10 20 30 40 50 60 70 80 1VCS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 10-MAR-04 1VCS
TITLE SOLUTION STRUCTURE OF RSGI RUH-009, AN N-TERMINAL DOMAIN OF TITLE 2 VTI1A [MUS MUSCULUS]
COMPND MOL_ID: 1; COMPND 2 MOLECULE: VESICLE TRANSPORT THROUGH INTERACTION WITH T- COMPND 3 SNARES HOMOLOG 1A; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 6-94); COMPND 6 SYNONYM: VESICLE TRANSPORT V-SNARE PROTEIN VTI1-LIKE 2, COMPND 7 VTI1-RP2; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MUS MUSCULUS ADULT MALE LUNG CDNA, RIKEN FULL-LENGTH SOURCE 6 ENRICHED LIBRARY, CLONE:1200014A22 PRODUCT: VTI1A (AMINO SOURCE 7 ACID 6-94); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P030825-55; SOURCE 10 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS SYSTEM
KEYWDS SNARE, HABC DOMAIN, VTI1, UP AND DOWN THREE HELIX BUNDLE, KEYWDS 2 LEFT-HANDED TWIST, VESICLE TRANSPORT, MEMBRANE FUSION, KEYWDS 3 STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.ABE,H.HIROTA,T.TOMIZAWA,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1VCS 1 VERSN REVDAT 1 03-MAY-05 1VCS 0
JRNL AUTH T.ABE,H.HIROTA,T.TOMIZAWA,S.KOSHIBA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-009, AN N-TERMINAL JRNL TITL 2 DOMAIN OF VTI1A [MUS MUSCULUS] JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1VCS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB006470.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM RSGI RUH-009 U-15N, REMARK 210 13C; 20MM D-TRIS-HCL BUFFER; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.893 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYANAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 89.27 -179.45 REMARK 500 1 TYR A 10 -63.06 -126.17 REMARK 500 1 ARG A 69 -29.45 -39.37 REMARK 500 1 MET A 71 -59.07 69.29 REMARK 500 1 THR A 88 -62.19 -98.93 REMARK 500 1 SER A 97 58.53 -108.16 REMARK 500 1 SER A 100 87.30 47.72 REMARK 500 2 SER A 6 -71.80 -89.55 REMARK 500 2 GLN A 67 -39.94 -173.29 REMARK 500 2 ARG A 69 -83.65 -61.61 REMARK 500 2 TYR A 72 -37.33 -38.13 REMARK 500 2 MET A 83 -71.26 -41.91 REMARK 500 3 SER A 6 -60.27 -157.36 REMARK 500 3 TYR A 10 -67.10 -135.89 REMARK 500 3 LEU A 17 -73.32 -56.55 REMARK 500 3 GLU A 55 -76.15 -56.22 REMARK 500 3 GLN A 67 -41.90 -166.50 REMARK 500 3 ARG A 69 -81.71 -49.43 REMARK 500 3 TYR A 72 -33.06 -36.29 REMARK 500 3 SER A 97 -50.60 -174.50 REMARK 500 4 SER A 2 90.24 42.46 REMARK 500 4 ARG A 69 -28.92 -39.64 REMARK 500 4 MET A 71 -66.34 64.14 REMARK 500 4 SER A 97 78.33 178.55 REMARK 500 4 SER A 101 87.49 58.62 REMARK 500 5 ARG A 69 42.83 -90.12 REMARK 500 5 MET A 83 -71.15 -38.07 REMARK 500 5 ALA A 96 -169.65 44.88 REMARK 500 5 SER A 97 -77.95 63.72 REMARK 500 5 SER A 100 114.71 -39.35 REMARK 500 5 SER A 101 -66.34 70.20 REMARK 500 6 SER A 2 133.81 -178.41 REMARK 500 6 SER A 3 169.45 66.44 REMARK 500 6 TYR A 10 -63.85 -136.84 REMARK 500 6 LEU A 17 -70.48 -55.47 REMARK 500 6 SER A 97 -51.72 -150.64 REMARK 500 7 SER A 2 87.91 -163.93 REMARK 500 7 GLU A 8 53.68 -152.33 REMARK 500 7 ARG A 69 -175.88 -62.45 REMARK 500 7 ILE A 95 46.49 -90.05 REMARK 500 8 SER A 2 93.35 46.05 REMARK 500 8 GLU A 8 142.51 62.69 REMARK 500 8 TYR A 10 -61.66 -125.69 REMARK 500 8 LEU A 17 -72.79 -49.19 REMARK 500 8 THR A 18 -37.42 -38.95 REMARK 500 8 ARG A 69 -36.98 -38.02 REMARK 500 8 MET A 71 -53.83 81.26 REMARK 500 8 ALA A 96 56.78 38.65 REMARK 500 8 SER A 101 113.76 61.35 REMARK 500 9 SER A 3 -61.11 -102.34 REMARK 500 9 SER A 5 149.01 -179.14 REMARK 500 9 TYR A 10 -61.57 -103.56 REMARK 500 9 SER A 100 100.78 164.51 REMARK 500 10 SER A 2 -58.63 -145.52 REMARK 500 10 SER A 5 -70.10 -141.21 REMARK 500 10 SER A 6 87.11 75.08 REMARK 500 10 THR A 88 -62.52 -91.10 REMARK 500 10 SER A 101 77.39 51.54 REMARK 500 11 SER A 2 -58.26 -131.61 REMARK 500 11 SER A 5 -61.48 -143.93 REMARK 500 11 ARG A 30 31.89 -95.04 REMARK 500 11 ALA A 96 78.15 -104.01 REMARK 500 12 SER A 3 126.42 -172.91 REMARK 500 12 SER A 5 90.63 41.17 REMARK 500 12 TYR A 10 -60.55 -103.72 REMARK 500 12 LEU A 17 -72.73 -62.41 REMARK 500 12 THR A 18 -38.41 -38.56 REMARK 500 12 GLN A 46 -33.99 -38.68 REMARK 500 12 ARG A 69 -78.48 -37.23 REMARK 500 12 MET A 83 -70.71 -42.87 REMARK 500 13 GLN A 46 -35.68 -38.91 REMARK 500 13 ARG A 69 45.34 -85.57 REMARK 500 13 MET A 71 -54.53 78.98 REMARK 500 13 TYR A 72 -31.59 -37.85 REMARK 500 13 SER A 78 -60.59 -91.70 REMARK 500 13 ILE A 95 46.66 -86.75 REMARK 500 13 SER A 97 82.56 71.01 REMARK 500 13 SER A 101 168.84 67.93 REMARK 500 14 SER A 2 153.64 63.74 REMARK 500 14 TYR A 10 -66.81 -106.16 REMARK 500 14 MET A 71 -64.19 -92.15 REMARK 500 14 ALA A 96 48.38 39.80 REMARK 500 14 SER A 100 -57.13 -149.32 REMARK 500 15 ARG A 69 -32.37 -37.31 REMARK 500 15 MET A 71 -52.16 80.61 REMARK 500 15 MET A 76 -34.88 -39.55 REMARK 500 15 SER A 97 62.51 -150.97 REMARK 500 15 SER A 100 99.46 178.17 REMARK 500 15 SER A 101 -66.95 69.42 REMARK 500 16 LEU A 17 -77.37 -47.73 REMARK 500 16 GLU A 55 -70.51 -63.19 REMARK 500 16 SER A 101 -57.81 -172.36 REMARK 500 17 SER A 2 -58.65 -169.91 REMARK 500 17 SER A 5 -59.22 -120.49 REMARK 500 17 TYR A 10 -67.10 -123.71 REMARK 500 17 MET A 71 -60.22 68.10 REMARK 500 17 TYR A 79 -37.50 -38.50 REMARK 500 17 SER A 100 -60.89 -162.33 REMARK 500 17 SER A 101 100.41 -178.23 REMARK 500 18 SER A 5 114.14 61.13 REMARK 500 18 SER A 6 148.15 178.44 REMARK 500 18 GLU A 8 154.81 62.99 REMARK 500 18 TYR A 10 -59.72 -120.07 REMARK 500 18 THR A 18 -70.33 -39.15 REMARK 500 18 GLN A 46 -38.81 -38.81 REMARK 500 18 ARG A 69 86.29 -57.40 REMARK 500 18 THR A 88 -69.07 -93.20 REMARK 500 18 ALA A 96 82.24 39.23 REMARK 500 18 SER A 100 129.71 63.07 REMARK 500 18 SER A 101 -59.31 74.34 REMARK 500 19 SER A 2 -58.14 177.85 REMARK 500 19 GLN A 67 -41.90 -167.58 REMARK 500 19 ARG A 69 -76.72 -54.86 REMARK 500 19 ARG A 75 -34.71 -39.19 REMARK 500 19 SER A 97 -46.45 -141.34 REMARK 500 19 SER A 101 -92.33 52.23 REMARK 500 20 SER A 2 119.67 71.80 REMARK 500 20 SER A 3 -72.97 -102.05 REMARK 500 20 ARG A 69 41.47 -99.63 REMARK 500 20 TYR A 72 -35.02 -35.20 REMARK 500 20 SER A 97 -54.64 -152.81 REMARK 500 20 SER A 101 -59.75 178.43 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007006799 RELATED DB: TARGETDB
DBREF 1VCS A 8 96 UNP O89116 VTI1A_MOUSE 6 94
SEQADV 1VCS GLY A 1 UNP O89116 CLONING ARTIFACT SEQADV 1VCS SER A 2 UNP O89116 CLONING ARTIFACT SEQADV 1VCS SER A 3 UNP O89116 CLONING ARTIFACT SEQADV 1VCS GLY A 4 UNP O89116 CLONING ARTIFACT SEQADV 1VCS SER A 5 UNP O89116 CLONING ARTIFACT SEQADV 1VCS SER A 6 UNP O89116 CLONING ARTIFACT SEQADV 1VCS GLY A 7 UNP O89116 CLONING ARTIFACT SEQADV 1VCS SER A 97 UNP O89116 CLONING ARTIFACT SEQADV 1VCS GLY A 98 UNP O89116 CLONING ARTIFACT SEQADV 1VCS PRO A 99 UNP O89116 CLONING ARTIFACT SEQADV 1VCS SER A 100 UNP O89116 CLONING ARTIFACT SEQADV 1VCS SER A 101 UNP O89116 CLONING ARTIFACT SEQADV 1VCS GLY A 102 UNP O89116 CLONING ARTIFACT
SEQRES 1 A 102 GLY SER SER GLY SER SER GLY GLU GLY TYR GLU GLN ASP SEQRES 2 A 102 PHE ALA VAL LEU THR ALA GLU ILE THR SER LYS ILE ALA SEQRES 3 A 102 ARG VAL PRO ARG LEU PRO PRO ASP GLU LYS LYS GLN MET SEQRES 4 A 102 VAL ALA ASN VAL GLU LYS GLN LEU GLU GLU ALA ARG GLU SEQRES 5 A 102 LEU LEU GLU GLN MET ASP LEU GLU VAL ARG GLU ILE PRO SEQRES 6 A 102 PRO GLN SER ARG GLY MET TYR SER ASN ARG MET ARG SER SEQRES 7 A 102 TYR LYS GLN GLU MET GLY LYS LEU GLU THR ASP PHE LYS SEQRES 8 A 102 ARG SER ARG ILE ALA SER GLY PRO SER SER GLY
HELIX 1 1 GLU A 11 ARG A 27 1 17 HELIX 2 2 PRO A 29 ARG A 30 5 2 HELIX 3 3 GLU A 35 VAL A 61 1 27 HELIX 4 4 MET A 71 ILE A 95 1 25
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000