1V65 - Header Asymmetric Unit

HEADER GENE REGULATION 27-NOV-03 1V65

TITLE SOLUTION STRUCTURE OF THE KRUPPEL-ASSOCIATED BOX (KRAB) TITLE 2 DOMAIN

COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIKEN CDNA 2610044O15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KRAB DOMAIN; COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 2610044O15; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P020701-06; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS

KEYWDS TRANSCRIPTIONAL REPRESSOR, HETEROCHROMATIN, STRUCTURAL KEYWDS 2 GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 3 RSGI, GENE REGULATION

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)

REVDAT 2 24-FEB-09 1V65 1 VERSN REVDAT 1 01-JUN-04 1V65 0

JRNL AUTH K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE KRUPPEL-ASSOCIATED BOX JRNL TITL 2 (KRAB) DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1V65 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-DEC-03. REMARK 100 THE RCSB ID CODE IS RCSB006254.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM KRAB DOMAIN, 20MM SODIUM REMARK 210 PHOSPHATE BUFFER PH 6.0, 100MM REMARK 210 NACL, 0.02% NAN3, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20020425, NMRVIEW 5, CNS 1.1 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -55.46 -133.59 REMARK 500 1 SER A 5 127.60 -176.48 REMARK 500 1 SER A 6 31.88 -147.76 REMARK 500 1 HIS A 14 31.10 -98.51 REMARK 500 1 MET A 15 30.72 -162.37 REMARK 500 1 THR A 40 70.01 -114.61 REMARK 500 1 TYR A 41 -50.37 -178.53 REMARK 500 1 ASN A 43 45.13 -95.22 REMARK 500 1 ASP A 46 42.78 -105.74 REMARK 500 1 TYR A 49 -176.76 -64.26 REMARK 500 1 GLU A 58 107.62 60.34 REMARK 500 1 SER A 62 31.67 -154.75 REMARK 500 2 VAL A 8 87.94 -66.46 REMARK 500 2 THR A 9 80.41 -68.61 REMARK 500 2 ASP A 11 73.07 60.17 REMARK 500 2 ASP A 12 30.94 -162.19 REMARK 500 2 ASN A 16 41.78 -97.81 REMARK 500 2 THR A 40 42.86 -96.09 REMARK 500 2 TYR A 41 -63.83 -169.74 REMARK 500 2 LEU A 44 49.73 -90.74 REMARK 500 2 ASP A 46 74.30 64.62 REMARK 500 2 ILE A 47 34.73 -97.82 REMARK 500 2 TYR A 49 110.35 60.96 REMARK 500 2 ASP A 53 60.57 -153.39 REMARK 500 2 HIS A 55 74.02 -67.69 REMARK 500 2 GLU A 58 -67.29 -141.29 REMARK 500 2 SER A 62 -178.51 61.26 REMARK 500 3 SER A 3 -47.87 -148.42 REMARK 500 3 SER A 6 177.70 60.30 REMARK 500 3 THR A 9 31.08 -151.70 REMARK 500 3 ASP A 11 118.54 62.86 REMARK 500 3 ASP A 12 33.51 -144.98 REMARK 500 3 PHE A 17 107.82 -59.25 REMARK 500 3 THR A 18 -178.14 -69.27 REMARK 500 3 THR A 40 46.78 -103.97 REMARK 500 3 TYR A 41 -48.76 -166.56 REMARK 500 3 LEU A 44 84.92 58.67 REMARK 500 3 GLN A 52 51.24 -117.21 REMARK 500 3 GLU A 58 -74.91 65.28 REMARK 500 3 SER A 59 92.23 -61.26 REMARK 500 3 PRO A 61 -173.58 -53.55 REMARK 500 4 SER A 2 36.24 -148.62 REMARK 500 4 SER A 3 94.27 60.82 REMARK 500 4 SER A 6 107.63 -164.51 REMARK 500 4 TYR A 10 30.88 -149.04 REMARK 500 4 ASP A 11 92.61 60.31 REMARK 500 4 ASP A 12 33.96 -147.13 REMARK 500 4 MET A 15 42.76 -142.70 REMARK 500 4 THR A 18 -178.06 -68.79 REMARK 500 4 THR A 40 31.62 -151.35 REMARK 500 4 TYR A 41 -50.22 -154.11 REMARK 500 4 LEU A 44 37.03 -97.90 REMARK 500 4 HIS A 55 36.08 -155.40 REMARK 500 4 ILE A 56 37.22 -98.06 REMARK 500 4 GLU A 57 -78.22 64.88 REMARK 500 5 SER A 2 31.79 -162.13 REMARK 500 5 SER A 5 -40.67 -175.98 REMARK 500 5 VAL A 8 139.68 63.82 REMARK 500 5 ASP A 11 48.00 -166.01 REMARK 500 5 ASP A 12 38.14 -152.47 REMARK 500 5 THR A 40 54.05 -90.25 REMARK 500 5 TYR A 41 -56.64 -178.40 REMARK 500 5 ASP A 46 34.27 -179.63 REMARK 500 5 ILE A 47 28.33 -143.25 REMARK 500 5 TYR A 49 167.96 60.72 REMARK 500 5 ASN A 50 90.71 -165.14 REMARK 500 5 SER A 59 38.71 -178.34 REMARK 500 5 SER A 63 149.54 61.84 REMARK 500 6 SER A 2 -178.43 60.63 REMARK 500 6 SER A 3 175.69 60.69 REMARK 500 6 SER A 5 112.07 -163.42 REMARK 500 6 SER A 6 -66.74 -148.54 REMARK 500 6 ASP A 11 97.49 -166.05 REMARK 500 6 THR A 18 -176.93 -68.46 REMARK 500 6 TYR A 41 -46.99 -138.60 REMARK 500 6 ASN A 43 30.06 -97.68 REMARK 500 6 ILE A 47 75.28 46.14 REMARK 500 6 HIS A 54 -46.84 -132.30 REMARK 500 6 GLU A 57 -58.28 -153.90 REMARK 500 7 SER A 3 -43.33 -173.77 REMARK 500 7 MET A 15 88.49 48.33 REMARK 500 7 THR A 40 43.28 -107.20 REMARK 500 7 TYR A 41 -55.25 -159.58 REMARK 500 7 SER A 59 53.81 -110.59 REMARK 500 8 SER A 5 87.21 60.31 REMARK 500 8 THR A 9 90.64 -67.25 REMARK 500 8 TYR A 10 30.08 -145.77 REMARK 500 8 VAL A 13 31.34 -98.12 REMARK 500 8 ASN A 16 62.70 -112.54 REMARK 500 8 THR A 40 46.75 -107.20 REMARK 500 8 TYR A 41 -44.48 -166.76 REMARK 500 8 ASN A 43 23.56 -144.29 REMARK 500 8 TYR A 49 89.43 -157.97 REMARK 500 8 HIS A 55 97.56 59.68 REMARK 500 8 GLU A 58 50.82 -91.22 REMARK 500 8 PRO A 61 178.16 -53.01 REMARK 500 8 SER A 62 -50.82 -177.01 REMARK 500 9 SER A 5 137.30 63.67 REMARK 500 9 THR A 40 33.22 -163.02 REMARK 500 9 TYR A 41 -45.96 -157.42 REMARK 500 9 ASP A 46 88.64 -160.43 REMARK 500 9 ASP A 53 36.77 -168.81 REMARK 500 9 HIS A 54 173.14 60.69 REMARK 500 9 GLU A 57 -66.06 -128.77 REMARK 500 10 SER A 5 -47.39 -139.86 REMARK 500 10 SER A 6 -178.52 -171.79 REMARK 500 10 ASP A 11 91.18 61.75 REMARK 500 10 ASP A 12 31.20 -145.57 REMARK 500 10 ASN A 16 76.84 -113.88 REMARK 500 10 THR A 18 -176.15 -61.41 REMARK 500 10 TYR A 41 -57.52 -176.04 REMARK 500 10 ILE A 47 76.58 47.11 REMARK 500 10 TYR A 49 74.06 61.80 REMARK 500 10 ASN A 50 43.54 -142.18 REMARK 500 10 GLN A 52 39.21 -95.40 REMARK 500 10 ILE A 56 112.93 -174.14 REMARK 500 10 GLU A 57 -52.84 -135.11 REMARK 500 10 GLU A 58 77.68 -169.02 REMARK 500 10 SER A 59 35.65 -99.20 REMARK 500 10 PRO A 61 99.89 -52.50 REMARK 500 10 SER A 62 -52.18 -163.05 REMARK 500 10 SER A 63 -177.79 61.14 REMARK 500 11 SER A 3 89.50 60.39 REMARK 500 11 THR A 9 61.45 -103.19 REMARK 500 11 ASP A 11 39.07 -95.36 REMARK 500 11 MET A 15 30.21 -99.65 REMARK 500 11 THR A 18 -174.63 -63.90 REMARK 500 11 THR A 40 49.01 -101.17 REMARK 500 11 TYR A 41 -62.36 -164.75 REMARK 500 11 ILE A 47 -45.25 -130.42 REMARK 500 11 TYR A 49 -168.60 60.61 REMARK 500 11 ASN A 50 82.31 -162.04 REMARK 500 11 HIS A 55 47.39 -158.66 REMARK 500 11 SER A 59 95.66 -58.50 REMARK 500 12 SER A 2 -47.72 -143.91 REMARK 500 12 SER A 3 116.82 -165.65 REMARK 500 12 ASP A 12 28.06 -146.62 REMARK 500 12 VAL A 13 59.59 -158.98 REMARK 500 12 MET A 15 35.51 -170.10 REMARK 500 12 THR A 18 -177.34 -60.70 REMARK 500 12 THR A 40 44.92 -99.69 REMARK 500 12 TYR A 41 -49.61 -153.83 REMARK 500 12 LEU A 44 66.30 -105.48 REMARK 500 12 TYR A 49 176.86 58.70 REMARK 500 12 ASN A 50 81.51 -168.12 REMARK 500 12 ASP A 53 41.20 -95.75 REMARK 500 12 GLU A 58 88.86 -179.68 REMARK 500 13 THR A 9 87.87 61.76 REMARK 500 13 TYR A 10 31.31 -151.74 REMARK 500 13 ASP A 12 32.32 -151.24 REMARK 500 13 VAL A 13 72.19 -113.70 REMARK 500 13 THR A 40 65.26 -104.87 REMARK 500 13 TYR A 41 -66.49 -162.31 REMARK 500 13 ASN A 43 36.21 -99.12 REMARK 500 13 LEU A 44 42.04 -94.33 REMARK 500 13 ILE A 47 37.03 -97.06 REMARK 500 13 GLU A 58 -79.81 64.37 REMARK 500 14 SER A 2 85.59 60.55 REMARK 500 14 SER A 3 155.87 61.01 REMARK 500 14 SER A 6 114.73 61.73 REMARK 500 14 ASP A 12 29.94 -156.55 REMARK 500 14 MET A 15 71.22 -110.64 REMARK 500 14 THR A 18 -179.76 -62.10 REMARK 500 14 THR A 40 46.39 -95.44 REMARK 500 14 TYR A 41 -44.60 -161.88 REMARK 500 14 HIS A 54 29.17 -160.84 REMARK 500 14 HIS A 55 81.42 54.56 REMARK 500 14 PRO A 61 -71.71 -51.12 REMARK 500 14 SER A 63 -178.96 -62.03 REMARK 500 15 SER A 2 -65.99 -142.69 REMARK 500 15 SER A 3 -48.06 -149.16 REMARK 500 15 VAL A 8 151.80 61.97 REMARK 500 15 ASP A 11 86.64 51.91 REMARK 500 15 ASP A 12 36.13 -168.07 REMARK 500 15 VAL A 13 41.47 -148.64 REMARK 500 15 THR A 40 50.35 -91.78 REMARK 500 15 TYR A 41 -60.31 -174.88 REMARK 500 15 ASN A 43 30.54 -98.83 REMARK 500 15 TYR A 49 109.25 -171.56 REMARK 500 15 HIS A 54 -61.36 -122.16 REMARK 500 15 SER A 59 84.43 64.05 REMARK 500 15 PRO A 61 -73.60 -52.56 REMARK 500 16 SER A 2 -74.82 -124.55 REMARK 500 16 SER A 3 25.94 -149.64 REMARK 500 16 SER A 5 28.51 49.21 REMARK 500 16 TYR A 10 31.46 -99.16 REMARK 500 16 ASN A 16 59.19 -93.00 REMARK 500 16 THR A 40 43.67 -95.62 REMARK 500 16 TYR A 41 -57.47 -156.52 REMARK 500 16 ASN A 43 30.39 -99.98 REMARK 500 16 TRP A 51 22.95 -148.49 REMARK 500 16 ASP A 53 35.19 -177.11 REMARK 500 16 HIS A 54 -179.14 52.49 REMARK 500 16 PRO A 61 158.07 -49.91 REMARK 500 16 SER A 62 48.55 -109.12 REMARK 500 17 ASP A 12 31.50 -162.92 REMARK 500 17 THR A 18 -171.22 -68.68 REMARK 500 17 THR A 40 62.75 -101.25 REMARK 500 17 TYR A 41 -40.22 -176.72 REMARK 500 17 ASN A 43 21.89 -146.80 REMARK 500 17 TYR A 49 118.41 62.55 REMARK 500 17 ASP A 53 93.06 60.20 REMARK 500 17 HIS A 55 90.31 60.22 REMARK 500 17 GLU A 57 -166.12 54.87 REMARK 500 17 SER A 59 31.17 -159.28 REMARK 500 17 PRO A 61 -165.00 -56.88 REMARK 500 17 SER A 62 -176.21 62.79 REMARK 500 17 SER A 63 -68.49 68.49 REMARK 500 18 SER A 3 99.47 63.29 REMARK 500 18 ASP A 12 38.85 -157.66 REMARK 500 18 VAL A 13 84.67 40.84 REMARK 500 18 ASN A 16 79.50 -116.66 REMARK 500 18 THR A 40 32.39 -160.29 REMARK 500 18 TYR A 41 -40.09 -155.93 REMARK 500 18 GLN A 42 35.56 -92.41 REMARK 500 18 ASN A 43 -44.47 -159.80 REMARK 500 18 LEU A 44 88.03 58.16 REMARK 500 18 TYR A 49 114.11 -173.68 REMARK 500 18 ASP A 53 -78.91 61.32 REMARK 500 18 HIS A 54 129.59 63.14 REMARK 500 18 HIS A 55 81.18 -169.06 REMARK 500 18 GLU A 58 92.79 66.70 REMARK 500 19 SER A 3 -70.57 -168.46 REMARK 500 19 THR A 9 89.10 -165.05 REMARK 500 19 ASP A 12 88.47 -171.20 REMARK 500 19 HIS A 14 -93.20 49.82 REMARK 500 19 MET A 15 52.21 -145.92 REMARK 500 19 THR A 40 44.38 -98.18 REMARK 500 19 TYR A 41 -45.58 -153.85 REMARK 500 19 GLN A 42 31.22 -98.61 REMARK 500 19 ASN A 43 26.92 -150.29 REMARK 500 19 ASP A 46 98.44 -172.17 REMARK 500 19 TRP A 51 23.78 -143.37 REMARK 500 19 ASP A 53 41.91 -159.28 REMARK 500 19 HIS A 54 -39.71 -161.06 REMARK 500 19 HIS A 55 111.27 76.98 REMARK 500 19 GLU A 58 111.15 61.30 REMARK 500 20 SER A 2 80.86 -150.43 REMARK 500 20 ASP A 11 34.02 -140.08 REMARK 500 20 HIS A 14 32.26 -96.63 REMARK 500 20 THR A 40 43.90 -103.51 REMARK 500 20 TYR A 41 -44.74 -161.13 REMARK 500 20 ASN A 43 30.42 -98.05 REMARK 500 20 HIS A 54 -178.59 59.37 REMARK 500 20 GLU A 58 -66.05 69.39 REMARK 500 20 PRO A 61 90.94 -58.44 REMARK 500 20 SER A 63 100.85 -174.25 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMK001003721.1 RELATED DB: TARGETDB

DBREF 1V65 A 8 58 UNP Q8BG62 Q8BG62_MOUSE 4 54

SEQADV 1V65 GLY A 1 UNP Q8BG62 CLONING ARTIFACT SEQADV 1V65 SER A 2 UNP Q8BG62 CLONING ARTIFACT SEQADV 1V65 SER A 3 UNP Q8BG62 CLONING ARTIFACT SEQADV 1V65 GLY A 4 UNP Q8BG62 CLONING ARTIFACT SEQADV 1V65 SER A 5 UNP Q8BG62 CLONING ARTIFACT SEQADV 1V65 SER A 6 UNP Q8BG62 CLONING ARTIFACT SEQADV 1V65 GLY A 7 UNP Q8BG62 CLONING ARTIFACT SEQADV 1V65 SER A 59 UNP Q8BG62 CLONING ARTIFACT SEQADV 1V65 GLY A 60 UNP Q8BG62 CLONING ARTIFACT SEQADV 1V65 PRO A 61 UNP Q8BG62 CLONING ARTIFACT SEQADV 1V65 SER A 62 UNP Q8BG62 CLONING ARTIFACT SEQADV 1V65 SER A 63 UNP Q8BG62 CLONING ARTIFACT SEQADV 1V65 GLY A 64 UNP Q8BG62 CLONING ARTIFACT

SEQRES 1 A 64 GLY SER SER GLY SER SER GLY VAL THR TYR ASP ASP VAL SEQRES 2 A 64 HIS MET ASN PHE THR GLU GLU GLU TRP ASP LEU LEU ASP SEQRES 3 A 64 SER SER GLN LYS ARG LEU TYR GLU GLU VAL MET LEU GLU SEQRES 4 A 64 THR TYR GLN ASN LEU THR ASP ILE GLY TYR ASN TRP GLN SEQRES 5 A 64 ASP HIS HIS ILE GLU GLU SER GLY PRO SER SER GLY

HELIX 1 1 GLU A 19 ASP A 23 1 5 HELIX 2 2 SER A 27 GLU A 39 1 13

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000