10 20 30 40 50 60 70 80 1V5R - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER APOPTOSIS 25-NOV-03 1V5R
TITLE SOLUTION STRUCTURE OF THE GAS2 DOMAIN OF THE GROWTH ARREST TITLE 2 SPECIFIC 2 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH-ARREST-SPECIFIC PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GAS2 DOMAIN; COMPND 5 SYNONYM: GROWTH ARREST SPECIFIC 2 PROTEIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 4631403A13; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P020417-07; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS GAS2 DOMAIN, ZINC BINDING DOMAIN, GROWTH ARREST, APOPTOSIS, KEYWDS 2 CELL CYCLE, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.MIYAMOTO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1V5R 1 VERSN REVDAT 1 18-JAN-05 1V5R 0
JRNL AUTH K.MIYAMOTO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE GAS2 DOMAIN OF THE JRNL TITL 2 GROWTH ARREST SPECIFIC 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1V5R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-03. REMARK 100 THE RCSB ID CODE IS RCSB006240.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.03MM GAS2 DOMAIN U-13C, REMARK 210 15N; 20MM D-TRIS-HCL(PH 7.5); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 100UM ZNCL2; 90% H2O, REMARK 210 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.863, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 175.68 -55.16 REMARK 500 1 ASP A 20 104.99 -172.49 REMARK 500 1 CYS A 25 152.64 -36.84 REMARK 500 1 PRO A 26 1.04 -69.73 REMARK 500 1 GLN A 36 109.52 -34.72 REMARK 500 1 LYS A 54 -35.71 -130.12 REMARK 500 1 ILE A 82 108.14 -53.74 REMARK 500 1 ASP A 86 -60.73 -106.62 REMARK 500 1 SER A 92 152.47 -38.38 REMARK 500 2 SER A 5 42.31 -99.12 REMARK 500 2 ASN A 8 44.60 72.73 REMARK 500 2 ASP A 20 105.11 -174.55 REMARK 500 2 CYS A 25 152.63 -44.55 REMARK 500 2 LYS A 54 -37.90 -131.45 REMARK 500 2 MET A 79 -36.09 -39.74 REMARK 500 2 GLN A 81 175.21 -56.35 REMARK 500 3 SER A 2 41.96 37.76 REMARK 500 3 ASP A 20 105.00 -173.06 REMARK 500 3 CYS A 23 103.43 -48.75 REMARK 500 3 CYS A 25 153.01 -47.69 REMARK 500 3 PRO A 26 3.67 -69.69 REMARK 500 3 PHE A 29 153.25 -35.52 REMARK 500 3 GLN A 36 91.04 -55.12 REMARK 500 3 GLN A 81 30.98 -84.51 REMARK 500 3 PRO A 94 2.43 -69.75 REMARK 500 3 SER A 96 41.75 -85.22 REMARK 500 4 SER A 5 42.26 -83.15 REMARK 500 4 ASP A 20 104.98 -174.95 REMARK 500 4 CYS A 25 152.66 -37.80 REMARK 500 4 PRO A 26 2.33 -69.73 REMARK 500 4 SER A 83 128.44 -171.93 REMARK 500 4 LYS A 88 104.95 -51.90 REMARK 500 5 CYS A 25 153.30 -37.84 REMARK 500 5 PRO A 26 3.29 -69.75 REMARK 500 5 LYS A 54 -33.81 -131.66 REMARK 500 5 LEU A 80 -31.26 -38.60 REMARK 500 5 GLN A 81 30.93 -85.20 REMARK 500 5 ARG A 84 140.26 -33.31 REMARK 500 5 ASP A 86 149.38 -36.25 REMARK 500 5 PRO A 91 -175.16 -69.73 REMARK 500 5 SER A 92 -60.46 -91.30 REMARK 500 5 PRO A 94 -176.62 -69.75 REMARK 500 6 LEU A 9 -63.27 -90.09 REMARK 500 6 ALA A 13 -70.03 -67.39 REMARK 500 6 CYS A 25 147.60 -37.20 REMARK 500 6 PRO A 26 3.03 -69.82 REMARK 500 6 GLN A 36 98.71 -56.87 REMARK 500 6 VAL A 60 78.56 -111.47 REMARK 500 6 MET A 79 -25.48 -39.98 REMARK 500 6 LEU A 80 39.97 -81.79 REMARK 500 6 GLN A 81 -33.85 -130.56 REMARK 500 6 ILE A 82 122.70 -33.80 REMARK 500 6 ASP A 86 150.98 -45.95 REMARK 500 6 PRO A 91 -174.70 -69.79 REMARK 500 7 SER A 3 42.23 -106.07 REMARK 500 7 SER A 6 112.86 -162.74 REMARK 500 7 ASP A 20 104.99 -169.95 REMARK 500 7 CYS A 25 152.07 -36.72 REMARK 500 7 PRO A 26 0.92 -69.78 REMARK 500 7 SER A 35 -178.02 -171.10 REMARK 500 7 LEU A 80 38.35 -82.74 REMARK 500 7 GLN A 81 -71.37 -108.81 REMARK 500 7 SER A 95 84.20 -58.66 REMARK 500 8 ASP A 20 105.04 -171.52 REMARK 500 8 CYS A 25 153.71 -43.07 REMARK 500 8 PRO A 26 3.83 -69.71 REMARK 500 8 LEU A 80 45.81 -77.95 REMARK 500 8 SER A 83 43.70 -80.03 REMARK 500 8 ARG A 84 52.09 32.34 REMARK 500 8 LYS A 88 147.89 -171.30 REMARK 500 9 CYS A 25 152.50 -36.56 REMARK 500 9 PRO A 26 0.08 -69.77 REMARK 500 9 ILE A 82 -66.62 -132.99 REMARK 500 9 SER A 83 127.02 -172.70 REMARK 500 9 SER A 92 129.02 -175.07 REMARK 500 10 ASP A 20 105.01 -174.90 REMARK 500 10 CYS A 23 109.86 -51.56 REMARK 500 10 CYS A 25 152.95 -42.36 REMARK 500 10 PRO A 26 3.67 -69.78 REMARK 500 10 GLN A 36 95.74 -58.05 REMARK 500 10 LYS A 54 -38.93 -130.20 REMARK 500 10 MET A 79 -29.63 -39.86 REMARK 500 10 ILE A 82 54.11 35.93 REMARK 500 11 ASP A 20 104.99 -175.15 REMARK 500 11 CYS A 25 153.13 -36.41 REMARK 500 11 ASN A 53 29.91 41.97 REMARK 500 11 VAL A 60 40.61 -101.92 REMARK 500 11 ASP A 86 143.56 -171.14 REMARK 500 11 SER A 95 110.72 -169.25 REMARK 500 12 CYS A 25 152.65 -35.05 REMARK 500 12 PRO A 26 2.98 -69.75 REMARK 500 12 HIS A 52 29.79 47.08 REMARK 500 12 LYS A 54 -38.38 -135.03 REMARK 500 12 LEU A 80 -38.86 -33.80 REMARK 500 12 GLN A 81 113.25 -34.87 REMARK 500 12 ILE A 82 156.78 -44.70 REMARK 500 12 ARG A 84 42.59 -87.23 REMARK 500 12 VAL A 85 42.25 -105.89 REMARK 500 13 ASP A 20 105.01 -175.08 REMARK 500 13 CYS A 25 153.23 -37.51 REMARK 500 13 PRO A 26 3.92 -69.84 REMARK 500 13 GLN A 36 90.67 -57.12 REMARK 500 13 MET A 79 -37.82 -39.75 REMARK 500 13 LEU A 80 -35.02 -33.82 REMARK 500 13 SER A 83 124.99 -34.57 REMARK 500 13 ARG A 84 178.76 -51.38 REMARK 500 13 PRO A 94 1.83 -69.82 REMARK 500 13 SER A 95 148.49 -36.25 REMARK 500 14 ASN A 8 140.59 -35.29 REMARK 500 14 ASP A 20 105.44 -174.05 REMARK 500 14 CYS A 25 153.55 -35.70 REMARK 500 14 PRO A 26 3.88 -69.76 REMARK 500 14 GLN A 36 101.07 -53.81 REMARK 500 14 GLN A 81 36.47 -83.02 REMARK 500 15 SER A 2 47.43 -83.96 REMARK 500 15 ASP A 20 105.06 -173.78 REMARK 500 15 CYS A 23 107.26 -56.41 REMARK 500 15 CYS A 25 152.61 -39.67 REMARK 500 15 PRO A 26 2.65 -69.71 REMARK 500 15 LYS A 54 -37.98 -130.10 REMARK 500 15 LEU A 80 -36.64 -37.84 REMARK 500 15 GLN A 81 132.75 -34.32 REMARK 500 15 SER A 83 122.60 -38.67 REMARK 500 15 ARG A 84 164.71 -42.44 REMARK 500 15 SER A 92 106.72 -174.31 REMARK 500 15 PRO A 94 -178.31 -69.74 REMARK 500 16 ASP A 20 105.00 -174.57 REMARK 500 16 CYS A 25 151.32 -35.93 REMARK 500 16 PRO A 26 2.56 -69.80 REMARK 500 16 LYS A 54 -34.47 -134.09 REMARK 500 16 GLN A 81 145.67 -38.01 REMARK 500 16 LYS A 88 119.57 -170.65 REMARK 500 16 PRO A 94 -173.68 -69.81 REMARK 500 17 ASP A 20 105.03 -174.15 REMARK 500 17 CYS A 25 153.53 -38.10 REMARK 500 17 PRO A 26 3.98 -69.80 REMARK 500 17 LEU A 80 -31.47 -35.12 REMARK 500 17 GLN A 81 -71.76 -32.81 REMARK 500 17 ILE A 82 -43.87 -130.93 REMARK 500 17 ASP A 86 45.10 -80.97 REMARK 500 17 THR A 89 141.13 -33.93 REMARK 500 17 SER A 95 119.96 -163.12 REMARK 500 18 SER A 6 42.32 -92.03 REMARK 500 18 ASP A 20 105.16 -174.77 REMARK 500 18 CYS A 25 152.16 -36.58 REMARK 500 18 PRO A 26 1.82 -69.73 REMARK 500 18 PHE A 29 158.06 -49.63 REMARK 500 18 GLN A 36 78.87 -58.99 REMARK 500 18 GLN A 81 150.58 -47.18 REMARK 500 19 LEU A 9 -63.03 -97.71 REMARK 500 19 CYS A 25 152.27 -34.94 REMARK 500 19 PRO A 26 2.85 -69.78 REMARK 500 19 PHE A 29 173.55 -49.62 REMARK 500 19 GLN A 36 94.27 -58.43 REMARK 500 19 GLU A 43 28.32 37.55 REMARK 500 19 LEU A 80 50.84 -109.21 REMARK 500 19 SER A 83 131.09 -174.29 REMARK 500 19 SER A 92 124.09 -34.18 REMARK 500 20 SER A 2 126.93 -172.23 REMARK 500 20 SER A 3 42.44 -83.38 REMARK 500 20 ASP A 20 105.03 -174.52 REMARK 500 20 CYS A 25 154.82 -36.75 REMARK 500 20 PRO A 26 3.80 -69.77 REMARK 500 20 GLU A 43 37.19 36.56 REMARK 500 20 LEU A 80 42.16 -80.60 REMARK 500 20 SER A 83 122.09 -32.78 REMARK 500 20 ASP A 86 172.89 -47.43 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 23 SG REMARK 620 2 CYS A 25 SG 110.1 REMARK 620 3 ASP A 75 OD1 114.7 116.5 REMARK 620 4 CYS A 77 SG 116.6 112.0 85.1 REMARK 620 N 1 2 3
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007016392 RELATED DB: TARGETDB
DBREF 1V5R A 8 91 UNP P11862 GAS2_MOUSE 201 284
SEQADV 1V5R GLY A 1 UNP P11862 CLONING ARTIFACT SEQADV 1V5R SER A 2 UNP P11862 CLONING ARTIFACT SEQADV 1V5R SER A 3 UNP P11862 CLONING ARTIFACT SEQADV 1V5R GLY A 4 UNP P11862 CLONING ARTIFACT SEQADV 1V5R SER A 5 UNP P11862 CLONING ARTIFACT SEQADV 1V5R SER A 6 UNP P11862 CLONING ARTIFACT SEQADV 1V5R GLY A 7 UNP P11862 CLONING ARTIFACT SEQADV 1V5R SER A 92 UNP P11862 CLONING ARTIFACT SEQADV 1V5R GLY A 93 UNP P11862 CLONING ARTIFACT SEQADV 1V5R PRO A 94 UNP P11862 CLONING ARTIFACT SEQADV 1V5R SER A 95 UNP P11862 CLONING ARTIFACT SEQADV 1V5R SER A 96 UNP P11862 CLONING ARTIFACT SEQADV 1V5R GLY A 97 UNP P11862 CLONING ARTIFACT
SEQRES 1 A 97 GLY SER SER GLY SER SER GLY ASN LEU LEU ASP ASP ALA SEQRES 2 A 97 VAL LYS ARG ILE SER GLU ASP PRO PRO CYS LYS CYS PRO SEQRES 3 A 97 THR LYS PHE CYS VAL GLU ARG LEU SER GLN GLY ARG TYR SEQRES 4 A 97 ARG VAL GLY GLU LYS ILE LEU PHE ILE ARG MET LEU HIS SEQRES 5 A 97 ASN LYS HIS VAL MET VAL ARG VAL GLY GLY GLY TRP GLU SEQRES 6 A 97 THR PHE ALA GLY TYR LEU LEU LYS HIS ASP PRO CYS ARG SEQRES 7 A 97 MET LEU GLN ILE SER ARG VAL ASP GLY LYS THR SER PRO SEQRES 8 A 97 SER GLY PRO SER SER GLY
HET ZN A 201 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 LEU A 9 SER A 18 1 10 HELIX 2 2 PHE A 67 HIS A 74 1 8 HELIX 3 3 PRO A 76 MET A 79 1 4
SHEET 1 A 5 VAL A 31 SER A 35 0 SHEET 2 A 5 ARG A 38 VAL A 41 -1 O ARG A 40 N GLU A 32 SHEET 3 A 5 LYS A 44 LEU A 51 -1 O LYS A 44 N VAL A 41 SHEET 4 A 5 HIS A 55 VAL A 60 -1 O HIS A 55 N LEU A 51 SHEET 5 A 5 GLY A 63 THR A 66 -1 O GLY A 63 N VAL A 60
LINK ZN ZN A 201 SG CYS A 23 1555 1555 2.33 LINK ZN ZN A 201 SG CYS A 25 1555 1555 2.34 LINK ZN ZN A 201 OD1 ASP A 75 1555 1555 2.36 LINK ZN ZN A 201 SG CYS A 77 1555 1555 2.37
CISPEP 1 ASP A 20 PRO A 21 1 0.03 CISPEP 2 ASP A 20 PRO A 21 2 0.03 CISPEP 3 ASP A 20 PRO A 21 3 0.06 CISPEP 4 ASP A 20 PRO A 21 4 0.04 CISPEP 5 ASP A 20 PRO A 21 5 0.05 CISPEP 6 ASP A 20 PRO A 21 6 -0.01 CISPEP 7 ASP A 20 PRO A 21 7 0.07 CISPEP 8 ASP A 20 PRO A 21 8 0.00 CISPEP 9 ASP A 20 PRO A 21 9 0.06 CISPEP 10 ASP A 20 PRO A 21 10 -0.01 CISPEP 11 ASP A 20 PRO A 21 11 0.01 CISPEP 12 ASP A 20 PRO A 21 12 0.02 CISPEP 13 ASP A 20 PRO A 21 13 -0.01 CISPEP 14 ASP A 20 PRO A 21 14 0.03 CISPEP 15 ASP A 20 PRO A 21 15 -0.05 CISPEP 16 ASP A 20 PRO A 21 16 0.07 CISPEP 17 ASP A 20 PRO A 21 17 0.01 CISPEP 18 ASP A 20 PRO A 21 18 0.00 CISPEP 19 ASP A 20 PRO A 21 19 0.01 CISPEP 20 ASP A 20 PRO A 21 20 0.03
SITE 1 AC1 4 CYS A 23 CYS A 25 ASP A 75 CYS A 77
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000