10 20 30 40 50 60 70 80 1V63 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric Unit
HEADER DNA BINDING PROTEIN 27-NOV-03 1V63
TITLE SOLUTION STRUCTURE OF THE 6TH HMG BOX OF MOUSE UBF1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOLAR TRANSCRIPTION FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HMG BOX DOMAIN; COMPND 5 SYNONYM: UPSTREAM BINDING FACTOR 1, UBF-1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1300010N03; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030107-54; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS TRANSCRIPTION FACTOR, DNA BINDING, STRUCTURAL GENOMICS, KEYWDS 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA KEYWDS 3 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.SATO,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1V63 1 VERSN REVDAT 1 27-MAY-04 1V63 0
JRNL AUTH M.SATO,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 6TH HMG BOX OF MOUSE UBF1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1V63 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-03. REMARK 100 THE RCSB ID CODE IS RCSB006252.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM HMG BOX DOMAIN U-15N, REMARK 210 13C; 20MM PHOSPHATE BUFFER NA; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.816, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 162.99 178.79 REMARK 500 1 SER A 5 -54.27 -145.41 REMARK 500 1 LYS A 10 101.53 -41.81 REMARK 500 1 MET A 13 -63.94 -124.11 REMARK 500 1 ILE A 48 171.76 -46.76 REMARK 500 1 GLN A 52 -72.19 -41.57 REMARK 500 1 SER A 79 178.80 -52.50 REMARK 500 1 ARG A 94 -169.68 44.99 REMARK 500 2 SER A 2 162.09 62.46 REMARK 500 2 SER A 3 81.71 -179.35 REMARK 500 2 SER A 5 -54.53 -161.79 REMARK 500 2 SER A 6 159.27 61.37 REMARK 500 2 PRO A 12 -164.99 -75.06 REMARK 500 2 ASN A 14 -80.40 61.54 REMARK 500 2 LYS A 35 -31.34 -38.28 REMARK 500 2 ILE A 48 162.20 -41.99 REMARK 500 2 GLN A 52 -72.10 -42.53 REMARK 500 2 ALA A 60 -73.11 -58.65 REMARK 500 2 SER A 79 179.41 -49.88 REMARK 500 2 LYS A 93 -69.93 174.77 REMARK 500 2 SER A 96 85.51 -179.02 REMARK 500 2 SER A 100 159.74 63.74 REMARK 500 3 SER A 2 135.21 -173.17 REMARK 500 3 SER A 6 145.16 -171.95 REMARK 500 3 LYS A 10 109.55 -57.07 REMARK 500 3 ILE A 48 -177.87 -51.44 REMARK 500 3 SER A 79 178.95 -58.92 REMARK 500 3 ASN A 92 59.39 -92.18 REMARK 500 3 LYS A 93 -57.88 -150.05 REMARK 500 3 LYS A 95 174.01 58.70 REMARK 500 4 SER A 6 163.09 66.90 REMARK 500 4 PRO A 12 -168.22 -74.99 REMARK 500 4 ASN A 14 -73.46 66.53 REMARK 500 4 LYS A 35 -29.53 -39.86 REMARK 500 4 ILE A 48 179.36 -50.12 REMARK 500 4 SER A 79 179.60 -50.95 REMARK 500 4 LYS A 93 -52.63 -154.15 REMARK 500 4 LYS A 95 -68.39 -159.03 REMARK 500 4 SER A 100 144.08 64.25 REMARK 500 5 SER A 2 133.87 -172.52 REMARK 500 5 SER A 3 140.86 -176.08 REMARK 500 5 SER A 6 159.21 179.71 REMARK 500 5 LYS A 10 107.67 -52.75 REMARK 500 5 ASN A 14 -58.31 74.77 REMARK 500 5 LYS A 35 -70.07 -33.75 REMARK 500 5 ILE A 48 164.82 -42.94 REMARK 500 5 GLN A 52 -72.01 -65.39 REMARK 500 5 SER A 79 178.21 -55.34 REMARK 500 5 ARG A 94 -175.11 47.46 REMARK 500 5 SER A 96 -51.88 -144.83 REMARK 500 6 SER A 5 127.94 -175.44 REMARK 500 6 LYS A 10 109.59 -57.35 REMARK 500 6 MET A 13 -65.41 -103.94 REMARK 500 6 ILE A 48 169.12 -45.58 REMARK 500 6 GLN A 52 -71.99 -43.93 REMARK 500 6 SER A 79 179.67 -53.35 REMARK 500 6 SER A 91 47.29 -86.33 REMARK 500 6 ASN A 92 44.97 177.27 REMARK 500 6 LYS A 93 -62.04 -147.29 REMARK 500 6 LYS A 95 60.47 75.84 REMARK 500 6 SER A 99 174.08 64.45 REMARK 500 6 SER A 100 118.77 66.42 REMARK 500 7 SER A 3 86.25 55.70 REMARK 500 7 SER A 5 -57.15 -133.05 REMARK 500 7 SER A 6 -68.96 -106.44 REMARK 500 7 PRO A 12 -163.07 -74.97 REMARK 500 7 MET A 13 -45.02 -150.01 REMARK 500 7 LYS A 35 -70.28 -36.12 REMARK 500 7 ILE A 48 167.03 -44.56 REMARK 500 7 SER A 49 -168.33 -102.30 REMARK 500 7 GLN A 52 -72.01 -45.80 REMARK 500 7 GLU A 88 -38.14 -39.21 REMARK 500 7 ASN A 92 55.60 -93.04 REMARK 500 7 LYS A 93 -60.22 -161.90 REMARK 500 7 LYS A 95 -62.82 -97.42 REMARK 500 8 SER A 3 89.47 41.90 REMARK 500 8 PRO A 12 -165.96 -75.05 REMARK 500 8 MET A 13 -70.28 -134.55 REMARK 500 8 LYS A 35 -70.40 -35.96 REMARK 500 8 MET A 38 -32.63 -39.80 REMARK 500 8 ILE A 48 167.65 -44.65 REMARK 500 8 GLN A 52 -71.40 -50.58 REMARK 500 8 SER A 79 -179.02 -63.56 REMARK 500 8 ASN A 92 59.33 -90.66 REMARK 500 8 LYS A 93 -60.69 -164.48 REMARK 500 9 SER A 5 -69.17 75.37 REMARK 500 9 ASN A 14 -65.49 81.52 REMARK 500 9 ILE A 48 -179.91 -50.53 REMARK 500 9 SER A 79 175.11 -47.53 REMARK 500 9 GLU A 88 -39.38 -38.69 REMARK 500 9 ARG A 94 -174.55 47.11 REMARK 500 9 LYS A 95 149.38 61.06 REMARK 500 9 SER A 96 96.38 -176.01 REMARK 500 10 SER A 3 107.50 -176.85 REMARK 500 10 SER A 5 -56.17 176.79 REMARK 500 10 PRO A 12 -166.06 -75.08 REMARK 500 10 MET A 13 -72.42 -126.50 REMARK 500 10 ILE A 48 164.99 -43.06 REMARK 500 10 SER A 79 178.31 -54.43 REMARK 500 10 GLU A 88 -38.22 -39.60 REMARK 500 10 ARG A 94 171.99 69.97 REMARK 500 10 SER A 99 144.47 178.59 REMARK 500 11 SER A 3 105.38 -50.50 REMARK 500 11 SER A 5 -60.15 -162.37 REMARK 500 11 LYS A 10 105.28 -40.07 REMARK 500 11 ASN A 14 138.26 -173.85 REMARK 500 11 LYS A 35 -31.89 -38.62 REMARK 500 11 ILE A 48 167.69 -44.34 REMARK 500 11 SER A 51 -39.96 -38.39 REMARK 500 11 GLN A 52 -72.02 -72.26 REMARK 500 11 LYS A 53 -38.59 -39.47 REMARK 500 11 LYS A 93 -63.38 -174.31 REMARK 500 11 SER A 99 -59.02 -133.89 REMARK 500 12 SER A 2 -60.74 -162.54 REMARK 500 12 SER A 5 -60.19 -129.60 REMARK 500 12 LYS A 10 105.57 -46.50 REMARK 500 12 MET A 13 -65.34 -134.65 REMARK 500 12 ILE A 48 174.57 -47.94 REMARK 500 12 GLN A 52 -71.63 -46.14 REMARK 500 12 SER A 79 178.91 -54.76 REMARK 500 12 GLU A 88 -39.89 -39.75 REMARK 500 12 LYS A 95 -74.02 -166.51 REMARK 500 12 SER A 100 81.31 44.53 REMARK 500 13 SER A 2 -64.04 -125.65 REMARK 500 13 SER A 3 93.69 61.97 REMARK 500 13 SER A 5 89.48 57.06 REMARK 500 13 SER A 6 147.08 178.90 REMARK 500 13 LYS A 10 100.44 -40.48 REMARK 500 13 ASN A 14 -53.57 171.30 REMARK 500 13 ILE A 48 160.55 -40.76 REMARK 500 13 GLN A 52 -72.31 -61.32 REMARK 500 13 SER A 79 178.57 -53.91 REMARK 500 13 ALA A 85 -60.67 -90.83 REMARK 500 13 ARG A 94 89.44 39.10 REMARK 500 14 SER A 3 112.73 68.01 REMARK 500 14 SER A 5 -59.18 -169.33 REMARK 500 14 LYS A 10 109.87 -40.55 REMARK 500 14 ASN A 14 -81.52 61.24 REMARK 500 14 ILE A 48 179.66 -50.74 REMARK 500 14 GLN A 52 -72.11 -53.28 REMARK 500 14 SER A 79 179.60 -52.05 REMARK 500 14 ASN A 92 59.62 -94.48 REMARK 500 14 LYS A 93 -59.90 -159.62 REMARK 500 14 LYS A 95 94.78 62.44 REMARK 500 14 SER A 99 115.33 69.40 REMARK 500 14 SER A 100 102.56 -179.34 REMARK 500 15 SER A 2 -59.66 -166.22 REMARK 500 15 SER A 5 110.30 61.85 REMARK 500 15 SER A 6 122.78 171.10 REMARK 500 15 LYS A 10 107.35 -49.65 REMARK 500 15 ASN A 14 -62.72 82.58 REMARK 500 15 ILE A 48 175.71 -48.73 REMARK 500 15 GLN A 52 -72.18 -53.09 REMARK 500 15 LYS A 95 -64.96 -109.90 REMARK 500 16 SER A 5 107.45 -160.25 REMARK 500 16 SER A 6 158.09 173.19 REMARK 500 16 LYS A 9 -176.72 -53.92 REMARK 500 16 PRO A 12 -162.43 -75.03 REMARK 500 16 MET A 13 -59.19 -127.80 REMARK 500 16 ILE A 48 177.46 -49.04 REMARK 500 16 ARG A 94 88.97 40.02 REMARK 500 16 SER A 100 168.62 56.53 REMARK 500 17 SER A 2 100.31 53.35 REMARK 500 17 MET A 13 -58.82 -121.37 REMARK 500 17 LYS A 35 -29.50 -39.48 REMARK 500 17 ILE A 48 160.03 -40.53 REMARK 500 17 GLN A 52 -72.16 -46.47 REMARK 500 17 TYR A 56 -29.45 -38.47 REMARK 500 17 SER A 79 178.39 -53.77 REMARK 500 18 SER A 3 114.57 -174.14 REMARK 500 18 SER A 5 112.35 -178.24 REMARK 500 18 SER A 6 145.65 -178.98 REMARK 500 18 LYS A 10 102.18 -42.42 REMARK 500 18 ILE A 48 170.52 -45.92 REMARK 500 18 SER A 49 -167.08 -102.65 REMARK 500 18 GLN A 52 -71.00 -56.71 REMARK 500 18 SER A 79 178.66 -58.94 REMARK 500 18 LYS A 93 -63.75 -165.52 REMARK 500 19 SER A 2 115.76 -174.39 REMARK 500 19 SER A 5 109.55 -165.80 REMARK 500 19 LYS A 10 108.63 -52.67 REMARK 500 19 LYS A 35 -35.53 -35.29 REMARK 500 19 ILE A 48 173.30 -47.48 REMARK 500 19 GLN A 52 -70.93 -46.61 REMARK 500 19 SER A 79 174.55 -47.20 REMARK 500 19 ARG A 94 -177.52 48.59 REMARK 500 19 SER A 96 172.36 -51.94 REMARK 500 19 SER A 99 150.69 63.87 REMARK 500 19 SER A 100 -57.66 -163.21 REMARK 500 20 SER A 5 78.80 70.57 REMARK 500 20 SER A 6 70.60 -101.48 REMARK 500 20 LYS A 9 26.09 -152.98 REMARK 500 20 LYS A 10 103.28 61.00 REMARK 500 20 ASN A 14 -60.81 74.83 REMARK 500 20 ILE A 48 177.81 -49.49 REMARK 500 20 GLN A 52 -71.82 -48.68 REMARK 500 20 SER A 79 178.62 -51.00 REMARK 500 20 ASN A 92 59.13 -92.17 REMARK 500 20 LYS A 93 -58.22 -157.67 REMARK 500 20 LYS A 95 88.10 44.49 REMARK 500 20 SER A 96 95.07 -64.47 REMARK 500 20 SER A 99 -58.80 75.08 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007011339.3 RELATED DB: TARGETDB
DBREF 1V63 A 8 95 UNP P25976 UBF1_MOUSE 567 654
SEQADV 1V63 GLY A 1 UNP P25976 CLONING ARTIFACT SEQADV 1V63 SER A 2 UNP P25976 CLONING ARTIFACT SEQADV 1V63 SER A 3 UNP P25976 CLONING ARTIFACT SEQADV 1V63 GLY A 4 UNP P25976 CLONING ARTIFACT SEQADV 1V63 SER A 5 UNP P25976 CLONING ARTIFACT SEQADV 1V63 SER A 6 UNP P25976 CLONING ARTIFACT SEQADV 1V63 GLY A 7 UNP P25976 CLONING ARTIFACT SEQADV 1V63 SER A 96 UNP P25976 CLONING ARTIFACT SEQADV 1V63 GLY A 97 UNP P25976 CLONING ARTIFACT SEQADV 1V63 PRO A 98 UNP P25976 CLONING ARTIFACT SEQADV 1V63 SER A 99 UNP P25976 CLONING ARTIFACT SEQADV 1V63 SER A 100 UNP P25976 CLONING ARTIFACT SEQADV 1V63 GLY A 101 UNP P25976 CLONING ARTIFACT
SEQRES 1 A 101 GLY SER SER GLY SER SER GLY PRO LYS LYS PRO PRO MET SEQRES 2 A 101 ASN GLY TYR GLN LYS PHE SER GLN GLU LEU LEU SER ASN SEQRES 3 A 101 GLY GLU LEU ASN HIS LEU PRO LEU LYS GLU ARG MET VAL SEQRES 4 A 101 GLU ILE GLY SER ARG TRP GLN ARG ILE SER GLN SER GLN SEQRES 5 A 101 LYS GLU HIS TYR LYS LYS LEU ALA GLU GLU GLN GLN ARG SEQRES 6 A 101 GLN TYR LYS VAL HIS LEU ASP LEU TRP VAL LYS SER LEU SEQRES 7 A 101 SER PRO GLN ASP ARG ALA ALA TYR LYS GLU TYR ILE SER SEQRES 8 A 101 ASN LYS ARG LYS SER GLY PRO SER SER GLY
HELIX 1 1 GLY A 15 GLY A 27 1 13 HELIX 2 2 PRO A 33 GLN A 46 1 14 HELIX 3 3 SER A 49 LEU A 78 1 30 HELIX 4 4 GLN A 81 LYS A 93 1 13
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000