10 20 30 40 50 60 70 80 1V35 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 28-OCT-03 1V35
TITLE CRYSTAL STRUCTURE OF EOYL-ACP REDUCTASE WITH NADH
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-ACP REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 96-424; COMPND 5 EC: 1.3.1.9; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 5833; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+)
KEYWDS FABI, NADH, ENOYL-ACP REDUCTASE, P.FALCIPARUM, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR P.L.SWARNAMUKHI,M.KAPOOR,N.SUROLIA,A.SUROLIA,K.SUGUNA
REVDAT 3 13-JUL-11 1V35 1 VERSN REVDAT 2 24-FEB-09 1V35 1 VERSN REVDAT 1 28-SEP-04 1V35 0
JRNL AUTH L.S.PIDUGU,M.KAPOOR,N.SUROLIA,A.SUROLIA,K.SUGUNA JRNL TITL STRUCTURAL BASIS FOR THE VARIATION IN TRICLOSAN AFFINITY TO JRNL TITL 2 ENOYL REDUCTASES. JRNL REF J.MOL.BIOL. V. 343 147 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15381426 JRNL DOI 10.1016/J.JMB.2004.08.033
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.KAPOOR,P.L.SWARNAMUKHI,N.SUROLIA,K.SUGUNA,A.SUROLIA REMARK 1 TITL KINETIC AND STRUCTURAL ANALYSIS OF THE INCREASED AFFINITY OF REMARK 1 TITL 2 ENOYL-ACP (ACYL-CARRIER PROTEIN) REDUCTASE FOR TRICLOSAN IN REMARK 1 TITL 3 THE PRESENCE OF NAD+ REMARK 1 REF BIOCHEM.J. V. 381 725 2004 REMARK 1 REFN ISSN 0264-6021 REMARK 1 PMID 15125687 REMARK 1 DOI 10.1042/BJ20040228
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 336140.390 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 25266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1479 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3724 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 247 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4320 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.73000 REMARK 3 B22 (A**2) : 1.73000 REMARK 3 B33 (A**2) : -3.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.028 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.09 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.550 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.060 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.460 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.930 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 59.90 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NAD1.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : &_1_PARAMETER_INFILE_5 REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NAD1.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : &_1_TOPOLOGY_INFILE_5 REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1V35 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-OCT-03. REMARK 100 THE RCSB ID CODE IS RCSB006147.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : OSMIC MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26266 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1ENO REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, AMMONIUM SULPHATE, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298.0K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.87600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 66.65750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 66.65750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.81400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 66.65750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 66.65750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.93800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 66.65750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.65750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.81400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 66.65750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.65750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.93800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.87600 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE OTHER TWO SUBUNITS OF THE FUNCTIONAL TETRAMER ARE REMARK 300 GENERATED BY A-Y,B-X,C/2-Z
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 21280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 133.31500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 133.31500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.87600
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 325 REMARK 465 LEU A 326 REMARK 465 ASN A 327 REMARK 465 ASN A 328 REMARK 465 THR A 329 REMARK 465 TYR A 330 REMARK 465 GLU A 331 REMARK 465 ASN A 332 REMARK 465 ASN A 333 REMARK 465 THR A 334 REMARK 465 ASN A 335 REMARK 465 GLN A 336 REMARK 465 ASN A 337 REMARK 465 LYS A 338 REMARK 465 ASN A 339 REMARK 465 ARG A 340 REMARK 465 ASN A 341 REMARK 465 ARG A 342 REMARK 465 HIS A 343 REMARK 465 ASP A 344 REMARK 465 VAL A 345 REMARK 465 HIS A 346 REMARK 465 ASN A 347 REMARK 465 ILE A 348 REMARK 465 MET A 349 REMARK 465 ASN A 350 REMARK 465 ASN A 351 REMARK 465 SER A 352 REMARK 465 GLY A 353 REMARK 465 GLU A 354 REMARK 465 LYS A 355 REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 LYS A 358 REMARK 465 LYS A 359 REMARK 465 ILE A 360 REMARK 465 SER A 361 REMARK 465 ALA A 362 REMARK 465 SER A 363 REMARK 465 GLN A 364 REMARK 465 ASN A 365 REMARK 465 TYR A 366 REMARK 465 LYS B 325 REMARK 465 LEU B 326 REMARK 465 ASN B 327 REMARK 465 ASN B 328 REMARK 465 THR B 329 REMARK 465 TYR B 330 REMARK 465 GLU B 331 REMARK 465 ASN B 332 REMARK 465 ASN B 333 REMARK 465 THR B 334 REMARK 465 ASN B 335 REMARK 465 GLN B 336 REMARK 465 ASN B 337 REMARK 465 LYS B 338 REMARK 465 ASN B 339 REMARK 465 ARG B 340 REMARK 465 ASN B 341 REMARK 465 ARG B 342 REMARK 465 HIS B 343 REMARK 465 ASP B 344 REMARK 465 VAL B 345 REMARK 465 HIS B 346 REMARK 465 ASN B 347 REMARK 465 ILE B 348 REMARK 465 MET B 349 REMARK 465 ASN B 350 REMARK 465 ASN B 351 REMARK 465 SER B 352 REMARK 465 GLY B 353 REMARK 465 GLU B 354 REMARK 465 LYS B 355 REMARK 465 GLU B 356 REMARK 465 GLU B 357 REMARK 465 LYS B 358 REMARK 465 LYS B 359 REMARK 465 ILE B 360 REMARK 465 SER B 361 REMARK 465 ALA B 362 REMARK 465 SER B 363 REMARK 465 GLN B 364 REMARK 465 ASN B 365 REMARK 465 TYR B 366
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 96 CG OD1 REMARK 470 GLU A 97 CB CG CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 ASP A 154 CG OD1 OD2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 ASP A 156 CB CG OD1 OD2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 ASN A 160 CG OD1 REMARK 470 GLU A 179 CB CG CD OE1 OE2 REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 ASN A 183 CG OD1 REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 ARG A 186 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN A 188 CG OD1 REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 GLN A 223 CG CD OE1 NE2 REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 ASN A 302 CG OD1 REMARK 470 ARG A 318 CB CG CD NE CZ NH1 NH2 REMARK 470 ILE A 323 CG1 CG2 CD1 REMARK 470 ASN A 324 CG OD1 REMARK 470 THR A 367 CB OG1 CG2 REMARK 470 GLU A 374 CG CD OE1 OE2 REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 ARG A 401 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 96 CG OD1 REMARK 470 GLU B 97 CB CG CD OE1 OE2 REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 LYS B 140 CG CD CE NZ REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 ASN B 149 CG OD1 REMARK 470 ASP B 154 CG OD1 OD2 REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 ASP B 156 CB CG OD1 OD2 REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 GLU B 179 CG CD OE1 OE2 REMARK 470 LYS B 182 CG CD CE NZ REMARK 470 ASN B 183 CG OD1 REMARK 470 ASN B 188 CG OD1 REMARK 470 MET B 189 CB CG SD CE REMARK 470 GLN B 191 CG CD OE1 NE2 REMARK 470 GLN B 204 CG CD OE1 NE2 REMARK 470 LYS B 232 CG CD CE NZ REMARK 470 ASN B 302 CG OD1 REMARK 470 ARG B 318 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 374 CG CD OE1 OE2 REMARK 470 ARG B 401 CG CD NE CZ NH1 NH2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 ILE A 152 CD1 ILE A 152 8666 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 97 28.88 103.30 REMARK 500 ASP A 154 -153.38 49.50 REMARK 500 LYS A 155 -116.38 -64.08 REMARK 500 ARG A 318 -73.69 -34.79 REMARK 500 ALA A 319 -85.88 -56.07 REMARK 500 ALA A 320 -59.18 -12.59 REMARK 500 ARG A 404 -43.12 -24.88 REMARK 500 ASP A 414 26.98 -146.69 REMARK 500 PHE A 421 -69.10 -121.57 REMARK 500 GLU B 97 13.84 87.04 REMARK 500 ASP B 107 -162.41 -169.72 REMARK 500 ASP B 154 161.60 66.07 REMARK 500 LYS B 155 114.10 -38.79 REMARK 500 ASP B 156 -26.75 49.37 REMARK 500 ASN B 210 12.84 -142.68 REMARK 500 ARG B 404 -39.95 -37.63 REMARK 500 ASP B 414 30.71 -145.76 REMARK 500 PRO B 423 -156.84 -65.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PRO A 275 46.6 L L OUTSIDE RANGE REMARK 500 PRO B 275 13.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 575 DISTANCE = 8.88 ANGSTROMS REMARK 525 HOH B 679 DISTANCE = 6.09 ANGSTROMS
REMARK 750 REMARK 750 TURN REMARK 750 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI B 601
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UH5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EOYL-ACP REDUCTASE WITH TRICLOSAN AT REMARK 900 2.2 ANGSTROMS
DBREF 1V35 A 96 424 UNP Q6LFB9 Q6LFB9_PLAF7 96 424 DBREF 1V35 B 96 424 UNP Q6LFB9 Q6LFB9_PLAF7 96 424
SEQRES 1 A 329 ASN GLU ASP ILE CYS PHE ILE ALA GLY ILE GLY ASP THR SEQRES 2 A 329 ASN GLY TYR GLY TRP GLY ILE ALA LYS GLU LEU SER LYS SEQRES 3 A 329 ARG ASN VAL LYS ILE ILE PHE GLY ILE TRP PRO PRO VAL SEQRES 4 A 329 TYR ASN ILE PHE MET LYS ASN TYR LYS ASN GLY LYS PHE SEQRES 5 A 329 ASP ASN ASP MET ILE ILE ASP LYS ASP LYS LYS MET ASN SEQRES 6 A 329 ILE LEU ASP MET LEU PRO PHE ASP ALA SER PHE ASP THR SEQRES 7 A 329 ALA ASN ASP ILE ASP GLU GLU THR LYS ASN ASN LYS ARG SEQRES 8 A 329 TYR ASN MET LEU GLN ASN TYR THR ILE GLU ASP VAL ALA SEQRES 9 A 329 ASN LEU ILE HIS GLN LYS TYR GLY LYS ILE ASN MET LEU SEQRES 10 A 329 VAL HIS SER LEU ALA ASN ALA LYS GLU VAL GLN LYS ASP SEQRES 11 A 329 LEU LEU ASN THR SER ARG LYS GLY TYR LEU ASP ALA LEU SEQRES 12 A 329 SER LYS SER SER TYR SER LEU ILE SER LEU CYS LYS TYR SEQRES 13 A 329 PHE VAL ASN ILE MET LYS PRO GLN SER SER ILE ILE SER SEQRES 14 A 329 LEU THR TYR HIS ALA SER GLN LYS VAL VAL PRO GLY TYR SEQRES 15 A 329 GLY GLY GLY MET SER SER ALA LYS ALA ALA LEU GLU SER SEQRES 16 A 329 ASP THR ARG VAL LEU ALA TYR HIS LEU GLY ARG ASN TYR SEQRES 17 A 329 ASN ILE ARG ILE ASN THR ILE SER ALA GLY PRO LEU LYS SEQRES 18 A 329 SER ARG ALA ALA THR ALA ILE ASN LYS LEU ASN ASN THR SEQRES 19 A 329 TYR GLU ASN ASN THR ASN GLN ASN LYS ASN ARG ASN ARG SEQRES 20 A 329 HIS ASP VAL HIS ASN ILE MET ASN ASN SER GLY GLU LYS SEQRES 21 A 329 GLU GLU LYS LYS ILE SER ALA SER GLN ASN TYR THR PHE SEQRES 22 A 329 ILE ASP TYR ALA ILE GLU TYR SER GLU LYS TYR ALA PRO SEQRES 23 A 329 LEU ARG GLN LYS LEU LEU SER THR ASP ILE GLY SER VAL SEQRES 24 A 329 ALA SER PHE LEU LEU SER ARG GLU SER ARG ALA ILE THR SEQRES 25 A 329 GLY GLN THR ILE TYR VAL ASP ASN GLY LEU ASN ILE MET SEQRES 26 A 329 PHE LEU PRO ASP SEQRES 1 B 329 ASN GLU ASP ILE CYS PHE ILE ALA GLY ILE GLY ASP THR SEQRES 2 B 329 ASN GLY TYR GLY TRP GLY ILE ALA LYS GLU LEU SER LYS SEQRES 3 B 329 ARG ASN VAL LYS ILE ILE PHE GLY ILE TRP PRO PRO VAL SEQRES 4 B 329 TYR ASN ILE PHE MET LYS ASN TYR LYS ASN GLY LYS PHE SEQRES 5 B 329 ASP ASN ASP MET ILE ILE ASP LYS ASP LYS LYS MET ASN SEQRES 6 B 329 ILE LEU ASP MET LEU PRO PHE ASP ALA SER PHE ASP THR SEQRES 7 B 329 ALA ASN ASP ILE ASP GLU GLU THR LYS ASN ASN LYS ARG SEQRES 8 B 329 TYR ASN MET LEU GLN ASN TYR THR ILE GLU ASP VAL ALA SEQRES 9 B 329 ASN LEU ILE HIS GLN LYS TYR GLY LYS ILE ASN MET LEU SEQRES 10 B 329 VAL HIS SER LEU ALA ASN ALA LYS GLU VAL GLN LYS ASP SEQRES 11 B 329 LEU LEU ASN THR SER ARG LYS GLY TYR LEU ASP ALA LEU SEQRES 12 B 329 SER LYS SER SER TYR SER LEU ILE SER LEU CYS LYS TYR SEQRES 13 B 329 PHE VAL ASN ILE MET LYS PRO GLN SER SER ILE ILE SER SEQRES 14 B 329 LEU THR TYR HIS ALA SER GLN LYS VAL VAL PRO GLY TYR SEQRES 15 B 329 GLY GLY GLY MET SER SER ALA LYS ALA ALA LEU GLU SER SEQRES 16 B 329 ASP THR ARG VAL LEU ALA TYR HIS LEU GLY ARG ASN TYR SEQRES 17 B 329 ASN ILE ARG ILE ASN THR ILE SER ALA GLY PRO LEU LYS SEQRES 18 B 329 SER ARG ALA ALA THR ALA ILE ASN LYS LEU ASN ASN THR SEQRES 19 B 329 TYR GLU ASN ASN THR ASN GLN ASN LYS ASN ARG ASN ARG SEQRES 20 B 329 HIS ASP VAL HIS ASN ILE MET ASN ASN SER GLY GLU LYS SEQRES 21 B 329 GLU GLU LYS LYS ILE SER ALA SER GLN ASN TYR THR PHE SEQRES 22 B 329 ILE ASP TYR ALA ILE GLU TYR SER GLU LYS TYR ALA PRO SEQRES 23 B 329 LEU ARG GLN LYS LEU LEU SER THR ASP ILE GLY SER VAL SEQRES 24 B 329 ALA SER PHE LEU LEU SER ARG GLU SER ARG ALA ILE THR SEQRES 25 B 329 GLY GLN THR ILE TYR VAL ASP ASN GLY LEU ASN ILE MET SEQRES 26 B 329 PHE LEU PRO ASP
HET NAI A 501 44 HET NAI B 601 44
HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
HETSYN NAI NADH
FORMUL 3 NAI 2(C21 H29 N7 O14 P2) FORMUL 5 HOH *178(H2 O)
HELIX 1 1 GLY A 110 ARG A 122 1 13 HELIX 2 2 TRP A 131 ASN A 144 1 14 HELIX 3 3 PHE A 147 ASP A 150 5 4 HELIX 4 4 THR A 173 ILE A 177 5 5 HELIX 5 5 ASP A 178 ASN A 183 1 6 HELIX 6 6 ASN A 184 MET A 189 1 6 HELIX 7 7 THR A 194 GLY A 207 1 14 HELIX 8 8 ASP A 225 THR A 229 5 5 HELIX 9 9 SER A 230 SER A 242 1 13 HELIX 10 10 SER A 242 VAL A 253 1 12 HELIX 11 11 TYR A 267 GLN A 271 5 5 HELIX 12 12 GLY A 280 ASN A 304 1 25 HELIX 13 13 ALA A 319 ILE A 323 5 5 HELIX 14 14 THR A 367 ALA A 380 1 14 HELIX 15 15 LEU A 387 SER A 400 1 14 HELIX 16 16 ARG A 401 ARG A 404 5 4 HELIX 17 17 GLY A 416 MET A 420 5 5 HELIX 18 18 GLY B 110 ARG B 122 1 13 HELIX 19 19 TRP B 131 PRO B 133 5 3 HELIX 20 20 VAL B 134 ASN B 144 1 11 HELIX 21 21 ASP B 148 ILE B 152 5 5 HELIX 22 22 THR B 173 ILE B 177 5 5 HELIX 23 23 ASP B 178 ASN B 184 1 7 HELIX 24 24 THR B 194 GLY B 207 1 14 HELIX 25 25 ASP B 225 THR B 229 5 5 HELIX 26 26 SER B 230 SER B 242 1 13 HELIX 27 27 SER B 242 VAL B 253 1 12 HELIX 28 28 TYR B 267 GLN B 271 5 5 HELIX 29 29 GLY B 280 ASN B 304 1 25 HELIX 30 30 SER B 317 ALA B 322 1 6 HELIX 31 31 THR B 367 ALA B 380 1 14 HELIX 32 32 LEU B 387 SER B 400 1 14 HELIX 33 33 ARG B 401 ARG B 404 5 4 HELIX 34 34 GLY B 416 MET B 420 5 5
SHEET 1 A 7 ILE A 161 PRO A 166 0 SHEET 2 A 7 LYS A 125 ILE A 130 1 N ILE A 130 O LEU A 165 SHEET 3 A 7 ILE A 99 ALA A 103 1 N ILE A 102 O ILE A 127 SHEET 4 A 7 ILE A 209 HIS A 214 1 O VAL A 213 N ALA A 103 SHEET 5 A 7 MET A 256 THR A 266 1 O ILE A 263 N HIS A 214 SHEET 6 A 7 ARG A 306 ALA A 312 1 O ILE A 310 N SER A 264 SHEET 7 A 7 THR A 410 VAL A 413 1 O ILE A 411 N THR A 309 SHEET 1 B 2 ILE A 152 ILE A 153 0 SHEET 2 B 2 LYS A 157 LYS A 158 -1 O LYS A 157 N ILE A 153 SHEET 1 C 7 ILE B 161 PRO B 166 0 SHEET 2 C 7 LYS B 125 ILE B 130 1 N ILE B 130 O LEU B 165 SHEET 3 C 7 ILE B 99 ALA B 103 1 N ILE B 102 O ILE B 127 SHEET 4 C 7 ILE B 209 HIS B 214 1 O VAL B 213 N ALA B 103 SHEET 5 C 7 MET B 256 THR B 266 1 O ILE B 263 N HIS B 214 SHEET 6 C 7 ARG B 306 ALA B 312 1 O ILE B 310 N THR B 266 SHEET 7 C 7 THR B 410 VAL B 413 1 O ILE B 411 N THR B 309
SITE 1 AC1 24 GLY A 104 ILE A 105 GLY A 106 GLY A 110 SITE 2 AC1 24 TYR A 111 TRP A 131 PHE A 167 ASP A 168 SITE 3 AC1 24 ALA A 169 LEU A 216 ALA A 217 ASN A 218 SITE 4 AC1 24 LYS A 240 LEU A 265 THR A 266 TYR A 267 SITE 5 AC1 24 LYS A 285 ALA A 312 LEU A 315 SER A 317 SITE 6 AC1 24 ALA A 319 ALA A 320 HOH A 565 HOH A 572 SITE 1 AC2 26 GLY B 104 ILE B 105 GLY B 106 GLY B 110 SITE 2 AC2 26 TYR B 111 TRP B 131 PHE B 167 ASP B 168 SITE 3 AC2 26 ALA B 169 SER B 170 SER B 215 LEU B 216 SITE 4 AC2 26 ALA B 217 ASN B 218 LEU B 265 THR B 266 SITE 5 AC2 26 TYR B 267 LYS B 285 PRO B 314 LEU B 315 SITE 6 AC2 26 SER B 317 ALA B 319 HOH B 620 HOH B 622 SITE 7 AC2 26 HOH B 635 HOH B 678
CRYST1 133.315 133.315 83.752 90.00 90.00 90.00 P 43 21 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007501 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007501 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011940 0.00000