10 20 30 40 50 60 70 80 1V6G - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 29-NOV-03 1V6G
TITLE SOLUTION STRUCTURE OF THE LIM DOMAIN OF THE HUMAN ACTIN TITLE 2 BINDING LIM PROTEIN 2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN BINDING LIM PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIM DOMAIN; COMPND 5 SYNONYM: KIAA1808 PROTEIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA FK00917; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P020930-36; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS LIM DOMAIN, ZINC BINDING DOMAIN, ACTIN BINDING LIM PROTEIN KEYWDS 2 2, ABLIM2, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.MIYAMOTO,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1V6G 1 VERSN REVDAT 1 01-JUN-04 1V6G 0
JRNL AUTH K.MIYAMOTO,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE LIM DOMAIN OF THE HUMAN JRNL TITL 2 ACTIN BINDING LIM PROTEIN 2 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1V6G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-03. REMARK 100 THE RCSB ID CODE IS RCSB006265.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.22MM LIM DOMAIN U-13C,15N; REMARK 210 20MM D-TRIS-HCL(PH 7.5); 100MM REMARK 210 NACL; 0.02% NAN3; 0.1MM ZNCL2; REMARK 210 90% H2O,10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.863, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 12 -38.57 -31.22 REMARK 500 1 LEU A 13 159.51 -39.12 REMARK 500 1 SER A 20 -65.60 -123.83 REMARK 500 1 ASP A 22 47.45 72.32 REMARK 500 1 PHE A 42 44.78 -81.94 REMARK 500 1 PRO A 53 4.04 -69.71 REMARK 500 1 ASP A 55 157.70 -38.27 REMARK 500 2 SER A 2 145.01 -35.43 REMARK 500 2 ARG A 12 -35.60 -37.52 REMARK 500 2 LEU A 13 158.18 -38.32 REMARK 500 2 SER A 20 -69.16 -96.83 REMARK 500 2 PHE A 42 41.97 -80.86 REMARK 500 2 CYS A 44 164.76 -42.03 REMARK 500 2 PRO A 53 5.33 -69.80 REMARK 500 2 SER A 74 48.82 -76.03 REMARK 500 2 VAL A 75 44.44 33.10 REMARK 500 3 SER A 6 105.21 -41.26 REMARK 500 3 LEU A 13 162.86 -40.81 REMARK 500 3 SER A 20 -69.84 -100.74 REMARK 500 3 PHE A 42 39.02 -82.33 REMARK 500 3 CYS A 44 165.79 -43.66 REMARK 500 3 VAL A 46 -65.43 -97.27 REMARK 500 3 PRO A 53 0.25 -69.76 REMARK 500 3 ASP A 55 156.36 -38.57 REMARK 500 4 LEU A 8 75.49 -106.48 REMARK 500 4 LEU A 13 157.10 -39.08 REMARK 500 4 PHE A 42 37.29 -82.56 REMARK 500 4 CYS A 44 167.28 -46.53 REMARK 500 4 PRO A 53 88.71 -69.69 REMARK 500 4 GLN A 67 -28.35 -38.18 REMARK 500 5 SER A 6 42.48 -82.93 REMARK 500 5 LEU A 8 54.44 -117.17 REMARK 500 5 LEU A 13 161.64 -40.32 REMARK 500 5 SER A 20 -69.04 -123.89 REMARK 500 5 ASP A 22 51.95 70.83 REMARK 500 5 GLU A 28 148.16 -172.17 REMARK 500 5 PHE A 42 37.58 -83.61 REMARK 500 5 CYS A 44 165.34 -46.51 REMARK 500 5 VAL A 75 137.44 -38.38 REMARK 500 5 SER A 76 138.68 -172.14 REMARK 500 5 PRO A 78 -178.42 -69.78 REMARK 500 5 SER A 79 42.10 -101.20 REMARK 500 6 ARG A 12 -36.70 -31.90 REMARK 500 6 LEU A 13 160.69 -43.75 REMARK 500 6 PHE A 19 32.59 -91.60 REMARK 500 6 SER A 20 -55.41 -131.93 REMARK 500 6 PHE A 42 45.03 -78.45 REMARK 500 6 VAL A 46 -69.41 -91.51 REMARK 500 6 VAL A 75 53.51 25.35 REMARK 500 6 SER A 79 41.09 -87.43 REMARK 500 7 LEU A 8 69.66 -107.14 REMARK 500 7 TYR A 10 -35.01 -33.54 REMARK 500 7 ARG A 12 -32.44 -34.00 REMARK 500 7 LEU A 13 165.37 -41.62 REMARK 500 7 PHE A 42 34.98 -86.32 REMARK 500 7 CYS A 44 166.27 -44.47 REMARK 500 7 VAL A 46 -71.21 -87.38 REMARK 500 7 LEU A 71 154.44 -42.18 REMARK 500 7 SER A 76 -52.55 -122.61 REMARK 500 7 SER A 80 42.71 -96.06 REMARK 500 8 SER A 5 147.55 -170.34 REMARK 500 8 LEU A 13 162.20 -44.52 REMARK 500 8 TYR A 14 -60.85 -29.77 REMARK 500 8 SER A 20 -71.44 -99.65 REMARK 500 8 LEU A 33 47.72 36.20 REMARK 500 8 PHE A 42 46.27 -77.66 REMARK 500 8 CYS A 44 164.40 -42.20 REMARK 500 8 SER A 74 26.61 43.49 REMARK 500 8 SER A 76 42.58 35.64 REMARK 500 9 ARG A 12 -38.40 -31.04 REMARK 500 9 LEU A 13 160.53 -39.77 REMARK 500 9 SER A 20 -67.26 -105.54 REMARK 500 9 PHE A 42 42.99 -80.74 REMARK 500 9 CYS A 44 163.78 -42.86 REMARK 500 9 VAL A 46 -71.28 -92.81 REMARK 500 9 SER A 74 41.67 -92.10 REMARK 500 10 LEU A 8 51.88 35.30 REMARK 500 10 ARG A 12 -38.44 -30.90 REMARK 500 10 LEU A 13 158.02 -39.67 REMARK 500 10 PHE A 42 39.55 -82.19 REMARK 500 10 CYS A 44 165.59 -42.21 REMARK 500 10 VAL A 46 -64.68 -91.11 REMARK 500 10 PRO A 53 4.89 -69.78 REMARK 500 11 ARG A 12 -36.54 -33.78 REMARK 500 11 LEU A 13 156.26 -37.13 REMARK 500 11 SER A 20 -71.77 -99.89 REMARK 500 11 ASP A 22 43.74 72.33 REMARK 500 11 PHE A 42 42.37 -80.01 REMARK 500 11 CYS A 44 162.81 -40.99 REMARK 500 11 PRO A 53 5.03 -69.75 REMARK 500 11 ASP A 55 131.47 -176.36 REMARK 500 11 PRO A 78 1.46 -69.79 REMARK 500 12 SER A 6 -62.37 -96.45 REMARK 500 12 LEU A 8 66.64 -119.92 REMARK 500 12 ARG A 12 -35.08 -38.43 REMARK 500 12 LEU A 13 158.93 -38.87 REMARK 500 12 SER A 20 -70.45 -105.82 REMARK 500 12 PHE A 42 44.88 -78.28 REMARK 500 12 CYS A 44 165.37 -48.49 REMARK 500 12 PRO A 53 84.25 -69.73 REMARK 500 12 LYS A 62 -34.06 -131.62 REMARK 500 12 PRO A 78 17.52 -69.80 REMARK 500 12 SER A 79 48.24 74.68 REMARK 500 13 LEU A 8 55.15 -119.36 REMARK 500 13 LEU A 13 160.90 -41.21 REMARK 500 13 SER A 20 -68.48 -108.55 REMARK 500 13 PHE A 42 34.70 -83.62 REMARK 500 13 CYS A 44 162.56 -44.11 REMARK 500 13 VAL A 46 -72.41 -91.40 REMARK 500 14 ARG A 12 -31.49 -38.88 REMARK 500 14 LEU A 13 163.58 -41.21 REMARK 500 14 PHE A 42 40.47 -81.48 REMARK 500 14 CYS A 44 166.19 -47.14 REMARK 500 14 VAL A 46 -70.18 -84.15 REMARK 500 14 PRO A 53 4.55 -69.72 REMARK 500 14 ASP A 55 171.18 -50.86 REMARK 500 14 PRO A 78 2.72 -69.79 REMARK 500 14 SER A 79 93.00 -43.80 REMARK 500 15 ARG A 12 -35.75 -32.43 REMARK 500 15 LEU A 13 161.92 -40.10 REMARK 500 15 PHE A 19 32.13 -83.90 REMARK 500 15 SER A 20 -58.69 -129.71 REMARK 500 15 ASP A 22 46.89 71.50 REMARK 500 15 PHE A 42 41.54 -79.91 REMARK 500 15 CYS A 44 151.67 -37.20 REMARK 500 15 ASP A 55 133.76 -35.35 REMARK 500 16 ARG A 12 -36.02 -31.58 REMARK 500 16 LEU A 13 161.50 -39.53 REMARK 500 16 SER A 20 -65.79 -106.42 REMARK 500 16 SER A 31 99.23 -68.78 REMARK 500 16 LEU A 33 103.31 -40.26 REMARK 500 16 PHE A 42 39.74 -82.15 REMARK 500 16 VAL A 46 -71.88 -89.77 REMARK 500 16 ASP A 55 165.62 -47.37 REMARK 500 17 SER A 6 35.69 35.93 REMARK 500 17 ARG A 12 -37.50 -31.99 REMARK 500 17 LEU A 13 163.15 -41.00 REMARK 500 17 SER A 20 -67.35 -120.85 REMARK 500 17 PHE A 42 39.43 -82.24 REMARK 500 17 CYS A 44 164.69 -41.68 REMARK 500 17 VAL A 46 -68.89 -93.48 REMARK 500 17 PRO A 53 2.49 -69.78 REMARK 500 17 PRO A 78 3.13 -69.73 REMARK 500 17 SER A 79 106.89 -33.35 REMARK 500 18 ARG A 12 -40.05 -29.58 REMARK 500 18 LEU A 13 157.78 -37.70 REMARK 500 18 SER A 20 -57.54 -127.66 REMARK 500 18 GLU A 26 -70.20 -80.85 REMARK 500 18 GLU A 28 125.28 -30.31 REMARK 500 18 LEU A 33 45.80 36.61 REMARK 500 18 PRO A 39 1.97 -69.76 REMARK 500 18 PHE A 42 34.58 -83.73 REMARK 500 18 PRO A 53 2.15 -69.70 REMARK 500 19 SER A 2 99.79 -47.91 REMARK 500 19 SER A 6 79.92 -67.62 REMARK 500 19 ARG A 12 -39.89 -31.07 REMARK 500 19 LEU A 13 159.43 -39.04 REMARK 500 19 SER A 20 -58.45 -125.11 REMARK 500 19 PHE A 42 42.58 -79.60 REMARK 500 19 VAL A 46 -59.70 -125.26 REMARK 500 19 PRO A 53 13.26 -69.85 REMARK 500 19 SER A 74 44.90 -81.36 REMARK 500 19 SER A 80 41.96 -93.32 REMARK 500 20 SER A 5 119.25 -161.01 REMARK 500 20 ARG A 12 -31.86 -38.12 REMARK 500 20 LEU A 13 163.76 -42.91 REMARK 500 20 SER A 20 -70.33 -97.41 REMARK 500 20 PHE A 42 42.79 -80.10 REMARK 500 20 CYS A 44 164.92 -49.62 REMARK 500 20 PRO A 53 94.87 -69.77 REMARK 500 20 LYS A 68 -70.49 -64.18 REMARK 500 20 SER A 70 -72.03 -37.26 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 CYS A 21 SG 115.6 REMARK 620 3 HIS A 38 ND1 89.3 90.2 REMARK 620 4 CYS A 41 SG 117.9 119.1 116.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 44 SG REMARK 620 2 CYS A 47 SG 108.3 REMARK 620 3 CYS A 66 SG 116.5 104.3 REMARK 620 4 CYS A 69 SG 112.6 114.1 100.8 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001776.2 RELATED DB: TARGETDB
DBREF 1V6G A 8 75 UNP Q6H8Q1 ABLM2_HUMAN 40 107
SEQADV 1V6G GLY A 1 UNP Q6H8Q1 CLONING ARTIFACT SEQADV 1V6G SER A 2 UNP Q6H8Q1 CLONING ARTIFACT SEQADV 1V6G SER A 3 UNP Q6H8Q1 CLONING ARTIFACT SEQADV 1V6G GLY A 4 UNP Q6H8Q1 CLONING ARTIFACT SEQADV 1V6G SER A 5 UNP Q6H8Q1 CLONING ARTIFACT SEQADV 1V6G SER A 6 UNP Q6H8Q1 CLONING ARTIFACT SEQADV 1V6G GLY A 7 UNP Q6H8Q1 CLONING ARTIFACT SEQADV 1V6G SER A 76 UNP Q6H8Q1 CLONING ARTIFACT SEQADV 1V6G GLY A 77 UNP Q6H8Q1 CLONING ARTIFACT SEQADV 1V6G PRO A 78 UNP Q6H8Q1 CLONING ARTIFACT SEQADV 1V6G SER A 79 UNP Q6H8Q1 CLONING ARTIFACT SEQADV 1V6G SER A 80 UNP Q6H8Q1 CLONING ARTIFACT SEQADV 1V6G GLY A 81 UNP Q6H8Q1 CLONING ARTIFACT
SEQRES 1 A 81 GLY SER SER GLY SER SER GLY LEU ASP TYR GLN ARG LEU SEQRES 2 A 81 TYR GLY THR ARG CYS PHE SER CYS ASP GLN PHE ILE GLU SEQRES 3 A 81 GLY GLU VAL VAL SER ALA LEU GLY LYS THR TYR HIS PRO SEQRES 4 A 81 ASP CYS PHE VAL CYS ALA VAL CYS ARG LEU PRO PHE PRO SEQRES 5 A 81 PRO GLY ASP ARG VAL THR PHE ASN GLY LYS GLU CYS MET SEQRES 6 A 81 CYS GLN LYS CYS SER LEU PRO VAL SER VAL SER GLY PRO SEQRES 7 A 81 SER SER GLY
HET ZN A 201 1 HET ZN A 401 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 TYR A 10 ARG A 12 5 3 HELIX 2 2 GLN A 67 SER A 70 1 4
SHEET 1 A 2 VAL A 30 ALA A 32 0 SHEET 2 A 2 LYS A 35 TYR A 37 -1 O TYR A 37 N VAL A 30 SHEET 1 B 2 VAL A 57 ASN A 60 0 SHEET 2 B 2 GLU A 63 CYS A 66 -1 O MET A 65 N THR A 58
LINK ZN ZN A 201 SG CYS A 18 1555 1555 2.35 LINK ZN ZN A 201 SG CYS A 21 1555 1555 2.32 LINK ZN ZN A 201 ND1 HIS A 38 1555 1555 2.37 LINK ZN ZN A 201 SG CYS A 41 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 44 1555 1555 2.35 LINK ZN ZN A 401 SG CYS A 47 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 66 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 69 1555 1555 2.35
SITE 1 AC1 4 CYS A 18 CYS A 21 HIS A 38 CYS A 41 SITE 1 AC2 4 CYS A 44 CYS A 47 CYS A 66 CYS A 69
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000