1VEK - Header Asymmetric Unit

HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-MAR-04 1VEK

TITLE SOLUTION STRUCTURE OF RSGI RUH-011, A UBA DOMAIN FROM TITLE 2 ARABIDOPSIS CDNA

COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-SPECIFIC PROTEASE 14, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBA DOMAIN; COMPND 5 SYNONYM: UBP14; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ARABIDOPSIS THALIANA GENOMIC DNA, CHROMOSOME 3, TAC SOURCE 6 CLONE: K10D20; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P030224-52; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS SYSTEM

KEYWDS UBA DOMAIN, THREE HELIX BUNDLE, UBIQUITIN ASSOCIATED DOMAIN, KEYWDS 2 UBIQUITIN SPECIFIC PROTEASE 14, STRUCTURAL GENOMICS, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN KEYWDS 4 FUNCTION

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR Y.HIGUCHI,T.ABE,H.HIROTA,K.SAITO,S.KOSHIBA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)

REVDAT 2 24-FEB-09 1VEK 1 VERSN REVDAT 1 30-SEP-04 1VEK 0

JRNL AUTH Y.HIGUCHI,T.ABE,H.HIROTA,K.SAITO,S.KOSHIBA, JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-011, A UBA DOMAIN JRNL TITL 2 FROM ARABIDOPSIS CDNA JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.8 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1VEK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-04. REMARK 100 THE RCSB ID CODE IS RCSB006530.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM UBA DOMAIN U-15N, 13C; REMARK 210 20MM PINA; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.853 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 113.62 -172.67 REMARK 500 1 SER A 6 122.26 179.17 REMARK 500 1 GLU A 10 155.86 58.76 REMARK 500 1 LEU A 11 150.59 60.87 REMARK 500 1 GLU A 18 143.95 61.20 REMARK 500 1 GLU A 19 102.10 59.62 REMARK 500 1 ALA A 24 75.41 -169.13 REMARK 500 1 ALA A 28 88.23 -62.89 REMARK 500 1 ALA A 49 -70.73 -39.28 REMARK 500 1 SER A 54 28.57 44.24 REMARK 500 1 ASP A 70 59.54 -106.82 REMARK 500 1 SER A 83 119.72 -175.64 REMARK 500 2 LEU A 12 99.86 -39.46 REMARK 500 2 ASP A 14 89.30 40.47 REMARK 500 2 GLU A 18 158.36 -40.23 REMARK 500 2 ALA A 24 88.24 -57.72 REMARK 500 2 ALA A 28 91.74 -52.53 REMARK 500 2 SER A 54 35.69 37.33 REMARK 500 2 ASP A 70 57.10 -102.71 REMARK 500 2 SER A 82 105.13 -43.03 REMARK 500 3 SER A 2 -58.59 -165.24 REMARK 500 3 SER A 3 169.35 59.91 REMARK 500 3 SER A 5 146.87 63.34 REMARK 500 3 GLU A 10 101.01 179.68 REMARK 500 3 LEU A 11 82.05 44.15 REMARK 500 3 ASP A 14 99.07 170.41 REMARK 500 3 GLU A 18 71.85 -68.60 REMARK 500 3 GLU A 19 86.06 -173.86 REMARK 500 3 SER A 23 146.16 -175.54 REMARK 500 3 ALA A 28 90.44 -55.12 REMARK 500 3 ALA A 49 -71.66 -40.13 REMARK 500 3 ASP A 70 54.75 -102.82 REMARK 500 4 SER A 2 143.00 -170.59 REMARK 500 4 GLU A 9 -39.65 -172.85 REMARK 500 4 GLU A 10 80.12 39.86 REMARK 500 4 LEU A 11 159.50 -48.71 REMARK 500 4 PRO A 13 -89.62 -75.00 REMARK 500 4 GLU A 18 121.39 60.63 REMARK 500 4 GLU A 19 99.15 -173.04 REMARK 500 4 VAL A 20 142.21 -174.34 REMARK 500 4 ALA A 24 82.96 56.30 REMARK 500 4 ALA A 28 91.33 -52.63 REMARK 500 4 ALA A 49 -71.58 -38.77 REMARK 500 4 SER A 54 32.32 39.87 REMARK 500 4 ASP A 70 57.14 -102.72 REMARK 500 4 SER A 79 78.04 -110.52 REMARK 500 4 SER A 83 -59.21 -157.67 REMARK 500 5 GLU A 9 105.84 -49.51 REMARK 500 5 LEU A 11 128.05 64.30 REMARK 500 5 GLU A 19 74.86 -179.49 REMARK 500 5 GLU A 22 94.60 -162.45 REMARK 500 5 ALA A 24 99.98 -55.43 REMARK 500 5 ALA A 28 90.59 -56.60 REMARK 500 5 ALA A 49 -70.23 -43.95 REMARK 500 5 SER A 54 28.35 43.87 REMARK 500 5 ASP A 70 63.45 -103.43 REMARK 500 5 SER A 79 71.80 -155.44 REMARK 500 5 SER A 82 111.01 -163.77 REMARK 500 6 SER A 2 -68.26 -162.85 REMARK 500 6 GLU A 9 -72.31 81.59 REMARK 500 6 GLU A 10 150.63 68.69 REMARK 500 6 LEU A 11 121.69 79.08 REMARK 500 6 VAL A 16 106.57 -49.47 REMARK 500 6 VAL A 20 35.61 -92.98 REMARK 500 6 SER A 23 101.06 -51.81 REMARK 500 6 ALA A 24 102.02 -176.29 REMARK 500 6 ALA A 28 91.16 -53.30 REMARK 500 6 ASN A 29 128.14 -39.60 REMARK 500 6 ALA A 49 -71.24 -40.17 REMARK 500 6 SER A 54 36.59 37.53 REMARK 500 6 ASP A 70 60.36 -104.29 REMARK 500 6 SER A 79 67.23 -161.62 REMARK 500 6 SER A 82 -60.76 -150.37 REMARK 500 7 GLU A 9 -44.84 -131.91 REMARK 500 7 ASP A 14 91.79 175.13 REMARK 500 7 VAL A 20 149.52 -170.47 REMARK 500 7 GLU A 22 67.97 -174.13 REMARK 500 7 SER A 23 79.88 40.04 REMARK 500 7 ALA A 28 91.11 -53.91 REMARK 500 7 ALA A 49 -71.73 -38.88 REMARK 500 7 ASP A 70 59.06 -104.85 REMARK 500 7 SER A 83 108.09 -49.19 REMARK 500 8 SER A 3 159.28 -47.13 REMARK 500 8 GLU A 10 133.50 -39.22 REMARK 500 8 VAL A 20 150.80 63.56 REMARK 500 8 GLU A 22 57.59 -91.68 REMARK 500 8 SER A 23 97.11 178.68 REMARK 500 8 ALA A 24 102.68 177.95 REMARK 500 8 ALA A 28 89.36 -59.25 REMARK 500 8 ALA A 49 -72.14 -40.19 REMARK 500 8 SER A 54 27.49 43.84 REMARK 500 8 ASP A 70 60.86 -104.55 REMARK 500 9 GLU A 10 77.49 44.84 REMARK 500 9 ASP A 14 90.19 178.23 REMARK 500 9 VAL A 16 107.59 -52.27 REMARK 500 9 GLU A 18 153.93 -41.89 REMARK 500 9 VAL A 20 168.32 55.51 REMARK 500 9 SER A 23 90.92 -65.94 REMARK 500 9 GLN A 25 152.55 88.41 REMARK 500 9 ALA A 28 91.08 -53.28 REMARK 500 9 ASN A 29 130.13 -39.07 REMARK 500 9 SER A 54 34.81 36.99 REMARK 500 9 ASP A 70 59.69 -112.06 REMARK 500 9 SER A 82 -58.18 -136.79 REMARK 500 9 SER A 83 103.24 62.40 REMARK 500 10 SER A 2 93.39 -166.78 REMARK 500 10 SER A 5 126.20 -175.72 REMARK 500 10 LEU A 11 80.44 -176.77 REMARK 500 10 LEU A 12 102.54 -174.80 REMARK 500 10 ASP A 14 104.69 174.29 REMARK 500 10 GLU A 18 -161.18 41.66 REMARK 500 10 GLU A 22 176.78 -48.85 REMARK 500 10 SER A 23 116.58 -39.48 REMARK 500 10 ALA A 24 78.65 -115.30 REMARK 500 10 GLN A 25 151.37 87.72 REMARK 500 10 ALA A 28 88.19 -62.61 REMARK 500 10 ALA A 49 -72.25 -38.89 REMARK 500 10 SER A 54 27.45 44.61 REMARK 500 10 ASP A 70 46.89 -104.40 REMARK 500 10 SER A 79 75.66 -156.72 REMARK 500 11 SER A 2 124.00 -173.59 REMARK 500 11 SER A 3 -57.77 -138.82 REMARK 500 11 SER A 6 105.55 55.46 REMARK 500 11 GLU A 9 -45.10 -148.53 REMARK 500 11 GLU A 19 125.74 166.87 REMARK 500 11 ALA A 24 87.19 -175.24 REMARK 500 11 ALA A 28 93.48 -50.83 REMARK 500 11 SER A 54 30.97 38.02 REMARK 500 11 ASP A 70 56.68 -104.81 REMARK 500 11 SER A 79 75.65 -151.65 REMARK 500 11 SER A 82 86.21 58.18 REMARK 500 12 SER A 2 147.81 -172.12 REMARK 500 12 GLU A 9 -63.27 68.92 REMARK 500 12 GLU A 10 134.23 66.60 REMARK 500 12 VAL A 16 150.85 60.71 REMARK 500 12 GLU A 18 48.10 -177.73 REMARK 500 12 GLU A 19 114.08 -172.73 REMARK 500 12 VAL A 20 148.16 -172.82 REMARK 500 12 SER A 23 84.21 66.45 REMARK 500 12 GLN A 25 146.32 86.79 REMARK 500 12 ALA A 28 91.43 -53.19 REMARK 500 12 PHE A 41 174.19 -59.37 REMARK 500 12 ALA A 49 -70.44 -42.82 REMARK 500 12 SER A 54 36.05 37.38 REMARK 500 12 ASP A 70 59.33 -105.53 REMARK 500 13 SER A 3 -58.97 -145.63 REMARK 500 13 SER A 5 -58.22 -136.59 REMARK 500 13 LEU A 11 139.70 62.04 REMARK 500 13 LEU A 12 141.82 69.50 REMARK 500 13 ASP A 14 80.81 -152.29 REMARK 500 13 GLU A 19 93.16 58.84 REMARK 500 13 GLU A 22 160.24 58.62 REMARK 500 13 SER A 23 78.97 -66.67 REMARK 500 13 GLN A 25 151.31 85.64 REMARK 500 13 ALA A 28 88.62 -61.84 REMARK 500 13 ALA A 49 -73.73 -37.89 REMARK 500 13 SER A 54 27.97 43.20 REMARK 500 13 ASP A 70 57.00 -106.13 REMARK 500 13 SER A 79 73.10 -159.49 REMARK 500 14 SER A 5 -60.21 -159.75 REMARK 500 14 SER A 6 82.55 43.67 REMARK 500 14 GLU A 19 57.08 -142.81 REMARK 500 14 MET A 21 170.99 53.11 REMARK 500 14 SER A 23 114.02 58.88 REMARK 500 14 ALA A 28 89.13 -61.34 REMARK 500 14 ASN A 29 146.81 -39.61 REMARK 500 14 ALA A 49 -71.10 -38.60 REMARK 500 14 SER A 54 27.12 42.99 REMARK 500 14 ASP A 70 41.22 -107.93 REMARK 500 15 SER A 2 -58.26 -135.21 REMARK 500 15 SER A 5 138.04 -177.92 REMARK 500 15 ASP A 14 99.36 -174.80 REMARK 500 15 VAL A 16 128.84 -173.99 REMARK 500 15 GLU A 18 73.85 -174.98 REMARK 500 15 GLU A 19 66.73 -163.84 REMARK 500 15 VAL A 20 80.01 39.88 REMARK 500 15 SER A 23 79.01 -107.33 REMARK 500 15 ALA A 24 70.02 -179.51 REMARK 500 15 ALA A 28 92.18 -51.57 REMARK 500 15 ASN A 29 127.23 -38.73 REMARK 500 15 SER A 54 36.26 38.08 REMARK 500 15 ASP A 70 55.97 -106.70 REMARK 500 15 SER A 82 174.58 52.52 REMARK 500 15 SER A 83 100.91 53.25 REMARK 500 16 SER A 6 -57.47 -165.65 REMARK 500 16 GLU A 9 -51.49 82.01 REMARK 500 16 LEU A 11 57.72 -94.55 REMARK 500 16 LEU A 12 113.03 57.41 REMARK 500 16 ASP A 14 -58.72 174.64 REMARK 500 16 VAL A 16 108.81 -171.85 REMARK 500 16 GLU A 18 77.99 -118.04 REMARK 500 16 MET A 21 47.23 -83.99 REMARK 500 16 GLU A 22 160.82 179.13 REMARK 500 16 SER A 23 97.19 -59.24 REMARK 500 16 GLN A 25 147.13 87.12 REMARK 500 16 ALA A 28 90.20 -57.80 REMARK 500 16 ASP A 70 46.36 -104.70 REMARK 500 17 SER A 3 158.63 61.19 REMARK 500 17 SER A 6 115.55 -178.78 REMARK 500 17 LEU A 11 57.10 -99.43 REMARK 500 17 GLU A 19 -144.57 -127.16 REMARK 500 17 ALA A 24 61.22 73.55 REMARK 500 17 ALA A 28 91.50 -56.08 REMARK 500 17 ALA A 49 -70.99 -41.90 REMARK 500 17 SER A 54 30.08 38.79 REMARK 500 17 ASP A 70 53.58 -105.32 REMARK 500 18 SER A 2 83.19 43.84 REMARK 500 18 SER A 3 93.44 45.67 REMARK 500 18 LEU A 11 70.25 40.90 REMARK 500 18 LEU A 12 125.82 62.23 REMARK 500 18 PRO A 13 -81.65 -75.03 REMARK 500 18 ASP A 14 73.42 63.74 REMARK 500 18 SER A 23 77.92 165.36 REMARK 500 18 ALA A 24 75.18 -163.59 REMARK 500 18 GLN A 25 153.60 88.28 REMARK 500 18 ALA A 28 89.75 -59.67 REMARK 500 18 ASN A 29 146.06 -39.96 REMARK 500 18 ALA A 49 -71.31 -39.24 REMARK 500 18 SER A 54 28.57 42.29 REMARK 500 18 ASP A 70 58.99 -105.31 REMARK 500 18 SER A 79 62.17 67.07 REMARK 500 18 SER A 83 -56.76 -141.89 REMARK 500 19 SER A 3 -58.53 -130.35 REMARK 500 19 SER A 5 -59.97 -150.54 REMARK 500 19 SER A 6 123.59 66.87 REMARK 500 19 GLU A 10 121.80 63.42 REMARK 500 19 LEU A 11 75.33 -155.78 REMARK 500 19 ASP A 14 111.69 -179.36 REMARK 500 19 GLU A 18 131.17 -177.99 REMARK 500 19 GLU A 19 87.73 -171.36 REMARK 500 19 GLU A 22 74.88 -164.18 REMARK 500 19 ALA A 24 74.14 -156.30 REMARK 500 19 ALA A 28 89.60 -55.88 REMARK 500 19 ASN A 29 129.17 -39.50 REMARK 500 19 ALA A 49 -71.76 -30.31 REMARK 500 19 ALA A 56 48.93 -82.65 REMARK 500 19 ASP A 70 58.99 -103.49 REMARK 500 19 SER A 82 82.01 -179.45 REMARK 500 19 SER A 83 148.41 -172.69 REMARK 500 20 SER A 5 94.15 62.55 REMARK 500 20 GLU A 9 84.25 36.95 REMARK 500 20 GLU A 18 165.97 56.01 REMARK 500 20 VAL A 20 144.70 64.31 REMARK 500 20 SER A 23 174.35 -54.08 REMARK 500 20 ALA A 24 57.14 82.90 REMARK 500 20 GLN A 25 152.06 87.96 REMARK 500 20 ALA A 28 88.42 -58.79 REMARK 500 20 ASN A 29 123.38 -39.00 REMARK 500 20 ALA A 49 -71.65 -30.97 REMARK 500 20 ASP A 70 56.18 -103.02 REMARK 500 20 SER A 82 116.13 61.86 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ATR001010759.1 RELATED DB: TARGETDB

DBREF 1VEK A 8 78 UNP Q8L6Y1 Q8L6Y1_ARATH 594 664

SEQADV 1VEK GLY A 1 UNP Q8L6Y1 CLONING ARTIFACT SEQADV 1VEK SER A 2 UNP Q8L6Y1 CLONING ARTIFACT SEQADV 1VEK SER A 3 UNP Q8L6Y1 CLONING ARTIFACT SEQADV 1VEK GLY A 4 UNP Q8L6Y1 CLONING ARTIFACT SEQADV 1VEK SER A 5 UNP Q8L6Y1 CLONING ARTIFACT SEQADV 1VEK SER A 6 UNP Q8L6Y1 CLONING ARTIFACT SEQADV 1VEK GLY A 7 UNP Q8L6Y1 CLONING ARTIFACT SEQADV 1VEK SER A 79 UNP Q8L6Y1 CLONING ARTIFACT SEQADV 1VEK GLY A 80 UNP Q8L6Y1 CLONING ARTIFACT SEQADV 1VEK PRO A 81 UNP Q8L6Y1 CLONING ARTIFACT SEQADV 1VEK SER A 82 UNP Q8L6Y1 CLONING ARTIFACT SEQADV 1VEK SER A 83 UNP Q8L6Y1 CLONING ARTIFACT SEQADV 1VEK GLY A 84 UNP Q8L6Y1 CLONING ARTIFACT

SEQRES 1 A 84 GLY SER SER GLY SER SER GLY GLY GLU GLU LEU LEU PRO SEQRES 2 A 84 ASP GLY VAL PRO GLU GLU VAL MET GLU SER ALA GLN PRO SEQRES 3 A 84 VAL ALA ASN GLU GLU ILE VAL ALA GLN LEU VAL SER MET SEQRES 4 A 84 GLY PHE SER GLN LEU HIS CYS GLN LYS ALA ALA ILE ASN SEQRES 5 A 84 THR SER ASN ALA GLY VAL GLU GLU ALA MET ASN TRP LEU SEQRES 6 A 84 LEU SER HIS MET ASP ASP PRO ASP ILE ASP ALA PRO ILE SEQRES 7 A 84 SER GLY PRO SER SER GLY

HELIX 1 1 ASN A 29 GLY A 40 1 12 HELIX 2 2 SER A 42 THR A 53 1 12 HELIX 3 3 GLY A 57 MET A 69 1 13

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000