10 20 30 40 50 60 70 80 1V4I - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 14-NOV-03 1V4I
TITLE CRYSTAL STRUCTURE OF OCTAPRENYL PYROPHOSPHATE SYNTHASE FROM TITLE 2 HYPERTHERMOPHILIC THERMOTOGA MARITIMA F132A MUTANT
COMPND MOL_ID: 1; COMPND 2 MOLECULE: OCTOPRENYL-DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OCTAPRENYL PYROPHOSPHATE SYNTHASE; COMPND 5 EC: 2.5.1.11; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32XA-LIC
KEYWDS TRANS-TYPE PRENYLTRANSFERASE, THERMOPHILIC, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR R.T.GUO,C.J.KUO,C.C.CHOU,T.P.KO,H.L.SHR,P.H.LIANG,A.H.-J.WANG
REVDAT 4 13-JUL-11 1V4I 1 VERSN REVDAT 3 24-FEB-09 1V4I 1 VERSN REVDAT 2 23-MAR-04 1V4I 1 TITLE REVDAT 1 02-MAR-04 1V4I 0
JRNL AUTH R.T.GUO,C.J.KUO,C.C.CHOU,T.P.KO,H.L.SHR,P.H.LIANG, JRNL AUTH 2 A.H.-J.WANG JRNL TITL CRYSTAL STRUCTURE OF OCTAPRENYL PYROPHOSPHATE SYNTHASE FROM JRNL TITL 2 HYPERTHERMOPHILIC THERMOTOGA MARITIMA AND MECHANISM OF JRNL TITL 3 PRODUCT CHAIN LENGTH DETERMINATION JRNL REF J.BIOL.CHEM. V. 279 4903 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14617622 JRNL DOI 10.1074/JBC.M310161200
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.T.GUO,T.P.KO,C.C.CHOU,H.L.SHR,H.M.CHU,Y.H.TSAI,P.H.LIANG, REMARK 1 AUTH 2 A.H.-J.WANG REMARK 1 TITL PRELIMINARY X-RAY DIFFRACTION ANALYSIS OF OCTAPRENYL REMARK 1 TITL 2 PYROPHOSPHATE SYNTHASE CRYSTALS FROM THERMOTOGA MARITIMA AND REMARK 1 TITL 3 ESCHERICHIA COLI REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN
REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 660 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2713 REMARK 3 BIN FREE R VALUE : 0.2828 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2211 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 0.90 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1V4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-03. REMARK 100 THE RCSB ID CODE IS RCSB006195.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14500 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 8.570 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 40.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: PDB ENTRY 1V4E REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA+HEPES, LITHIUM SULFATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 76.05300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 76.05300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 32.41750 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 76.05300 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 76.05300 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 32.41750 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 76.05300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 76.05300 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 32.41750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 76.05300 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 76.05300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 32.41750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 76.05300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 76.05300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 32.41750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 76.05300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 76.05300 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 32.41750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 76.05300 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 76.05300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 32.41750 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 76.05300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 76.05300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 32.41750 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -161.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 129.67000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 32070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 90590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -790.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 129.67000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 129.67000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 129.67000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 129.67000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1012 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1045 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1212 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 ASN A 7 REMARK 465 GLN A 8 REMARK 465 PHE A 288 REMARK 465 VAL A 289 REMARK 465 ASP A 290 REMARK 465 GLY A 291 REMARK 465 ILE A 292 REMARK 465 PHE A 293 REMARK 465 LYS A 294 REMARK 465 ILE A 295 REMARK 465 LYS A 296 REMARK 465 ILE A 297 REMARK 465 SER A 298 REMARK 465 SER A 299
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 10 -104.44 5.96 REMARK 500 TYR A 11 -71.26 -28.73 REMARK 500 PRO A 37 70.80 -68.99 REMARK 500 TYR A 39 -166.42 74.12 REMARK 500 ARG A 91 78.54 59.71 REMARK 500 LYS A 217 7.04 -69.24 REMARK 500 ALA A 228 61.10 -68.47 REMARK 500 TRP A 284 17.37 -64.95 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1028 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A1040 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A1042 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A1047 DISTANCE = 5.48 ANGSTROMS REMARK 525 HOH A1049 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1058 DISTANCE = 10.46 ANGSTROMS REMARK 525 HOH A1060 DISTANCE = 8.61 ANGSTROMS REMARK 525 HOH A1062 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1065 DISTANCE = 5.71 ANGSTROMS REMARK 525 HOH A1068 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1072 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1083 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH A1086 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A1089 DISTANCE = 7.48 ANGSTROMS REMARK 525 HOH A1092 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A1100 DISTANCE = 5.55 ANGSTROMS REMARK 525 HOH A1102 DISTANCE = 5.48 ANGSTROMS REMARK 525 HOH A1103 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH A1105 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A1109 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A1110 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A1119 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH A1126 DISTANCE = 9.24 ANGSTROMS REMARK 525 HOH A1134 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A1139 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1142 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1147 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A1148 DISTANCE = 11.05 ANGSTROMS REMARK 525 HOH A1149 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A1156 DISTANCE = 8.18 ANGSTROMS REMARK 525 HOH A1161 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A1162 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH A1180 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A1181 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A1182 DISTANCE = 9.40 ANGSTROMS REMARK 525 HOH A1183 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A1185 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A1186 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A1196 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH A1197 DISTANCE = 5.53 ANGSTROMS REMARK 525 HOH A1200 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH A1202 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A1207 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A1210 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH A1215 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A1223 DISTANCE = 5.78 ANGSTROMS REMARK 525 HOH A1225 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1226 DISTANCE = 8.70 ANGSTROMS REMARK 525 HOH A1227 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A1228 DISTANCE = 10.22 ANGSTROMS REMARK 525 HOH A1229 DISTANCE = 7.72 ANGSTROMS REMARK 525 HOH A1230 DISTANCE = 9.37 ANGSTROMS REMARK 525 HOH A1233 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH A1237 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1238 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH A1239 DISTANCE = 12.46 ANGSTROMS REMARK 525 HOH A1240 DISTANCE = 9.75 ANGSTROMS REMARK 525 HOH A1241 DISTANCE = 9.17 ANGSTROMS REMARK 525 HOH A1242 DISTANCE = 11.26 ANGSTROMS REMARK 525 HOH A1252 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH A1263 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A1264 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH A1268 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1273 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A1274 DISTANCE = 9.29 ANGSTROMS REMARK 525 HOH A1283 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH A1284 DISTANCE = 9.19 ANGSTROMS REMARK 525 HOH A1285 DISTANCE = 9.09 ANGSTROMS REMARK 525 HOH A1286 DISTANCE = 10.44 ANGSTROMS REMARK 525 HOH A1287 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A1288 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A1290 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH A1293 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A1294 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A1295 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A1296 DISTANCE = 9.01 ANGSTROMS REMARK 525 HOH A1297 DISTANCE = 8.99 ANGSTROMS REMARK 525 HOH A1298 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A1299 DISTANCE = 11.75 ANGSTROMS REMARK 525 HOH A1300 DISTANCE = 13.12 ANGSTROMS REMARK 525 HOH A1303 DISTANCE = 8.25 ANGSTROMS REMARK 525 HOH A1304 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1305 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1307 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A1308 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1310 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1313 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A1315 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A1316 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH A1317 DISTANCE = 9.99 ANGSTROMS REMARK 525 HOH A1318 DISTANCE = 10.06 ANGSTROMS REMARK 525 HOH A1319 DISTANCE = 8.14 ANGSTROMS REMARK 525 HOH A1320 DISTANCE = 8.84 ANGSTROMS REMARK 525 HOH A1325 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH A1326 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A1334 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A1335 DISTANCE = 11.01 ANGSTROMS REMARK 525 HOH A1336 DISTANCE = 13.81 ANGSTROMS REMARK 525 HOH A1337 DISTANCE = 9.31 ANGSTROMS REMARK 525 HOH A1338 DISTANCE = 7.89 ANGSTROMS REMARK 525 HOH A1339 DISTANCE = 5.45 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1006
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1V4E RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN WILD-TYPE REMARK 900 RELATED ID: 1V4H RELATED DB: PDB REMARK 900 THE SAME PROTEIN(F52A) REMARK 900 RELATED ID: 1V4J RELATED DB: PDB REMARK 900 THE SAME PROTEIN(V73Y) REMARK 900 RELATED ID: 1V4K RELATED DB: PDB REMARK 900 THE SAME PROTEIN(S77F)
DBREF 1V4I A 1 299 UNP Q9X1M1 Q9X1M1_THEMA 1 299
SEQADV 1V4I ALA A 132 UNP Q9X1M1 PHE 132 ENGINEERED
SEQRES 1 A 299 MET THR LYS ASN LYS LEU ASN GLN ASN SER TYR GLU LEU SEQRES 2 A 299 GLU LYS VAL LYS GLU ARG ILE GLU GLN ILE LEU SER GLN SEQRES 3 A 299 PHE PHE PRO GLU GLN ILE MET LYS ASP LEU PRO LEU TYR SEQRES 4 A 299 GLY LYS MET LEU ARG VAL ARG LEU SER ILE LEU SER PHE SEQRES 5 A 299 LYS ASN ARG GLY VAL GLU ILE GLY GLU ASP ALA ILE SER SEQRES 6 A 299 SER LEU ALA ALA LEU GLU LEU VAL HIS LEU ALA SER LEU SEQRES 7 A 299 LEU HIS ASP ASP VAL ILE ASP GLY ALA ARG PHE ARG ARG SEQRES 8 A 299 GLY LYS GLU THR ILE ASN PHE MET TYR GLY ASP LYS ALA SEQRES 9 A 299 ALA VAL ALA ALA GLY ASP LEU VAL LEU VAL SER ALA PHE SEQRES 10 A 299 HIS THR VAL GLU GLU ILE GLY ASN ASN LYS LEU ARG ARG SEQRES 11 A 299 ALA ALA LEU ASN VAL ILE GLY LYS MET SER GLU ALA GLU SEQRES 12 A 299 LEU ILE GLU GLN LEU SER ARG TYR LYS PRO ILE THR LYS SEQRES 13 A 299 GLU GLU TYR LEU ARG ILE VAL GLU GLY LYS SER GLY ALA SEQRES 14 A 299 LEU PHE GLY LEU ALA LEU GLN LEU PRO ALA LEU LEU GLU SEQRES 15 A 299 GLY GLU LEU GLY GLU ASP LEU TYR ASN LEU GLY VAL THR SEQRES 16 A 299 ILE GLY THR ILE TYR GLN MET PHE ASP ASP ILE MET ASP SEQRES 17 A 299 PHE ALA GLY MET GLU LYS ILE GLY LYS ASP GLY PHE LEU SEQRES 18 A 299 ASP LEU LYS ASN GLY VAL ALA SER PHE PRO LEU VAL THR SEQRES 19 A 299 ALA MET GLU LYS PHE PRO GLU ALA ARG GLN MET PHE GLU SEQRES 20 A 299 ASN ARG ASP TRP SER GLY LEU MET SER PHE MET ARG GLU SEQRES 21 A 299 LYS GLY ILE LEU LYS GLU CYS GLU GLU THR LEU LYS VAL SEQRES 22 A 299 LEU VAL LYS ASN VAL ILE ILE GLU ASN SER TRP LEU ARG SEQRES 23 A 299 ASP PHE VAL ASP GLY ILE PHE LYS ILE LYS ILE SER SER
HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 A1006 5
HETNAM SO4 SULFATE ION
FORMUL 2 SO4 6(O4 S 2-) FORMUL 8 HOH *333(H2 O)
HELIX 1 1 ASN A 9 PHE A 28 1 20 HELIX 2 2 PRO A 29 LYS A 34 1 6 HELIX 3 3 MET A 42 ARG A 55 1 14 HELIX 4 4 GLY A 60 GLY A 86 1 27 HELIX 5 5 THR A 95 GLY A 101 1 7 HELIX 6 6 GLY A 101 GLY A 124 1 24 HELIX 7 7 ASN A 125 SER A 149 1 25 HELIX 8 8 THR A 155 SER A 167 1 13 HELIX 9 9 SER A 167 GLY A 183 1 17 HELIX 10 10 GLY A 186 GLY A 211 1 26 HELIX 11 11 SER A 229 PHE A 239 1 11 HELIX 12 12 PHE A 239 ARG A 249 1 11 HELIX 13 13 ASP A 250 LYS A 261 1 12 HELIX 14 14 GLY A 262 ASN A 282 1 21 HELIX 15 15 SER A 283 ARG A 286 5 4
SITE 1 AC1 3 ARG A 90 ARG A 91 LYS A 224 SITE 1 AC2 5 GLY A 60 GLU A 61 ASP A 62 HOH A1093 SITE 2 AC2 5 HOH A1213 SITE 1 AC3 6 GLY A 101 ASP A 102 ARG A 150 HOH A1097 SITE 2 AC3 6 HOH A1165 HOH A1166 SITE 1 AC4 1 GLN A 147 SITE 1 AC5 1 ARG A 88 SITE 1 AC6 5 GLY A 40 LYS A 41 HIS A 74 ARG A 91 SITE 2 AC6 5 HOH A1254
CRYST1 152.106 152.106 64.835 90.00 90.00 90.00 I 4 2 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006574 0.000000 0.000000 0.00000
SCALE2 0.000000 0.006574 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015424 0.00000