10 20 30 40 50 60 70 80 1VD2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 18-MAR-04 1VD2
TITLE SOLUTION STRUCTURE OF THE PB1 DOMAIN OF PKCIOTA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE C, IOTA TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PB1 DOMAIN; COMPND 5 EC: 2.7.1.37; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PKCIOTA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1
KEYWDS KINASE, PB1 DOMAIN, OPCA MOTIF, APKC, ZIP/P62, MEK5, KEYWDS 2 MOLECULAR RECOGNITION, TRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR Y.HIRANO,S.YOSHINAGA,M.YOKOCHI,K.OGURA,Y.NODA,H.SUMIMOTO, AUTHOR 2 F.INAGAKI
REVDAT 2 24-FEB-09 1VD2 1 VERSN REVDAT 1 14-SEP-04 1VD2 0
JRNL AUTH Y.HIRANO,S.YOSHINAGA,K.OGURA,M.YOKOCHI,Y.NODA, JRNL AUTH 2 H.SUMIMOTO,F.INAGAKI JRNL TITL SOLUTION STRUCTURE OF ATYPICAL PROTEIN KINASE C JRNL TITL 2 PB1 DOMAIN AND ITS MODE OF INTERACTION WITH JRNL TITL 3 ZIP/P62 AND MEK5 JRNL REF J.BIOL.CHEM. V. 279 31883 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15143057 JRNL DOI 10.1074/JBC.M403092200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : J.P.LINGE, S.I.O'DONOGHUE, M.NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1VD2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB006480.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50MM PHOSPHATE BUFFER; 150MM REMARK 210 SODIUM CHLORIDE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PKCIOTA PB1 U-15N, U-13C; REMARK 210 50MM PHOSPHATE BUFFER; 150MM REMARK 210 SODIUM CHLORIDE; 5MM REMARK 210 DITIOTHREITOL; 0.05%(W/V) REMARK 210 SODIUM AZIDE; 90% H2O, 10% REMARK 210 D2O; 1MM PKCIOTA PB1 U-15N, U- REMARK 210 13C; 50MM PHOSPHATE BUFFER; REMARK 210 150MM SODIUM CHLORIDE; 5MM REMARK 210 DITIOTHREITOL; 0.05%(W/V) REMARK 210 SODIUM AZIDE; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS, INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, NMRPIPE, OLIVIA, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 50 89.95 57.33 REMARK 500 1 PHE A 51 -168.95 -116.62 REMARK 500 1 GLU A 54 -0.65 -165.08 REMARK 500 1 ASP A 63 -157.28 -80.93 REMARK 500 1 ASN A 87 59.04 -142.76 REMARK 500 1 LYS A 88 -87.34 61.13 REMARK 500 2 SER A 15 -49.04 -170.42 REMARK 500 2 PRO A 34 33.71 -77.94 REMARK 500 2 SER A 35 11.53 -144.27 REMARK 500 2 SER A 50 89.51 57.24 REMARK 500 2 SER A 72 38.01 -151.52 REMARK 500 2 LYS A 88 -82.28 63.69 REMARK 500 2 GLU A 91 100.71 59.23 REMARK 500 3 SER A 15 -49.90 -166.92 REMARK 500 3 SER A 50 95.51 59.39 REMARK 500 3 ASN A 53 13.18 59.37 REMARK 500 3 GLU A 54 -12.30 -141.29 REMARK 500 3 PRO A 68 95.71 -58.73 REMARK 500 3 THR A 70 109.87 -46.30 REMARK 500 3 ASN A 87 58.34 -160.75 REMARK 500 3 LYS A 88 -94.90 56.58 REMARK 500 4 SER A 15 23.25 -154.78 REMARK 500 4 ARG A 24 18.41 59.57 REMARK 500 4 SER A 35 31.90 -148.52 REMARK 500 4 SER A 50 92.86 57.71 REMARK 500 4 GLU A 54 -3.35 -161.84 REMARK 500 4 THR A 70 103.20 -48.06 REMARK 500 4 ASP A 89 -28.88 -144.42 REMARK 500 4 SER A 90 19.02 57.87 REMARK 500 4 GLU A 91 127.20 -171.18 REMARK 500 5 SER A 15 -33.53 74.03 REMARK 500 5 SER A 50 93.97 59.58 REMARK 500 5 PHE A 51 -166.16 -124.89 REMARK 500 5 GLU A 54 -2.12 -142.85 REMARK 500 5 ASP A 63 -159.55 -71.30 REMARK 500 5 PRO A 68 95.06 -56.29 REMARK 500 5 THR A 70 107.92 -53.53 REMARK 500 5 SER A 72 21.47 -149.65 REMARK 500 5 GLU A 91 117.07 -167.36 REMARK 500 6 LEU A 13 -146.65 57.51 REMARK 500 6 SER A 15 -39.73 -167.04 REMARK 500 6 SER A 50 92.78 58.93 REMARK 500 6 PHE A 51 -166.01 -123.34 REMARK 500 6 GLU A 54 -5.58 -141.70 REMARK 500 7 SER A 15 -52.50 -165.69 REMARK 500 7 PHE A 32 -167.99 -128.41 REMARK 500 7 SER A 50 82.04 54.22 REMARK 500 7 GLU A 54 5.45 -162.74 REMARK 500 7 PHE A 57 142.77 -174.82 REMARK 500 7 ASP A 63 -151.54 -81.15 REMARK 500 7 SER A 72 45.41 -79.49 REMARK 500 7 GLU A 91 143.82 -175.82 REMARK 500 8 LEU A 13 88.48 57.91 REMARK 500 8 SER A 15 21.56 -152.92 REMARK 500 8 PRO A 34 40.04 -78.74 REMARK 500 8 SER A 35 17.75 -154.27 REMARK 500 8 SER A 50 90.53 57.11 REMARK 500 8 ASN A 53 8.24 59.94 REMARK 500 8 GLU A 54 -7.60 -140.65 REMARK 500 8 ASP A 63 -156.68 -73.87 REMARK 500 8 PRO A 68 88.18 -61.84 REMARK 500 8 SER A 72 49.81 -81.33 REMARK 500 8 LEU A 86 -156.43 -126.13 REMARK 500 8 LYS A 88 -84.69 62.14 REMARK 500 8 GLU A 91 90.99 56.15 REMARK 500 9 SER A 15 -52.58 -159.06 REMARK 500 9 SER A 35 59.55 -107.20 REMARK 500 9 SER A 50 93.35 58.38 REMARK 500 9 PHE A 51 -165.51 -124.16 REMARK 500 9 PHE A 57 145.99 -171.95 REMARK 500 9 ASP A 89 -96.08 -108.21 REMARK 500 9 SER A 90 -61.40 -177.47 REMARK 500 10 SER A 15 -41.52 -167.32 REMARK 500 10 PRO A 34 21.19 -79.34 REMARK 500 10 SER A 35 11.07 -141.10 REMARK 500 10 SER A 50 92.25 57.93 REMARK 500 10 GLU A 54 0.78 -159.67 REMARK 500 10 ASP A 63 -156.71 -75.77 REMARK 500 10 THR A 70 106.40 -48.58 REMARK 500 10 LYS A 88 -91.13 57.69 REMARK 500 11 SER A 15 13.57 -142.68 REMARK 500 11 SER A 50 98.48 59.42 REMARK 500 11 PHE A 51 -169.70 -120.76 REMARK 500 11 ASN A 53 18.41 56.30 REMARK 500 11 GLU A 54 0.45 -168.43 REMARK 500 11 ASP A 63 -159.28 -88.67 REMARK 500 11 SER A 72 28.31 -146.37 REMARK 500 11 GLU A 91 116.82 -162.89 REMARK 500 12 SER A 15 -40.56 -162.69 REMARK 500 12 SER A 35 27.59 -172.29 REMARK 500 12 SER A 50 92.29 58.79 REMARK 500 12 GLU A 54 -10.14 -143.03 REMARK 500 12 PRO A 68 93.30 -65.27 REMARK 500 12 SER A 72 30.38 -78.80 REMARK 500 12 ASN A 87 72.95 57.96 REMARK 500 12 ASP A 89 -38.03 -155.37 REMARK 500 12 SER A 90 18.60 56.75 REMARK 500 12 GLU A 91 104.55 -171.64 REMARK 500 13 SER A 50 89.51 56.89 REMARK 500 13 GLU A 54 -8.60 -141.71 REMARK 500 13 PHE A 57 138.42 -172.18 REMARK 500 13 PRO A 68 98.46 -59.31 REMARK 500 13 SER A 72 38.11 -81.10 REMARK 500 13 ASN A 87 -152.45 -125.06 REMARK 500 13 ASP A 89 -49.24 -165.52 REMARK 500 13 SER A 90 -31.25 73.62 REMARK 500 13 GLU A 91 111.70 62.50 REMARK 500 14 LEU A 13 95.10 58.44 REMARK 500 14 SER A 15 20.45 -146.11 REMARK 500 14 GLN A 16 -86.75 -78.19 REMARK 500 14 SER A 50 85.00 56.13 REMARK 500 14 GLU A 54 0.11 -163.33 REMARK 500 14 ASP A 63 -162.13 -79.24 REMARK 500 14 SER A 72 49.09 -81.75 REMARK 500 14 GLU A 91 114.45 -169.23 REMARK 500 15 PRO A 12 -166.91 -69.33 REMARK 500 15 SER A 15 -50.66 -165.13 REMARK 500 15 SER A 50 90.74 57.47 REMARK 500 15 PHE A 51 -168.46 -114.76 REMARK 500 15 GLU A 54 0.13 -163.00 REMARK 500 15 PHE A 57 149.99 -176.03 REMARK 500 15 ASP A 63 -155.17 -75.97 REMARK 500 15 PRO A 68 98.88 -57.97 REMARK 500 15 VAL A 71 32.79 -97.18 REMARK 500 15 SER A 72 49.38 -81.04 REMARK 500 15 LYS A 88 83.99 56.43 REMARK 500 15 ASP A 89 84.28 57.18 REMARK 500 15 GLU A 91 109.39 62.98 REMARK 500 16 SER A 15 -105.77 -143.61 REMARK 500 16 GLN A 16 -96.42 53.83 REMARK 500 16 PHE A 32 -125.20 -130.42 REMARK 500 16 PRO A 34 31.64 -77.36 REMARK 500 16 SER A 35 33.53 -162.20 REMARK 500 16 SER A 50 90.04 57.16 REMARK 500 16 GLU A 54 4.93 -165.58 REMARK 500 16 THR A 70 107.55 -49.09 REMARK 500 16 ASN A 87 74.13 57.69 REMARK 500 16 ASP A 89 -25.11 -154.40 REMARK 500 16 GLU A 91 132.03 -177.23 REMARK 500 17 LEU A 13 -177.52 60.24 REMARK 500 17 SER A 15 -40.00 -164.63 REMARK 500 17 SER A 50 94.59 58.38 REMARK 500 17 GLU A 54 -0.23 -160.71 REMARK 500 17 ASP A 63 -167.86 -77.85 REMARK 500 17 PRO A 68 95.30 -60.82 REMARK 500 17 SER A 72 42.81 -162.65 REMARK 500 17 SER A 90 41.80 -173.07 REMARK 500 18 SER A 15 14.74 59.94 REMARK 500 18 GLN A 16 89.50 -153.40 REMARK 500 18 SER A 35 56.38 -118.86 REMARK 500 18 SER A 50 100.79 59.78 REMARK 500 18 PHE A 51 -165.19 -129.90 REMARK 500 18 ASP A 63 -149.88 -75.44 REMARK 500 18 THR A 70 109.22 -56.74 REMARK 500 18 LEU A 86 65.40 -110.28 REMARK 500 18 ASN A 87 -152.62 -136.17 REMARK 500 19 LEU A 13 -159.41 54.82 REMARK 500 19 SER A 15 17.44 -150.40 REMARK 500 19 GLN A 16 90.10 -169.33 REMARK 500 19 ARG A 24 12.82 53.80 REMARK 500 19 SER A 50 86.05 56.76 REMARK 500 19 ASP A 63 -162.52 -75.15 REMARK 500 19 VAL A 71 41.31 -105.59 REMARK 500 19 SER A 72 30.52 -81.34 REMARK 500 19 GLU A 85 38.56 -94.93 REMARK 500 19 LEU A 86 25.46 -157.23 REMARK 500 19 ASN A 87 32.95 -166.34 REMARK 500 19 LYS A 88 79.36 56.11 REMARK 500 19 ASP A 89 72.82 49.92 REMARK 500 20 LEU A 13 84.23 56.08 REMARK 500 20 SER A 15 20.39 -146.94 REMARK 500 20 SER A 35 57.59 -104.23 REMARK 500 20 SER A 50 88.58 57.98 REMARK 500 20 PHE A 51 -168.77 -119.35 REMARK 500 20 GLU A 54 0.14 -163.51 REMARK 500 20 ASP A 63 -160.69 -70.55 REMARK 500 20 PRO A 68 97.04 -55.46 REMARK 500 20 ASN A 87 137.42 -171.78 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q1O RELATED DB: PDB REMARK 900 THE SAME DOMAIN FAMILY REMARK 900 RELATED ID: 1IP9 RELATED DB: PDB REMARK 900 THE SAME DOMAIN FAMILY REMARK 900 RELATED ID: 1IPG RELATED DB: PDB REMARK 900 THE SAME DOMAIN FAMILY REMARK 900 RELATED ID: 1OEY RELATED DB: PDB REMARK 900 THE SAME DOMAIN FAMILY
DBREF 1VD2 A 16 99 UNP P41743 KPCI_HUMAN 16 99
SEQADV 1VD2 GLY A 11 UNP P41743 CLONING ARTIFACT SEQADV 1VD2 PRO A 12 UNP P41743 CLONING ARTIFACT SEQADV 1VD2 LEU A 13 UNP P41743 CLONING ARTIFACT SEQADV 1VD2 GLY A 14 UNP P41743 CLONING ARTIFACT SEQADV 1VD2 SER A 15 UNP P41743 CLONING ARTIFACT
SEQRES 1 A 89 GLY PRO LEU GLY SER GLN VAL ARG VAL LYS ALA TYR TYR SEQRES 2 A 89 ARG GLY ASP ILE MET ILE THR HIS PHE GLU PRO SER ILE SEQRES 3 A 89 SER PHE GLU GLY LEU CYS ASN GLU VAL ARG ASP MET CYS SEQRES 4 A 89 SER PHE ASP ASN GLU GLN LEU PHE THR MET LYS TRP ILE SEQRES 5 A 89 ASP GLU GLU GLY ASP PRO CYS THR VAL SER SER GLN LEU SEQRES 6 A 89 GLU LEU GLU GLU ALA PHE ARG LEU TYR GLU LEU ASN LYS SEQRES 7 A 89 ASP SER GLU LEU LEU ILE HIS VAL PHE PRO CYS
HELIX 1 1 SER A 37 SER A 50 1 14 HELIX 2 2 SER A 73 ASN A 87 1 15
SHEET 1 A 5 ILE A 27 PHE A 32 0 SHEET 2 A 5 VAL A 17 TYR A 22 -1 N VAL A 19 O THR A 30 SHEET 3 A 5 LEU A 92 PRO A 98 1 O ILE A 94 N LYS A 20 SHEET 4 A 5 PHE A 57 TRP A 61 -1 N THR A 58 O PHE A 97 SHEET 5 A 5 CYS A 69 THR A 70 -1 O CYS A 69 N TRP A 61
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000