10 20 30 40 50 60 70 80 1VKX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION/DNA 17-SEP-97 1VKX
TITLE CRYSTAL STRUCTURE OF THE NFKB P50/P65 HETERODIMER COMPLEXED TITLE 2 TO THE IMMUNOGLOBULIN KB DNA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*C)- COMPND 3 3'); COMPND 4 CHAIN: C; COMPND 5 SYNONYM: IMMUNOGLOBULIN KAPPA B DNA; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: ACTIVE NF-KAPPA-B IS A HETERODIMER OF AN COMPND 8 ABOUT 50 KD DNA-BINDING SUBUNIT AND THE WEAK DNA-BINDING COMPND 9 SUBUNIT P65; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DNA (5'-D(*AP*GP*GP*AP*AP*AP*GP*TP*CP*CP*CP*C)- COMPND 12 3'); COMPND 13 CHAIN: D; COMPND 14 SYNONYM: IMMUNOGLOBULIN KAPPA B DNA; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: ACTIVE NF-KAPPA-B IS A HETERODIMER OF AN COMPND 17 ABOUT 50 KD DNA-BINDING SUBUNIT AND THE WEAK DNA-BINDING COMPND 18 SUBUNIT P65; COMPND 19 MOL_ID: 3; COMPND 20 MOLECULE: PROTEIN (NF-KAPPA B P65 SUBUNIT); COMPND 21 CHAIN: A; COMPND 22 MOL_ID: 4; COMPND 23 MOLECULE: PROTEIN (NF-KAPPA B P50 SUBUNIT); COMPND 24 CHAIN: B
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 MOL_ID: 4; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090
KEYWDS TRANSCRIPTION FACTOR, NF-KB, HETERODIMER, DNA-BINDING, KEYWDS 2 TRANSCRIPTION/DNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR F.CHEN,D.B.HUANG,G.GHOSH
REVDAT 2 24-FEB-09 1VKX 1 VERSN REVDAT 1 09-DEC-98 1VKX 0
JRNL AUTH F.E.CHEN,D.B.HUANG,Y.Q.CHEN,G.GHOSH JRNL TITL CRYSTAL STRUCTURE OF P50/P65 HETERODIMER OF JRNL TITL 2 TRANSCRIPTION FACTOR NF-KAPPAB BOUND TO DNA. JRNL REF NATURE V. 391 410 1998 JRNL REFN ISSN 0028-0836 JRNL PMID 9450761 JRNL DOI 10.1038/34956
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.GHOSH,G.V.DUYNE,S.GHOSH,P.B.SIGLER REMARK 1 TITL STRUCTURE OF NF-KB P50 HOMODIMER BOUND TO A KB SITE REMARK 1 REF NATURE V. 373 303 1995 REMARK 1 REFN ISSN 0028-0836
REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 19562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 978 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4630 REMARK 3 NUCLEIC ACID ATOMS : 486 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.97 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.86 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1VKX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : APR-97 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26430 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMEN REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: ONE MONOMER OF P50/DNA COMPLEX AND ONE MONO OF REMARK 200 P65/DNA COMPLEX REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.50, VAPOR DIFFUSION, HANGING REMARK 280 DROP
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.28000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.30500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.30500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 154.92000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.30500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.30500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.64000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.30500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.30500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 154.92000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.30500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.30500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.64000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 103.28000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 1 C1' - O4' - C4' ANGL. DEV. = -7.3 DEGREES REMARK 500 DT C 1 C3' - C2' - C1' ANGL. DEV. = -8.6 DEGREES REMARK 500 DT C 1 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DA C 6 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 PRO A 82 C - N - CA ANGL. DEV. = -13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 25 108.94 -167.53 REMARK 500 LYS A 28 94.69 -57.01 REMARK 500 GLN A 29 -98.02 -37.09 REMARK 500 ARG A 41 133.41 58.37 REMARK 500 SER A 42 -116.92 71.52 REMARK 500 GLU A 49 -65.56 -29.55 REMARK 500 THR A 52 148.81 -174.98 REMARK 500 VAL A 72 76.11 -115.36 REMARK 500 PRO A 81 -78.46 11.47 REMARK 500 ASP A 107 33.96 -94.42 REMARK 500 ARG A 133 28.58 -78.58 REMARK 500 ILE A 134 -10.18 -165.41 REMARK 500 ASN A 137 76.24 67.22 REMARK 500 ASN A 139 99.94 -178.57 REMARK 500 ASP A 153 77.64 -118.49 REMARK 500 LEU A 154 17.31 -62.98 REMARK 500 VAL A 165 -165.31 -108.95 REMARK 500 PRO A 168 -39.88 -33.03 REMARK 500 ALA A 188 107.49 -57.78 REMARK 500 PRO A 189 -6.20 -52.65 REMARK 500 CYS A 197 -92.66 -129.92 REMARK 500 VAL A 199 102.67 -166.98 REMARK 500 ASN A 200 -60.42 -17.72 REMARK 500 ASN A 202 -4.68 -160.98 REMARK 500 LEU A 215 63.75 -109.92 REMARK 500 LYS A 218 100.80 -42.88 REMARK 500 GLU A 225 120.31 176.37 REMARK 500 TYR A 227 68.64 -101.65 REMARK 500 PRO A 231 97.17 44.15 REMARK 500 GLU A 234 128.56 158.59 REMARK 500 GLN A 247 -12.00 63.55 REMARK 500 SER A 261 32.77 -152.06 REMARK 500 LEU A 262 174.27 -46.33 REMARK 500 GLN A 263 -36.60 -141.49 REMARK 500 PRO A 265 85.77 -64.08 REMARK 500 VAL A 268 -156.40 -47.73 REMARK 500 ARG A 278 1.37 81.34 REMARK 500 GLN A 287 59.58 -94.22 REMARK 500 TYR A 288 105.60 -43.73 REMARK 500 TYR B 341 136.11 -178.61 REMARK 500 GLN B 350 -51.44 76.84 REMARK 500 GLU B 373 58.36 5.87 REMARK 500 LYS B 374 -128.66 39.02 REMARK 500 ASN B 375 71.13 -62.99 REMARK 500 LYS B 376 118.73 176.58 REMARK 500 TYR B 379 145.97 176.82 REMARK 500 TYR B 387 -173.56 -26.38 REMARK 500 VAL B 388 43.53 -148.43 REMARK 500 THR B 399 -158.49 -74.62 REMARK 500 ASN B 400 -7.32 -143.32 REMARK 500 LYS B 414 -93.73 -47.25 REMARK 500 HIS B 415 3.97 -60.82 REMARK 500 ALA B 425 79.13 -114.25 REMARK 500 PRO B 427 -119.16 -131.87 REMARK 500 GLU B 457 45.81 -82.42 REMARK 500 ALA B 458 -32.56 -159.47 REMARK 500 VAL B 469 -114.96 -88.43 REMARK 500 SER B 471 0.61 -66.53 REMARK 500 ALA B 474 118.93 -30.85 REMARK 500 TYR B 475 -153.89 154.13 REMARK 500 LEU B 476 178.71 66.24 REMARK 500 GLN B 477 -66.37 -158.81 REMARK 500 ALA B 478 -41.08 179.66 REMARK 500 GLU B 479 -61.59 -6.10 REMARK 500 ASP B 483 -0.18 64.21 REMARK 500 LYS B 491 -32.47 -39.21 REMARK 500 ALA B 498 22.81 -72.37 REMARK 500 VAL B 499 -58.36 -138.76 REMARK 500 THR B 522 90.59 66.11 REMARK 500 SER B 524 129.49 -15.74 REMARK 500 GLU B 530 122.18 -10.64 REMARK 500 ASP B 554 -77.70 -57.76 REMARK 500 THR B 561 0.95 -55.54 REMARK 500 CYS B 570 -140.12 -94.06 REMARK 500 LYS B 572 72.98 19.02 REMARK 500 LYS B 575 -47.39 0.48 REMARK 500 ASP B 577 44.46 -85.80 REMARK 500 GLU B 587 -139.34 77.38 REMARK 500 PHE B 598 -160.52 165.78 REMARK 500 GLN B 606 -12.06 56.46 REMARK 500 VAL B 627 -163.38 -111.34 REMARK 500 THR B 639 -131.05 -106.20 REMARK 500 TYR B 647 77.62 -59.61 REMARK 500 PRO B 649 -178.80 -54.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT C 1 0.10 SIDE_CHAIN REMARK 500 DG C 3 0.06 SIDE_CHAIN REMARK 500 DT C 9 0.07 SIDE_CHAIN REMARK 500 TYR A 227 0.07 SIDE_CHAIN REMARK 500 TYR B 387 0.07 SIDE_CHAIN REMARK 500 TYR B 648 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1VKX A 19 291 UNP Q04207 TF65_MOUSE 19 291 DBREF 1VKX B 339 650 UNP P25799 NFKB1_MOUSE 39 350 DBREF 1VKX C 1 12 PDB 1VKX 1VKX 1 12 DBREF 1VKX D 13 24 PDB 1VKX 1VKX 13 24
SEQADV 1VKX ALA A 19 UNP Q04207 PRO 19 CONFLICT
SEQRES 1 C 12 DT DG DG DG DG DA DC DT DT DT DC DC SEQRES 1 D 12 DA DG DG DA DA DA DG DT DC DC DC DC SEQRES 1 A 273 ALA TYR VAL GLU ILE ILE GLU GLN PRO LYS GLN ARG GLY SEQRES 2 A 273 MET ARG PHE ARG TYR LYS CYS GLU GLY ARG SER ALA GLY SEQRES 3 A 273 SER ILE PRO GLY GLU ARG SER THR ASP THR THR LYS THR SEQRES 4 A 273 HIS PRO THR ILE LYS ILE ASN GLY TYR THR GLY PRO GLY SEQRES 5 A 273 THR VAL ARG ILE SER LEU VAL THR LYS ASP PRO PRO HIS SEQRES 6 A 273 ARG PRO HIS PRO HIS GLU LEU VAL GLY LYS ASP CYS ARG SEQRES 7 A 273 ASP GLY TYR TYR GLU ALA ASP LEU CYS PRO ASP ARG SER SEQRES 8 A 273 ILE HIS SER PHE GLN ASN LEU GLY ILE GLN CYS VAL LYS SEQRES 9 A 273 LYS ARG ASP LEU GLU GLN ALA ILE SER GLN ARG ILE GLN SEQRES 10 A 273 THR ASN ASN ASN PRO PHE HIS VAL PRO ILE GLU GLU GLN SEQRES 11 A 273 ARG GLY ASP TYR ASP LEU ASN ALA VAL ARG LEU CYS PHE SEQRES 12 A 273 GLN VAL THR VAL ARG ASP PRO ALA GLY ARG PRO LEU LEU SEQRES 13 A 273 LEU THR PRO VAL LEU SER HIS PRO ILE PHE ASP ASN ARG SEQRES 14 A 273 ALA PRO ASN THR ALA GLU LEU LYS ILE CYS ARG VAL ASN SEQRES 15 A 273 ARG ASN SER GLY SER CYS LEU GLY GLY ASP GLU ILE PHE SEQRES 16 A 273 LEU LEU CYS ASP LYS VAL GLN LYS GLU ASP ILE GLU VAL SEQRES 17 A 273 TYR PHE THR GLY PRO GLY TRP GLU ALA ARG GLY SER PHE SEQRES 18 A 273 SER GLN ALA ASP VAL HIS ARG GLN VAL ALA ILE VAL PHE SEQRES 19 A 273 ARG THR PRO PRO TYR ALA ASP PRO SER LEU GLN ALA PRO SEQRES 20 A 273 VAL ARG VAL SER MET GLN LEU ARG ARG PRO SER ASP ARG SEQRES 21 A 273 GLU LEU SER GLU PRO MET GLU PHE GLN TYR LEU PRO ASP SEQRES 1 B 312 GLY PRO TYR LEU GLN ILE LEU GLU GLN PRO LYS GLN ARG SEQRES 2 B 312 GLY PHE ARG PHE ARG TYR VAL CYS GLU GLY PRO SER HIS SEQRES 3 B 312 GLY GLY LEU PRO GLY ALA SER SER GLU LYS ASN LYS LYS SEQRES 4 B 312 SER TYR PRO GLN VAL LYS ILE CYS ASN TYR VAL GLY PRO SEQRES 5 B 312 ALA LYS VAL ILE VAL GLN LEU VAL THR ASN GLY LYS ASN SEQRES 6 B 312 ILE HIS LEU HIS ALA HIS SER LEU VAL GLY LYS HIS CYS SEQRES 7 B 312 GLU ASP GLY VAL CYS THR VAL THR ALA GLY PRO LYS ASP SEQRES 8 B 312 MET VAL VAL GLY PHE ALA ASN LEU GLY ILE LEU HIS VAL SEQRES 9 B 312 THR LYS LYS LYS VAL PHE GLU THR LEU GLU ALA ARG MET SEQRES 10 B 312 THR GLU ALA CYS ILE ARG GLY TYR ASN PRO GLY LEU LEU SEQRES 11 B 312 VAL HIS SER ASP LEU ALA TYR LEU GLN ALA GLU GLY GLY SEQRES 12 B 312 GLY ASP ARG GLN LEU THR ASP ARG GLU LYS GLU ILE ILE SEQRES 13 B 312 ARG GLN ALA ALA VAL GLN GLN THR LYS GLU MET ASP LEU SEQRES 14 B 312 SER VAL VAL ARG LEU MET PHE THR ALA PHE LEU PRO ASP SEQRES 15 B 312 SER THR GLY SER PHE THR ARG ARG LEU GLU PRO VAL VAL SEQRES 16 B 312 SER ASP ALA ILE TYR ASP SER LYS ALA PRO ASN ALA SER SEQRES 17 B 312 ASN LEU LYS ILE VAL ARG MET ASP ARG THR ALA GLY CYS SEQRES 18 B 312 VAL THR GLY GLY GLU GLU ILE TYR LEU LEU CYS ASP LYS SEQRES 19 B 312 VAL GLN LYS ASP ASP ILE GLN ILE ARG PHE TYR GLU GLU SEQRES 20 B 312 GLU GLU ASN GLY GLY VAL TRP GLU GLY PHE GLY ASP PHE SEQRES 21 B 312 SER PRO THR ASP VAL HIS ARG GLN PHE ALA ILE VAL PHE SEQRES 22 B 312 LYS THR PRO LYS TYR LYS ASP VAL ASN ILE THR LYS PRO SEQRES 23 B 312 ALA SER VAL PHE VAL GLN LEU ARG ARG LYS SER ASP LEU SEQRES 24 B 312 GLU THR SER GLU PRO LYS PRO PHE LEU TYR TYR PRO GLU
HELIX 1 1 LYS A 123 GLN A 135 5 13 HELIX 2 2 ILE A 145 GLN A 148 1 4 HELIX 3 3 GLN A 241 ASP A 243 5 3 HELIX 4 4 HIS A 245 GLN A 247 5 3 HELIX 5 5 LYS B 444 CYS B 459 5 16 HELIX 6 6 SER B 471 LEU B 473 5 3 HELIX 7 7 ASP B 488 ARG B 495 1 8 HELIX 8 8 ALA B 497 GLN B 500 1 4 HELIX 9 9 PRO B 543 ALA B 545 5 3 HELIX 10 10 PRO B 600 ASP B 602 5 3 HELIX 11 11 HIS B 604 GLN B 606 5 3
SHEET 1 A 2 THR A 60 LYS A 62 0 SHEET 2 A 2 ILE A 110 SER A 112 -1 N HIS A 111 O ILE A 61 SHEET 1 B 3 THR A 71 ARG A 73 0 SHEET 2 B 3 CYS A 160 THR A 164 -1 N THR A 164 O THR A 71 SHEET 3 B 3 PRO A 177 LEU A 179 -1 N VAL A 178 O PHE A 161 SHEET 1 C 2 GLU A 89 VAL A 91 0 SHEET 2 C 2 GLY A 117 GLN A 119 -1 N GLN A 119 O GLU A 89 SHEET 1 D 2 THR A 164 ARG A 166 0 SHEET 2 D 2 PRO A 172 LEU A 174 -1 N LEU A 173 O VAL A 165 SHEET 1 E 2 TYR A 227 THR A 229 0 SHEET 2 E 2 GLU A 234 ARG A 236 -1 N ALA A 235 O PHE A 228 SHEET 1 F 3 VAL B 431 GLY B 433 0 SHEET 2 F 3 GLN B 381 LYS B 383 -1 N VAL B 382 O VAL B 432 SHEET 3 F 3 GLN B 343 GLU B 346 -1 N GLU B 346 O GLN B 381 SHEET 1 G 4 CYS B 421 GLY B 426 0 SHEET 2 G 4 PRO B 390 VAL B 395 -1 N VAL B 395 O CYS B 421 SHEET 3 G 4 THR B 515 LEU B 518 -1 N PHE B 517 O LYS B 392 SHEET 4 G 4 ARG B 527 LEU B 529 -1 N LEU B 529 O ALA B 516 SHEET 1 H 2 SER B 410 GLY B 413 0 SHEET 2 H 2 LEU B 437 LEU B 440 -1 N LEU B 440 O SER B 410 SHEET 1 I 2 VAL B 509 ARG B 511 0 SHEET 2 I 2 ALA B 536 TYR B 538 -1 N ILE B 537 O VAL B 510 SHEET 1 J 2 ALA B 557 CYS B 559 0 SHEET 2 J 2 LEU B 646 TYR B 648 1 N LEU B 646 O GLY B 558 SHEET 1 K 2 GLU B 565 LEU B 569 0 SHEET 2 K 2 ALA B 608 LYS B 612 -1 N PHE B 611 O ILE B 566 SHEET 1 L 3 PHE B 628 GLN B 630 0 SHEET 2 L 3 ARG B 581 GLU B 585 -1 N TYR B 583 O PHE B 628 SHEET 3 L 3 VAL B 591 GLY B 594 -1 N GLY B 594 O PHE B 582
SSBOND 1 CYS B 416 CYS B 421 1555 1555 2.03
CRYST1 106.610 106.610 206.560 90.00 90.00 90.00 P 43 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009380 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009380 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004841 0.00000