10 20 30 40 50 60 70 80 1V4R - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER GENE REGULATION 17-NOV-03 1V4R
TITLE SOLUTION STRUCTURE OF STREPTMYCAL REPRESSOR TRAR
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REPRESSOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES; SOURCE 3 ORGANISM_TAXID: 1883; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24A, PSN22
KEYWDS HELIX-TURN-HELIX, WINGED-HELIX, GENE REGULATION
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR T.TANAKA,C.KOMATSU,K.KOBAYASHI,M.SUGAI,M.KATAOKA,T.KOHNO
REVDAT 2 24-FEB-09 1V4R 1 VERSN REVDAT 1 01-MAR-05 1V4R 0
JRNL AUTH T.TANAKA,C.KOMATSU,K.KOBAYASHI,M.SUGAI,M.KATAOKA, JRNL AUTH 2 T.KOHNO JRNL TITL SOLUTION STRUCTURE OF STREPTMYCAL REPRESSOR TRAR JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1V4R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-NOV-03. REMARK 100 THE RCSB ID CODE IS RCSB006204.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 2MM TRAR U-15N,13C; 50MM REMARK 210 PHOSPHATE BUFFER NA, 100MM REMARK 210 NACL; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D_13C-SEPARATED_ REMARK 210 NOESY, 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG 3.3, AZARA 2.7, X-PLOR REMARK 210 3.1, XWINNMR 2.6 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 MATRIX RELAXATION, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 120 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 4 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 23 -75.93 -75.88 REMARK 500 1 GLU A 26 -15.20 111.79 REMARK 500 1 LEU A 27 58.50 -112.79 REMARK 500 1 LEU A 62 37.27 73.20 REMARK 500 1 ALA A 68 -63.89 -142.23 REMARK 500 1 LYS A 75 -85.59 -98.85 REMARK 500 1 VAL A 79 79.28 -55.30 REMARK 500 1 ARG A 88 111.23 66.53 REMARK 500 2 LEU A 62 66.70 63.04 REMARK 500 2 ALA A 68 -60.73 -160.87 REMARK 500 2 LYS A 75 88.55 -68.51 REMARK 500 2 ILE A 78 105.52 -55.70 REMARK 500 2 VAL A 79 72.00 65.85 REMARK 500 3 GLU A 7 -74.41 -99.66 REMARK 500 3 LEU A 33 109.69 -57.52 REMARK 500 3 ALA A 68 -16.69 -160.71 REMARK 500 3 LYS A 75 49.01 -84.87 REMARK 500 3 VAL A 79 43.50 33.90 REMARK 500 3 ARG A 88 -164.71 -76.98 REMARK 500 4 LEU A 62 80.33 69.74 REMARK 500 4 VAL A 79 91.60 -52.49 REMARK 500 4 LEU A 86 -89.88 57.18 REMARK 500 4 MET A 89 -55.51 70.23 REMARK 500 5 GLU A 7 -157.61 -86.95 REMARK 500 5 LEU A 27 72.77 -109.16 REMARK 500 5 LEU A 69 -62.10 -92.05 REMARK 500 5 LYS A 75 78.67 -69.18 REMARK 500 5 THR A 81 -54.88 -158.87 REMARK 500 5 LEU A 86 -81.65 59.45 REMARK 500 5 MET A 89 108.65 -58.13 REMARK 500 5 LYS A 91 79.38 -118.31 REMARK 500 5 MET A 94 52.83 -106.19 REMARK 500 6 LYS A 23 -81.04 -61.09 REMARK 500 6 LEU A 62 80.05 75.16 REMARK 500 6 ALA A 68 -68.30 -149.25 REMARK 500 6 LYS A 75 38.53 -79.22 REMARK 500 6 VAL A 79 74.82 -65.24 REMARK 500 6 LEU A 86 93.96 -68.98 REMARK 500 6 LYS A 87 -44.39 -161.99 REMARK 500 7 GLU A 7 -77.44 -69.33 REMARK 500 7 LYS A 23 -79.64 -66.06 REMARK 500 7 GLU A 26 9.79 59.53 REMARK 500 7 ALA A 68 -47.26 -160.23 REMARK 500 7 LYS A 75 92.73 -66.63 REMARK 500 8 PRO A 2 36.39 -86.22 REMARK 500 8 GLU A 7 -89.45 -93.23 REMARK 500 8 LEU A 62 78.28 63.29 REMARK 500 8 SER A 64 77.21 147.90 REMARK 500 8 THR A 81 -28.00 -142.53 REMARK 500 8 LYS A 87 -10.46 -157.91 REMARK 500 8 ARG A 88 -55.67 -175.07 REMARK 500 8 MET A 89 -70.08 -149.92 REMARK 500 8 GLU A 90 -74.33 -142.42 REMARK 500 9 LYS A 23 -77.02 -48.00 REMARK 500 9 LEU A 62 66.95 66.20 REMARK 500 9 ALA A 68 -55.87 -160.76 REMARK 500 9 VAL A 79 70.26 23.62 REMARK 500 9 ALA A 83 -72.14 61.52 REMARK 500 9 LYS A 87 -66.64 -121.17 REMARK 500 9 ARG A 88 -74.89 67.46 REMARK 500 9 GLU A 90 -65.80 75.20 REMARK 500 10 GLU A 7 -73.81 -99.87 REMARK 500 10 LYS A 23 -77.48 -67.64 REMARK 500 10 LEU A 27 78.31 -113.31 REMARK 500 10 ALA A 68 -71.02 -158.95 REMARK 500 10 LYS A 75 -81.10 -95.82 REMARK 500 10 VAL A 79 79.84 -56.68 REMARK 500 10 THR A 81 38.88 -83.38 REMARK 500 10 MET A 89 -82.12 63.36 REMARK 500 10 GLU A 90 46.48 -89.83 REMARK 500 10 MET A 94 53.87 -91.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 35 VAL A 36 7 142.48 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1V4R A -1 100 PDB 1V4R 1V4R -1 100
SEQRES 1 A 102 GLY PRO MET PRO TYR LYS ALA PRO GLU GLY LYS GLY TYR SEQRES 2 A 102 ALA ASP VAL ALA THR HIS PHE ARG THR LEU ILE LYS SER SEQRES 3 A 102 GLY GLU LEU ALA PRO GLY ASP THR LEU PRO SER VAL ALA SEQRES 4 A 102 ASP ILE ARG ALA GLN PHE GLY VAL ALA ALA LYS THR VAL SEQRES 5 A 102 SER ARG ALA LEU ALA VAL LEU LYS SER GLU GLY LEU VAL SEQRES 6 A 102 SER SER ARG GLY ALA LEU GLY THR VAL VAL GLU LYS ASN SEQRES 7 A 102 PRO ILE VAL ILE THR GLY ALA ASP ARG LEU LYS ARG MET SEQRES 8 A 102 GLU LYS ASN GLY MET ARG TYR ALA PRO GLY GLU
HELIX 1 1 GLY A 10 ILE A 22 1 13 HELIX 2 2 SER A 35 PHE A 43 1 9 HELIX 3 3 LYS A 48 LEU A 54 1 7 HELIX 4 4 GLY A 82 ARG A 88 1 7
SHEET 1 A 2 SER A 64 ARG A 66 0 SHEET 2 A 2 GLY A 70 VAL A 72 -1 N GLY A 70 O ARG A 66
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000