10 20 30 40 50 60 70 80 1V79 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 14-DEC-03 1V79
TITLE CRYSTAL STRUCTURES OF ADENOSINE DEAMINASE COMPLEXED WITH TITLE 2 POTENT INHIBITORS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE DEAMINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADENOSINE AMINOHYDROLASE; COMPND 5 EC: 3.5.4.4
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913
KEYWDS BETA BARREL, ZINC, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR T.KINOSHITA
REVDAT 2 24-FEB-09 1V79 1 VERSN REVDAT 1 21-DEC-04 1V79 0
JRNL AUTH T.TERASAKA,H.OKUMURA,K.TSUJI,T.KATO,I.NAKANISHI, JRNL AUTH 2 T.KINOSHITA,Y.KATO,M.KUNO,N.SEKI,Y.NAOE,T.INOUE, JRNL AUTH 3 K.TANAKA,K.NAKAMURA JRNL TITL STRUCTURE-BASED DESIGN AND SYNTHESIS OF JRNL TITL 2 NON-NUCLEOSIDE, POTENT, AND ORALLY BIOAVAILABLE JRNL TITL 3 ADENOSINE DEAMINASE INHIBITORS JRNL REF J.MED.CHEM. V. 47 2728 2004 JRNL REFN ISSN 0022-2623 JRNL PMID 15139750 JRNL DOI 10.1021/JM0499559
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 701 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 14651 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2789 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1V79 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-DEC-03. REMARK 100 THE RCSB ID CODE IS RCSB006294.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL24XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8266 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : GRAPHITE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13950 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 12.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, PEG400, MES REMARK 280 BUFFER, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.55000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.61500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.32500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.61500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.77500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.61500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.61500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.32500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.61500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.61500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.77500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.55000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 MET A 353 REMARK 465 PRO A 354 REMARK 465 SER A 355 REMARK 465 PRO A 356 REMARK 465 ALA A 357
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA LYS A 225 O HOH A 1122 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 60 CB ASP A 60 CG 0.132 REMARK 500 VAL A 100 CB VAL A 100 CG1 -0.234 REMARK 500 GLU A 113 CG GLU A 113 CD 0.109 REMARK 500 ARG A 142 CA ARG A 142 CB -0.146 REMARK 500 GLU A 167 CD GLU A 167 OE1 -0.070 REMARK 500 GLU A 174 CB GLU A 174 CG 0.124 REMARK 500 HIS A 214 NE2 HIS A 214 CD2 -0.069 REMARK 500 HIS A 241 NE2 HIS A 241 CD2 -0.077 REMARK 500 ARG A 253 NE ARG A 253 CZ 0.088 REMARK 500 TYR A 267 CZ TYR A 267 CE2 0.083 REMARK 500 GLU A 277 CB GLU A 277 CG 0.127 REMARK 500 GLU A 277 CG GLU A 277 CD 0.153 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 28 CB - CA - C ANGL. DEV. = -11.7 DEGREES REMARK 500 TYR A 29 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 TYR A 30 CB - CG - CD1 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 33 CD - NE - CZ ANGL. DEV. = -12.1 DEGREES REMARK 500 GLU A 44 CB - CA - C ANGL. DEV. = -19.1 DEGREES REMARK 500 MET A 52 N - CA - CB ANGL. DEV. = -12.6 DEGREES REMARK 500 MET A 52 C - N - CA ANGL. DEV. = -15.7 DEGREES REMARK 500 ASP A 60 CA - CB - CG ANGL. DEV. = 25.2 DEGREES REMARK 500 ASP A 60 CB - CG - OD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 TYR A 68 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ALA A 71 C - N - CA ANGL. DEV. = -17.6 DEGREES REMARK 500 ASP A 77 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 81 CD - NE - CZ ANGL. DEV. = -10.5 DEGREES REMARK 500 TYR A 84 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 MET A 89 CA - CB - CG ANGL. DEV. = 12.4 DEGREES REMARK 500 VAL A 95 N - CA - CB ANGL. DEV. = -13.2 DEGREES REMARK 500 VAL A 95 CA - CB - CG1 ANGL. DEV. = 10.3 DEGREES REMARK 500 VAL A 95 CA - CB - CG2 ANGL. DEV. = -13.9 DEGREES REMARK 500 TYR A 97 CB - CG - CD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 101 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 TYR A 102 CB - CG - CD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 PRO A 114 N - CA - CB ANGL. DEV. = -8.0 DEGREES REMARK 500 GLN A 119 C - N - CA ANGL. DEV. = -15.6 DEGREES REMARK 500 ALA A 120 C - N - CA ANGL. DEV. = -16.8 DEGREES REMARK 500 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 VAL A 166 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 VAL A 166 CG1 - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 LYS A 170 CD - CE - NZ ANGL. DEV. = -14.0 DEGREES REMARK 500 GLU A 174 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 PHE A 194 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 GLN A 199 CB - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 VAL A 223 CA - CB - CG2 ANGL. DEV. = 11.9 DEGREES REMARK 500 VAL A 224 CG1 - CB - CG2 ANGL. DEV. = 12.4 DEGREES REMARK 500 LYS A 225 C - N - CA ANGL. DEV. = -15.6 DEGREES REMARK 500 THR A 233 CB - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 ARG A 235 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 235 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 251 NE - CZ - NH1 ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG A 251 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 253 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG A 253 CD - NE - CZ ANGL. DEV. = -10.7 DEGREES REMARK 500 GLN A 254 CB - CG - CD ANGL. DEV. = -17.3 DEGREES REMARK 500 TYR A 267 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 GLY A 270 C - N - CA ANGL. DEV. = -13.6 DEGREES REMARK 500 THR A 276 N - CA - CB ANGL. DEV. = -15.2 DEGREES REMARK 500 GLU A 277 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 PHE A 283 CB - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 63 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 8 49.47 -82.93 REMARK 500 PRO A 39 41.46 -86.21 REMARK 500 ALA A 40 165.80 172.41 REMARK 500 PRO A 43 98.40 -52.49 REMARK 500 GLU A 44 -53.05 148.86 REMARK 500 ILE A 50 39.37 -76.38 REMARK 500 PRO A 55 170.42 -50.42 REMARK 500 LEU A 56 146.90 178.59 REMARK 500 PRO A 70 -7.83 -59.67 REMARK 500 CYS A 75 85.40 -68.26 REMARK 500 GLU A 121 138.26 -28.54 REMARK 500 ARG A 156 -49.49 -29.56 REMARK 500 GLN A 158 62.35 -153.93 REMARK 500 GLU A 174 -30.74 36.83 REMARK 500 GLU A 186 -5.87 -50.35 REMARK 500 VAL A 218 -50.14 -140.82 REMARK 500 HIS A 238 -90.17 61.03 REMARK 500 CYS A 262 75.64 -117.30 REMARK 500 SER A 265 -48.61 -22.02 REMARK 500 GLU A 277 98.36 -51.96 REMARK 500 ALA A 279 -35.06 -39.52 REMARK 500 ASP A 295 -64.70 68.71 REMARK 500 ASP A 296 87.15 -157.85 REMARK 500 LYS A 312 -70.88 -59.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 55 LEU A 56 -145.41 REMARK 500 CYS A 153 CYS A 154 147.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 29 0.14 SIDE_CHAIN REMARK 500 ARG A 33 0.11 SIDE_CHAIN REMARK 500 TYR A 67 0.18 SIDE_CHAIN REMARK 500 TYR A 68 0.07 SIDE_CHAIN REMARK 500 ARG A 81 0.26 SIDE_CHAIN REMARK 500 TYR A 102 0.08 SIDE_CHAIN REMARK 500 ARG A 149 0.25 SIDE_CHAIN REMARK 500 ARG A 156 0.12 SIDE_CHAIN REMARK 500 ARG A 211 0.09 SIDE_CHAIN REMARK 500 TYR A 249 0.09 SIDE_CHAIN REMARK 500 ARG A 251 0.10 SIDE_CHAIN REMARK 500 ARG A 253 0.16 SIDE_CHAIN REMARK 500 TYR A 267 0.30 SIDE_CHAIN REMARK 500 PHE A 283 0.07 SIDE_CHAIN REMARK 500 ARG A 324 0.16 SIDE_CHAIN REMARK 500 TYR A 351 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1104 DISTANCE = 6.35 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 17 NE2 REMARK 620 2 HIS A 214 NE2 97.3 REMARK 620 3 HIS A 15 NE2 121.8 91.0 REMARK 620 4 ASP A 295 OD2 92.6 169.9 82.1 REMARK 620 5 HOH A1147 O 135.1 99.1 99.4 75.0 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FR7 A 1001
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1V78 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH FR233623 REMARK 900 RELATED ID: 1V7A RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH FR247581
DBREF 1V79 A 2 357 UNP P56658 ADA_BOVIN 1 356
SEQADV 1V79 ASP A 8 UNP P56658 ASN 7 SEE REMARK 999 SEQADV 1V79 LYS A 32 UNP P56658 ARG 31 SEE REMARK 999 SEQADV 1V79 ARG A 33 UNP P56658 LYS 32 SEE REMARK 999 SEQADV 1V79 THR A 57 UNP P56658 SER 56 SEE REMARK 999 SEQADV 1V79 ASP A 60 UNP P56658 GLU 59 SEE REMARK 999 SEQADV 1V79 ASP A 77 UNP P56658 GLU 76 SEE REMARK 999 SEQADV 1V79 ILE A 79 UNP P56658 VAL 78 SEE REMARK 999 SEQADV 1V79 GLN A 199 UNP P56658 LYS 198 SEE REMARK 999 SEQADV 1V79 THR A 246 UNP P56658 ALA 245 SEE REMARK 999 SEQADV 1V79 ILE A 261 UNP P56658 VAL 260 SEE REMARK 999 SEQADV 1V79 ALA A 279 UNP P56658 PRO 278 SEE REMARK 999 SEQADV 1V79 ILE A 281 UNP P56658 VAL 280 SEE REMARK 999 SEQADV 1V79 LYS A 313 UNP P56658 ASN 312 SEE REMARK 999 SEQADV 1V79 ASP A 314 UNP P56658 GLU 313 SEE REMARK 999 SEQADV 1V79 ARG A 352 UNP P56658 GLY 351 SEE REMARK 999
SEQRES 1 A 356 ALA GLN THR PRO ALA PHE ASP LYS PRO LYS VAL GLU LEU SEQRES 2 A 356 HIS VAL HIS LEU ASP GLY ALA ILE LYS PRO GLU THR ILE SEQRES 3 A 356 LEU TYR TYR GLY LYS ARG ARG GLY ILE ALA LEU PRO ALA SEQRES 4 A 356 ASP THR PRO GLU GLU LEU GLN ASN ILE ILE GLY MET ASP SEQRES 5 A 356 LYS PRO LEU THR LEU PRO ASP PHE LEU ALA LYS PHE ASP SEQRES 6 A 356 TYR TYR MET PRO ALA ILE ALA GLY CYS ARG ASP ALA ILE SEQRES 7 A 356 LYS ARG ILE ALA TYR GLU PHE VAL GLU MET LYS ALA LYS SEQRES 8 A 356 ASP GLY VAL VAL TYR VAL GLU VAL ARG TYR SER PRO HIS SEQRES 9 A 356 LEU LEU ALA ASN SER LYS VAL GLU PRO ILE PRO TRP ASN SEQRES 10 A 356 GLN ALA GLU GLY ASP LEU THR PRO ASP GLU VAL VAL SER SEQRES 11 A 356 LEU VAL ASN GLN GLY LEU GLN GLU GLY GLU ARG ASP PHE SEQRES 12 A 356 GLY VAL LYS VAL ARG SER ILE LEU CYS CYS MET ARG HIS SEQRES 13 A 356 GLN PRO SER TRP SER SER GLU VAL VAL GLU LEU CYS LYS SEQRES 14 A 356 LYS TYR ARG GLU GLN THR VAL VAL ALA ILE ASP LEU ALA SEQRES 15 A 356 GLY ASP GLU THR ILE GLU GLY SER SER LEU PHE PRO GLY SEQRES 16 A 356 HIS VAL GLN ALA TYR ALA GLU ALA VAL LYS SER GLY VAL SEQRES 17 A 356 HIS ARG THR VAL HIS ALA GLY GLU VAL GLY SER ALA ASN SEQRES 18 A 356 VAL VAL LYS GLU ALA VAL ASP THR LEU LYS THR GLU ARG SEQRES 19 A 356 LEU GLY HIS GLY TYR HIS THR LEU GLU ASP THR THR LEU SEQRES 20 A 356 TYR ASN ARG LEU ARG GLN GLU ASN MET HIS PHE GLU ILE SEQRES 21 A 356 CYS PRO TRP SER SER TYR LEU THR GLY ALA TRP LYS PRO SEQRES 22 A 356 ASP THR GLU HIS ALA VAL ILE ARG PHE LYS ASN ASP GLN SEQRES 23 A 356 VAL ASN TYR SER LEU ASN THR ASP ASP PRO LEU ILE PHE SEQRES 24 A 356 LYS SER THR LEU ASP THR ASP TYR GLN MET THR LYS LYS SEQRES 25 A 356 ASP MET GLY PHE THR GLU GLU GLU PHE LYS ARG LEU ASN SEQRES 26 A 356 ILE ASN ALA ALA LYS SER SER PHE LEU PRO GLU ASP GLU SEQRES 27 A 356 LYS LYS GLU LEU LEU ASP LEU LEU TYR LYS ALA TYR ARG SEQRES 28 A 356 MET PRO SER PRO ALA
HET ZN A 400 1 HET FR7 A1001 22
HETNAM ZN ZINC ION HETNAM FR7 1-{(1R,2S)-1-[2-(2,3,-DICHLOROPHENYL)ETHYL]-2- HETNAM 2 FR7 HYDROXYPROPYL}-1H-IMIDAZOLE-4-CARBOXAMIDE
HETSYN FR7 FR239087
FORMUL 2 ZN ZN 2+ FORMUL 3 FR7 C15 H17 CL2 N3 O2 FORMUL 4 HOH *146(H2 O)
HELIX 1 1 ASP A 19 ALA A 21 5 3 HELIX 2 2 LYS A 23 ARG A 34 1 12 HELIX 3 3 GLU A 44 ILE A 50 1 7 HELIX 4 4 THR A 57 MET A 69 1 13 HELIX 5 5 PRO A 70 ILE A 72 5 3 HELIX 6 6 CYS A 75 ASP A 93 1 19 HELIX 7 7 SER A 103 ALA A 108 1 6 HELIX 8 8 THR A 125 GLY A 145 1 21 HELIX 9 9 TRP A 161 TYR A 172 1 12 HELIX 10 10 GLY A 190 LEU A 193 5 4 HELIX 11 11 PHE A 194 SER A 207 1 14 HELIX 12 12 SER A 220 THR A 230 1 11 HELIX 13 13 TYR A 240 GLU A 244 5 5 HELIX 14 14 ASP A 245 GLU A 255 1 11 HELIX 15 15 CYS A 262 GLY A 270 1 9 HELIX 16 16 HIS A 278 ASP A 286 1 9 HELIX 17 17 ASP A 296 LYS A 301 1 6 HELIX 18 18 THR A 303 GLY A 316 1 14 HELIX 19 19 THR A 318 SER A 332 1 15 HELIX 20 20 PRO A 336 TYR A 351 1 16
SHEET 1 A 8 LYS A 11 HIS A 17 0 SHEET 2 A 8 VAL A 95 TYR A 102 1 O TYR A 97 N GLU A 13 SHEET 3 A 8 LYS A 147 MET A 155 1 O ARG A 149 N VAL A 100 SHEET 4 A 8 VAL A 177 ALA A 183 1 O ASP A 181 N CYS A 154 SHEET 5 A 8 HIS A 210 ALA A 215 1 O THR A 212 N ILE A 180 SHEET 6 A 8 ARG A 235 HIS A 238 1 O GLY A 237 N ALA A 215 SHEET 7 A 8 HIS A 258 ILE A 261 1 O HIS A 258 N LEU A 236 SHEET 8 A 8 TYR A 290 LEU A 292 1 O SER A 291 N PHE A 259
LINK ZN ZN A 400 NE2 HIS A 17 1555 1555 2.02 LINK ZN ZN A 400 NE2 HIS A 214 1555 1555 2.37 LINK ZN ZN A 400 NE2 HIS A 15 1555 1555 2.07 LINK ZN ZN A 400 OD2 ASP A 295 1555 1555 2.41 LINK ZN ZN A 400 O HOH A1147 1555 1555 1.87
CISPEP 1 GLU A 113 PRO A 114 0 -3.00 CISPEP 2 GLN A 175 THR A 176 0 -4.32
SITE 1 AC1 5 HIS A 15 HIS A 17 HIS A 214 ASP A 295 SITE 2 AC1 5 HOH A1147 SITE 1 AC2 15 HIS A 17 ASP A 19 LEU A 62 PHE A 65 SITE 2 AC2 15 TYR A 102 SER A 103 LEU A 106 TRP A 117 SITE 3 AC2 15 ALA A 183 ASP A 185 ASP A 296 HOH A1002 SITE 4 AC2 15 HOH A1011 HOH A1097 HOH A1099
CRYST1 77.230 77.230 135.100 90.00 90.00 90.00 P 43 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012948 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012948 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007402 0.00000