10 20 30 40 50 60 70 80 1V0G - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 29-MAR-04 1V0G
TITLE THEORETICAL MODEL STRUCTURE OF DNAA A, DNA BINDING PROTEIN TITLE 2 FROM RALSTONIA SOLANACEARUM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNAA
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA SOLANACEARUM; SOURCE 3 STRAIN: GMI1000
KEYWDS DNA BINDING PROTEIN, ATP BINDING, DNAA FAMILY
EXPDTA THEORETICAL MODEL
AUTHOR S.MAHANTA,C.BARUAH,J.DEKA,A.K.BURAGOHAIN
REVDAT 1 31-MAR-04 1V0G 0
JRNL AUTH S.MAHANTA,C.BARUAH,J.DEKA,A.K.BURAGOHAIN JRNL TITL THEORETICAL STRUCTURE OF DNAA,A DNA BINDING JRNL TITL 2 PROTEIN OF RALSTONIA SOLANACEARUM JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.SALANOUBAT,S.GENIN,F.ARTIGUENAVE,J.GOUZY, REMARK 1 AUTH 2 S.MANGENOT,M.ARLAT,A.BILLAULT,P.BROTTIER,J.C.CAMUS, REMARK 1 AUTH 3 L.CATTOLICO,M.CHANDLER,N.CHOSINE,C.CLAUDE-RENARD, REMARK 1 AUTH 4 S.CUNNAC,N.DEMANGE,C.GASPIN,M.LAVIE,A.MOISAN, REMARK 1 AUTH 5 C.ROBERT,W.SAURIN,T.SCHIEX,P.SIGUIER,P.THEBAULT, REMARK 1 AUTH 6 M.WHALEN,P.WINCKER,M.LEVY,J.WEISSENBACH,C.A.BOUCHER REMARK 1 TITL GENOME SEQUENCE OF THE PLANT PATHOGEN RALSTONIA REMARK 1 TITL 2 SOLANACEARUM REMARK 1 REF NATURE V. 415 497 2002 REMARK 1 REFN ASTM NATUAS UK ISSN 0028-0836
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1V0G COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 29-MAR-2004. REMARK 100 THE EBI ID CODE IS EBI-14875.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 400 REMARK 400 COMPOUND REMARK 400 DNAA HAS AN IMPORTANT ROLE IN THE INITIATION AND REGULATION REMARK 400 OF CHROMOSOMAL REPLICATION AND BINDS TO ATP AND TO ACIDIC REMARK 400 PHOSPHOLIPIDS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 6 C - N - CA ANGL. DEV. = 24.7 DEGREES REMARK 500 LEU A 79 CA - CB - CG ANGL. DEV. =-27.3 DEGREES REMARK 500 GLN A 153 C - N - CA ANGL. DEV. = 25.5 DEGREES REMARK 500 THR A 325 C - N - CA ANGL. DEV. = 29.2 DEGREES REMARK 500 VAL A 370 N - CA - CB ANGL. DEV. =-34.5 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 46 168.96 55.49 REMARK 500 ALA A 65 -62.65 143.12 REMARK 500 TRP A 69 -170.52 128.74 REMARK 500 GLN A 91 -62.53 44.20 REMARK 500 THR A 106 -160.14 149.15 REMARK 500 ALA A 109 108.89 135.94 REMARK 500 ALA A 131 129.11 58.19 REMARK 500 VAL A 144 156.60 122.96 REMARK 500 GLN A 153 -24.78 13.33 REMARK 500 HIS A 182 -63.04 79.12 REMARK 500 THR A 331 115.85 22.03 REMARK 500 ARG A 336 -110.15 164.79 REMARK 500 PHE A 341 137.27 62.53 REMARK 500 VAL A 372 -51.00 115.12 REMARK 500 VAL A 431 -134.33 4.88 REMARK 500 GLN A 435 156.55 111.01 REMARK 500 ASP A 440 133.29 40.56
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L8Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DNA REPLICATION REMARK 900 INITIATION FACTOR REMARK 900 RELATED ID: 1J1V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DNAA DOMAIN IV COMPLEXED REMARK 900 WITH DNAABOX DNA
DBREF 1V0G A 1 522 UNP Q8XTV4 DNAA_RALSO 1 522
SEQRES 1 A 522 MET GLN ASP PHE TRP HIS ALA ALA SER ALA GLN LEU GLU SEQRES 2 A 522 SER GLU LEU THR PRO GLN GLN PHE LYS THR TRP ILE LYS SEQRES 3 A 522 PRO LEU THR PRO LEU SER PHE ASP GLU GLN ALA CYS MET SEQRES 4 A 522 LEU ARG ILE ALA ALA PRO ASN ARG PHE LYS LEU ASP TRP SEQRES 5 A 522 VAL LYS SER GLN PHE SER GLY ARG ILE GLN SER LEU ALA SEQRES 6 A 522 CYS ASP TYR TRP GLU MET GLN VAL ASP VAL GLN PHE VAL SEQRES 7 A 522 LEU ASP PRO THR ALA GLY GLN ARG GLN ALA ALA MET GLN SEQRES 8 A 522 PRO ALA LEU ALA PRO MET PRO MET GLN PRO LEU ALA ALA SEQRES 9 A 522 GLN THR MET GLN ALA GLN ALA VAL PRO ARG GLU ALA PRO SEQRES 10 A 522 ALA ARG PRO THR MET ALA PRO TYR ARG GLU THR PRO MET SEQRES 11 A 522 ALA THR ALA ALA HIS ALA ALA ALA ASP ILE ASP VAL PRO SEQRES 12 A 522 VAL MET ASP ALA ALA GLU ALA SER THR GLN SER TYR ARG SEQRES 13 A 522 VAL PRO ALA PRO ALA ALA PRO ALA VAL MET GLY GLY LEU SEQRES 14 A 522 SER ALA PRO PRO ALA ALA PRO VAL ASP ASP THR VAL HIS SEQRES 15 A 522 GLU ARG SER ARG LEU ASN PRO ILE LEU THR PHE ASP ASN SEQRES 16 A 522 LEU VAL THR GLY LYS ALA ASN GLN LEU ALA ARG ALA ALA SEQRES 17 A 522 ALA VAL GLN VAL ALA ASN ASN PRO GLY LYS SER TYR ASN SEQRES 18 A 522 PRO LEU TYR LEU TYR GLY GLY VAL GLY LEU GLY LYS THR SEQRES 19 A 522 HIS LEU ILE HIS ALA ILE GLY ASN PHE MET LEU MET GLU SEQRES 20 A 522 ASN PRO ARG ALA ARG ILE ARG TYR ILE HIS ALA GLU GLN SEQRES 21 A 522 TYR VAL SER ASP VAL VAL LYS ALA TYR GLN ARG LYS ALA SEQRES 22 A 522 PHE ASP ASP PHE LYS ARG TYR TYR HIS SER LEU ASP LEU SEQRES 23 A 522 LEU LEU ILE ASP ASP ILE GLN PHE PHE SER GLY LYS ASN SEQRES 24 A 522 ARG THR GLN GLU GLU PHE PHE TYR ALA PHE GLU ALA LEU SEQRES 25 A 522 ILE ALA ASN ARG ALA GLN VAL ILE ILE THR SER ASP THR SEQRES 26 A 522 TYR PRO LYS GLU ILE THR GLY ILE ASP ASP ARG LEU ILE SEQRES 27 A 522 SER ARG PHE ASP SER GLY LEU THR VAL ALA ILE GLU PRO SEQRES 28 A 522 PRO GLU LEU GLU MET ARG VAL ALA ILE LEU MET LYS LYS SEQRES 29 A 522 ALA GLN ALA GLU ASN VAL THR VAL PRO GLU GLU VAL ALA SEQRES 30 A 522 PHE PHE VAL ALA LYS HIS LEU ARG SER ASN VAL ARG GLU SEQRES 31 A 522 LEU GLU GLY ALA LEU ARG LYS ILE LEU ALA TYR SER ASN SEQRES 32 A 522 PHE HIS GLY LYS GLU ILE THR ILE GLU VAL THR ARG GLU SEQRES 33 A 522 ALA LEU LYS ASP LEU LEU THR VAL GLN ASN ARG GLN ILE SEQRES 34 A 522 SER VAL GLU ASN ILE GLN LYS THR CYS ALA ASP PHE TYR SEQRES 35 A 522 ASN ILE LYS VAL ALA ASP MET TYR SER LYS LYS ARG PRO SEQRES 36 A 522 ALA ASN ILE ALA ARG PRO ARG GLN ILE ALA MET TYR LEU SEQRES 37 A 522 ALA LYS GLU LEU THR GLN LYS SER LEU PRO GLU ILE GLY SEQRES 38 A 522 GLU LEU PHE GLY GLY ARG ASP HIS THR THR VAL LEU HIS SEQRES 39 A 522 ALA VAL ARG LYS ILE ALA ASP GLU ARG SER LYS ASP ALA SEQRES 40 A 522 GLN LEU ASN HIS GLU LEU HIS VAL LEU GLU GLN THR LEU SEQRES 41 A 522 LYS GLY
HELIX 1 1 PRO A 27 SER A 32 1 6 HELIX 2 2 PRO A 96 GLN A 100 5 5 HELIX 3 3 MET A 122 GLU A 127 1 6 HELIX 4 4 HIS A 182 LEU A 187 1 6 HELIX 5 5 LEU A 187 VAL A 197 1 11 HELIX 6 6 LEU A 204 ALA A 208 5 5 HELIX 7 7 SER A 219 GLY A 227 1 9 HELIX 8 8 GLY A 230 LEU A 245 1 16 HELIX 9 9 ASP A 275 LEU A 288 1 14 HELIX 10 10 GLN A 293 GLY A 297 5 5 HELIX 11 11 LYS A 298 ARG A 316 1 19 HELIX 12 12 PHE A 341 LEU A 345 5 5 HELIX 13 13 ILE A 349 VAL A 358 1 10 HELIX 14 14 PHE A 379 ASN A 387 1 9 HELIX 15 15 ALA A 394 SER A 402 1 9 HELIX 16 16 LYS A 407 THR A 414 1 8 HELIX 17 17 ILE A 458 THR A 473 1 16 HELIX 18 18 THR A 491 LEU A 513 1 23
SHEET 1 AA 2 GLN A 260 VAL A 262 0 SHEET 2 AA 2 LYS A 272 PHE A 274 -1 O LYS A 272 N VAL A 262
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000