU LEU SER ALA MET GLU HIS ARG SEQRES 10 A 147 ILE GLY GLY LYS MET ASN ALA ALA ALA LYS ASP ALA TRP SEQRES 11 A 147 ALA ALA ALA TYR ALA ASP ILE SER GLY ALA LEU ILE SER SEQRES 12 A 147 GLY LEU GLN SER
HET HEM A 148 73 HET CMO A 149 2
HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CMO CARBON MONOXIDE
HETSYN HEM HEME
FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 CMO C O
HELIX 1 1 ALA A 4 ILE A 17 1 14 HELIX 2 2 ALA A 24 GLY A 27 1 4 HELIX 3 3 CYS A 30 ALA A 37 1 8 HELIX 4 4 HIS A 39 PHE A 45 1 7 HELIX 5 5 GLY A 54 VAL A 70 1 17 HELIX 6 6 MET A 79 GLY A 92 1 14 HELIX 7 7 ALA A 100 ARG A 117 1 18 HELIX 8 8 ALA A 124 ILE A 142 1 19
LINK NE2 HIS A 90 FE HEM A 148 1555 1555 2.20 LINK FE HEM A 148 C CMO A 149 1555 1555 1.90 LINK FE HEM A 148 O CMO A 149 1555 1555 3.03
SITE 1 LIG 1 HIS A 90 SITE 1 AC1 12 PHE A 34 MET A 41 VAL A 44 PHE A 45 SITE 2 AC1 12 LEU A 58 VAL A 62 HIS A 90 TYR A 93 SITE 3 AC1 12 TYR A 102 PHE A 103 LEU A 141 CMO A 149 SITE 1 AC2 4 PHE A 31 PHE A 45 VAL A 62 HEM A 148
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000