10 20 30 40 50 60 70 80 1VEA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 29-MAR-04 1VEA
TITLE CRYSTAL STRUCTURE OF HUTP, AN RNA BINDING ANTITERMINATION PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUT OPERON POSITIVE REGULATORY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RNA-BINDING, ANTITERMINATOR PROTEIN; COMPND 5 SYNONYM: HUTP; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET5A, PETHP4
KEYWDS HUTP, ANTITERMINATOR, RNA BINDING PROTEIN, REGULATION OF KEYWDS 2 TRANSCRIPTION
EXPDTA X-RAY DIFFRACTION
AUTHOR T.S.KUMAREVEL,Z.FUJIMOTO,P.KARTHE,M.ODA,H.MIZUNO,P.K.R.KUMAR
REVDAT 3 13-JUL-11 1VEA 1 VERSN REVDAT 2 24-FEB-09 1VEA 1 VERSN REVDAT 1 20-JUL-04 1VEA 0
JRNL AUTH T.S.KUMAREVEL,Z.FUJIMOTO,P.KARTHE,M.ODA,H.MIZUNO,P.K.R.KUMAR JRNL TITL CRYSTAL STRUCTURE OF ACTIVATED HUTP; AN RNA BINDING PROTEIN JRNL TITL 2 THAT REGULATES TRANSCRIPTION OF THE HUT OPERON IN BACILLUS JRNL TITL 3 SUBTILIS JRNL REF STRUCTURE V. 12 1269 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15242603 JRNL DOI 10.1016/J.STR.2004.05.005
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.S.KUMAREVEL,Z.FUJIMOTO,B.PADMANABHAN,M.ODA,S.NISHIKAWA, REMARK 1 AUTH 2 H.MIZUNO,P.K.R.KUMAR REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 HUTP PROTEIN: AN RNA-BINDING PROTEIN THAT REGULATES THE REMARK 1 TITL 3 TRANSCRIPTION OF HUT OPERON IN BACILLUS SUBTILIS REMARK 1 REF J.STRUCT.BIOL. V. 138 237 2002 REMARK 1 REFN ISSN 1047-8477 REMARK 1 PMID 12217662 REMARK 1 DOI 10.1016/S1047-8477(02)00024-2 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.ODA,N.KOBAYASHI,A.ITO,Y.KURUSU,K.TAIRA REMARK 1 TITL CIS-ACTING REGULATORY SEQUENCES FOR ANTITERMINATION IN THE REMARK 1 TITL 2 TRANSCRIPT OF THE BACILLUS SUBTILIS HUT OPERON AND REMARK 1 TITL 3 HISTIDINE-DEPENDENT BINDING OF HUTP TO THE TRANSCRIPT REMARK 1 TITL 4 CONTAINING THE REGULATORY SEQUENCES REMARK 1 REF MOL.MICROBIOL. V. 35 1244 2000 REMARK 1 REFN ISSN 0950-382X REMARK 1 PMID 10712704 REMARK 1 DOI 10.1046/J.1365-2958.2000.01795.X
REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1236996.060 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 398 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1155 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 53 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.059 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2143 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.63 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.76 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.860 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.350 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.860 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.030 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.26 REMARK 3 BSOL : 26.06 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : BETA_NAPHTHYLAMIDE.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : BETA_NAPHTHYLAMIDE.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1VEA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-APR-04. REMARK 100 THE RCSB ID CODE IS RCSB006520.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978, 1.007, 0.995, 0.950 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7375 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 31.803 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 101.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.25800 REMARK 200 R SYM FOR SHELL (I) : 0.23900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2000MME, POTTASIUM BROMIDE, NA REMARK 280 CACODYLATE, PH 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.70500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.70500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.70500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.70500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 47.70500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 47.70500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 47.70500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 47.70500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 47.70500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 47.70500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 47.70500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 47.70500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 47.70500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 47.70500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 47.70500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 47.70500 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: Z,X,Y AND Y,Z,X.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -47.70500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -47.70500 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -47.70500 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 47.70500
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 HIS A 4 REMARK 465 LYS A 5 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LEU B 3 REMARK 465 HIS B 4
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 98 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 SER A 114 OG REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 ILE A 133 CG1 CG2 CD1 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 TYR B 69 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 96 CG CD1 CD2 REMARK 470 LEU B 97 CG CD1 CD2 REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 SER B 114 OG REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 GLU B 117 CG CD OE1 OE2 REMARK 470 LYS B 134 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 110 N TYR B 112 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 7 69.55 -155.25 REMARK 500 ASN A 19 88.42 -68.90 REMARK 500 ALA A 21 -79.57 -52.68 REMARK 500 GLU A 22 66.99 -165.33 REMARK 500 GLU A 23 -25.56 -37.83 REMARK 500 LYS A 60 -8.74 -51.37 REMARK 500 SER A 66 -17.58 -43.72 REMARK 500 THR A 99 70.12 41.82 REMARK 500 ALA A 116 103.16 -47.21 REMARK 500 ILE A 133 -85.09 -109.21 REMARK 500 LYS A 134 -19.36 -42.98 REMARK 500 ARG B 7 41.95 -91.89 REMARK 500 CYS B 38 123.69 172.74 REMARK 500 ARG B 88 -89.11 -47.03 REMARK 500 SER B 95 72.18 -158.40 REMARK 500 PRO B 111 72.35 -63.07 REMARK 500 TYR B 112 -67.41 -29.23 REMARK 500 GLU B 113 -126.55 63.33 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 183 DISTANCE = 5.55 ANGSTROMS REMARK 525 HOH B1034 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B1038 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH B1042 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH B1043 DISTANCE = 5.02 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBN B 1001
DBREF 1VEA A 1 148 UNP P10943 HUTP_BACSU 4 151 DBREF 1VEA B 1 148 UNP P10943 HUTP_BACSU 4 151
SEQADV 1VEA ILE A 51 UNP P10943 VAL 54 ENGINEERED SEQADV 1VEA ILE B 51 UNP P10943 VAL 54 ENGINEERED
SEQRES 1 A 148 MET THR LEU HIS LYS GLU ARG ARG ILE GLY ARG LEU SER SEQRES 2 A 148 VAL LEU LEU LEU LEU ASN GLU ALA GLU GLU SER THR GLN SEQRES 3 A 148 VAL GLU GLU LEU GLU ARG ASP GLY TRP LYS VAL CYS LEU SEQRES 4 A 148 GLY LYS VAL GLY SER MET ASP ALA HIS LYS VAL ILE ALA SEQRES 5 A 148 ALA ILE GLU THR ALA SER LYS LYS SER GLY VAL ILE GLN SEQRES 6 A 148 SER GLU GLY TYR ARG GLU SER HIS ALA LEU TYR HIS ALA SEQRES 7 A 148 THR MET GLU ALA LEU HIS GLY VAL THR ARG GLY GLU MET SEQRES 8 A 148 LEU LEU GLY SER LEU LEU ARG THR VAL GLY LEU ARG PHE SEQRES 9 A 148 ALA VAL LEU ARG GLY ASN PRO TYR GLU SER GLU ALA GLU SEQRES 10 A 148 GLY ASP TRP ILE ALA VAL SER LEU TYR GLY THR ILE GLY SEQRES 11 A 148 ALA PRO ILE LYS GLY LEU GLU HIS GLU THR PHE GLY VAL SEQRES 12 A 148 GLY ILE ASN HIS ILE SEQRES 1 B 148 MET THR LEU HIS LYS GLU ARG ARG ILE GLY ARG LEU SER SEQRES 2 B 148 VAL LEU LEU LEU LEU ASN GLU ALA GLU GLU SER THR GLN SEQRES 3 B 148 VAL GLU GLU LEU GLU ARG ASP GLY TRP LYS VAL CYS LEU SEQRES 4 B 148 GLY LYS VAL GLY SER MET ASP ALA HIS LYS VAL ILE ALA SEQRES 5 B 148 ALA ILE GLU THR ALA SER LYS LYS SER GLY VAL ILE GLN SEQRES 6 B 148 SER GLU GLY TYR ARG GLU SER HIS ALA LEU TYR HIS ALA SEQRES 7 B 148 THR MET GLU ALA LEU HIS GLY VAL THR ARG GLY GLU MET SEQRES 8 B 148 LEU LEU GLY SER LEU LEU ARG THR VAL GLY LEU ARG PHE SEQRES 9 B 148 ALA VAL LEU ARG GLY ASN PRO TYR GLU SER GLU ALA GLU SEQRES 10 B 148 GLY ASP TRP ILE ALA VAL SER LEU TYR GLY THR ILE GLY SEQRES 11 B 148 ALA PRO ILE LYS GLY LEU GLU HIS GLU THR PHE GLY VAL SEQRES 12 B 148 GLY ILE ASN HIS ILE
HET HBN B1001 21
HETNAM HBN N-(2-NAPHTHYL)HISTIDINAMIDE
HETSYN HBN L-HISTIDINE BETA NAPHTHYLAMIDE
FORMUL 3 HBN C16 H16 N4 O FORMUL 4 HOH *83(H2 O)
HELIX 1 1 ARG A 8 ASN A 19 1 12 HELIX 2 2 GLU A 22 ARG A 32 1 11 HELIX 3 3 ASP A 46 LYS A 60 1 15 HELIX 4 4 GLY A 68 THR A 87 1 20 HELIX 5 5 GLU A 90 LEU A 97 1 8 HELIX 6 6 ARG B 8 ASN B 19 1 12 HELIX 7 7 GLU B 22 ARG B 32 1 11 HELIX 8 8 ASP B 46 SER B 61 1 16 HELIX 9 9 TYR B 69 THR B 87 1 19 HELIX 10 10 GLY B 89 GLY B 94 1 6
SHEET 1 A 4 LYS A 36 VAL A 42 0 SHEET 2 A 4 VAL A 100 GLY A 109 -1 O LEU A 102 N VAL A 42 SHEET 3 A 4 TRP A 120 ILE A 129 -1 O THR A 128 N GLY A 101 SHEET 4 A 4 HIS A 138 HIS A 147 -1 O THR A 140 N GLY A 127 SHEET 1 B 4 LEU B 39 VAL B 42 0 SHEET 2 B 4 VAL B 100 GLY B 109 -1 O LEU B 102 N VAL B 42 SHEET 3 B 4 TRP B 120 GLY B 130 -1 O TYR B 126 N ARG B 103 SHEET 4 B 4 GLU B 137 HIS B 147 -1 O GLY B 142 N LEU B 125
SITE 1 AC1 10 GLY A 85 ARG A 88 GLU A 139 THR A 140 SITE 2 AC1 10 PHE A 141 GLU B 81 HIS B 84 GLY B 85 SITE 3 AC1 10 VAL B 143 HOH B1003
CRYST1 95.410 95.410 95.410 90.00 90.00 90.00 P 21 3 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010481 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010481 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010481 0.00000