10 20 30 40 50 60 70 80 1UVZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 27-JAN-04 1UVZ
TITLE STRUCTURE OF HUMAN THIOREDOXIN 2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: RESIDUES 60-166; COMPND 5 SYNONYM: HUMAN THIOREDOXIN 2; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15 (PREP4); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30; SOURCE 11 OTHER_DETAILS: SYNTHETIC GENE
KEYWDS THIOREDOXIN, MITOCHONDRION, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR A.SMEETS,C.EVRARD,J.P.DECLERCQ
REVDAT 4 13-JUL-11 1UVZ 1 VERSN REVDAT 3 24-FEB-09 1UVZ 1 VERSN REVDAT 2 05-OCT-05 1UVZ 1 JRNL REVDAT 1 16-JUN-05 1UVZ 0
JRNL AUTH A.SMEETS,C.EVRARD,M.LANDTMETERS,C.MARCHAND,B.KNOOPS, JRNL AUTH 2 J.P.DECLERCQ JRNL TITL CRYSTAL STRUCTURES OF OXIDIZED AND REDUCED FORMS OF HUMAN JRNL TITL 2 MITOCHONDRIAL THIOREDOXIN 2. JRNL REF PROTEIN SCI. V. 14 2610 2005 JRNL REFN ISSN 0961-8368 JRNL PMID 16195549 JRNL DOI 10.1110/PS.051632905
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.E.DAMDIMOPOULOS,A.MIRANDA-VIZUETE,M.PELTO-HUIKKOS, REMARK 1 AUTH 2 J.A.GUSTAFSSON,G.SPYROU REMARK 1 TITL HUMAN MITOCHONDRIAL THIOREDOXIN REMARK 1 REF J.BIOL.CHEM. V. 277 33249 2002 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 12080052 REMARK 1 DOI 10.1074/JBC.M203036200
REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 44625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2395 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2683 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5074 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 525 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.21000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 1.09000 REMARK 3 B12 (A**2) : 0.86000 REMARK 3 B13 (A**2) : 0.09000 REMARK 3 B23 (A**2) : -1.11000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.578 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5167 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4694 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6993 ; 2.017 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11010 ; 1.345 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 648 ; 7.557 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 806 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5718 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 912 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1121 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5689 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3053 ; 0.092 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 504 ; 0.247 ; 0.400 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.163 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 103 ; 0.216 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 48 ; 0.239 ; 0.400 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3254 ; 0.991 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5286 ; 1.699 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1913 ; 2.828 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1707 ; 4.445 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 41.6370 14.5370 53.0480 REMARK 3 T TENSOR REMARK 3 T11: 0.0737 T22: 0.1065 REMARK 3 T33: 0.0713 T12: -0.0378 REMARK 3 T13: 0.0080 T23: 0.0588 REMARK 3 L TENSOR REMARK 3 L11: 1.2658 L22: 1.8476 REMARK 3 L33: 4.8480 L12: -0.0773 REMARK 3 L13: -0.4080 L23: -0.1658 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: -0.0737 S13: 0.0760 REMARK 3 S21: -0.1429 S22: 0.0027 S23: 0.0804 REMARK 3 S31: 0.2151 S32: -0.2148 S33: -0.0186 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 107 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5280 12.7010 21.6120 REMARK 3 T TENSOR REMARK 3 T11: 0.1082 T22: 0.0750 REMARK 3 T33: 0.0563 T12: -0.0412 REMARK 3 T13: 0.0242 T23: 0.0457 REMARK 3 L TENSOR REMARK 3 L11: 1.9368 L22: 1.8219 REMARK 3 L33: 4.1918 L12: -0.2483 REMARK 3 L13: -0.2976 L23: -0.7033 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: -0.1113 S13: 0.0768 REMARK 3 S21: -0.1027 S22: 0.0408 S23: 0.0381 REMARK 3 S31: -0.0619 S32: 0.2493 S33: -0.0638 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 107 REMARK 3 ORIGIN FOR THE GROUP (A): 39.0290 37.9330 5.7660 REMARK 3 T TENSOR REMARK 3 T11: 0.2524 T22: 0.1020 REMARK 3 T33: 0.0987 T12: -0.0205 REMARK 3 T13: -0.0217 T23: 0.0741 REMARK 3 L TENSOR REMARK 3 L11: 0.8687 L22: 4.9996 REMARK 3 L33: 0.9850 L12: 1.0456 REMARK 3 L13: -0.0486 L23: 1.1510 REMARK 3 S TENSOR REMARK 3 S11: -0.0741 S12: 0.1015 S13: 0.0696 REMARK 3 S21: -0.1296 S22: 0.0526 S23: 0.1651 REMARK 3 S31: -0.2163 S32: -0.1241 S33: 0.0214 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -1 D 107 REMARK 3 ORIGIN FOR THE GROUP (A): 47.0340 38.5790 35.8780 REMARK 3 T TENSOR REMARK 3 T11: 0.5199 T22: 0.1431 REMARK 3 T33: 0.1639 T12: -0.0584 REMARK 3 T13: -0.0463 T23: 0.1098 REMARK 3 L TENSOR REMARK 3 L11: 1.1220 L22: 3.8941 REMARK 3 L33: 6.1906 L12: 0.3838 REMARK 3 L13: -1.8711 L23: -1.7729 REMARK 3 S TENSOR REMARK 3 S11: 0.1006 S12: -0.0773 S13: -0.0426 REMARK 3 S21: -0.0681 S22: -0.0659 S23: 0.1496 REMARK 3 S31: -0.1290 S32: 0.0335 S33: -0.0346 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E -2 E 107 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7970 11.8840 38.6540 REMARK 3 T TENSOR REMARK 3 T11: 0.2003 T22: 0.4698 REMARK 3 T33: 0.1606 T12: -0.0416 REMARK 3 T13: 0.0442 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 4.3811 L22: 0.5176 REMARK 3 L33: 5.8068 L12: -0.3230 REMARK 3 L13: -2.3586 L23: -0.7485 REMARK 3 S TENSOR REMARK 3 S11: -0.0734 S12: -0.1539 S13: 0.1971 REMARK 3 S21: -0.0838 S22: 0.0955 S23: -0.1206 REMARK 3 S31: 0.0740 S32: 0.0008 S33: -0.0221 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 0 F 107 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9600 20.1500 68.6770 REMARK 3 T TENSOR REMARK 3 T11: 0.0988 T22: 0.2990 REMARK 3 T33: 0.0784 T12: -0.0307 REMARK 3 T13: 0.0115 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 5.9289 L22: 0.8964 REMARK 3 L33: 0.9863 L12: -0.0527 REMARK 3 L13: -0.3057 L23: 0.1421 REMARK 3 S TENSOR REMARK 3 S11: 0.0491 S12: -0.3173 S13: 0.1756 REMARK 3 S21: 0.0930 S22: 0.0691 S23: -0.0983 REMARK 3 S31: -0.0581 S32: 0.3241 S33: -0.1183 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. THE DISTANCES OBSERVED IN THE 3 MOLECULES REMARK 3 BETWEEN THE CYSTEINYL SULFUR ATOMS (CYS 31 AND CYS 34) IS REMARK 3 HALFWAY BETWEEN THE VALUE REQUIRED FOR THE FORMATION OF A REMARK 3 DISULFIDE BOND (OXIDIZED FORM) AND THE VALUE REQUIRED IN THE REMARK 3 ABSENCE OF SUCH A BOND (SUM OF VDW RADII IN THE REDUCED FORM). REMARK 3 AN HYPOTHESIS COULD BE THAT ALTERNATE CONFORMATIONS (OXIDIZED REMARK 3 AND REDUCED) COEXIST, BUT THE RESOLUTION ACHIEVED IS NOT HIGH REMARK 3 ENOUGH TO OBSERVE ALTERNATE CONFORMATIONS. THE ELECTRON REMARK 3 DENSITY IS THUS AN AVERAGE DENSITY BETWEEN BOTH CONFORMATIONS.
REMARK 4 REMARK 4 1UVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-04. REMARK 100 THE PDBE ID CODE IS EBI-14441.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8441 REMARK 200 MONOCHROMATOR : TRIANGULAR MONOCHROMATOR REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47020 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 23.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 2.110 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BEAST REMARK 200 STARTING MODEL: PDB ENTRY 1ERT REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.8 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.3 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350 22% (W/V), REMARK 280 NA ACETATE 0.1M (PH: 4.6), AMMONIUM SULFATE 0.2M, DTT 1MM
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 MET B -11 REMARK 465 ARG B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET D -11 REMARK 465 ARG D -10 REMARK 465 GLY D -9 REMARK 465 SER D -8 REMARK 465 HIS D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 MET E -11 REMARK 465 ARG E -10 REMARK 465 GLY E -9 REMARK 465 SER E -8 REMARK 465 HIS E -7 REMARK 465 HIS E -6 REMARK 465 HIS E -5 REMARK 465 HIS E -4 REMARK 465 HIS E -3 REMARK 465 MET F -11 REMARK 465 ARG F -10 REMARK 465 GLY F -9 REMARK 465 SER F -8 REMARK 465 HIS F -7 REMARK 465 HIS F -6 REMARK 465 HIS F -5 REMARK 465 HIS F -4 REMARK 465 HIS F -3 REMARK 465 HIS F -2 REMARK 465 GLY F -1
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP A 58 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP C 10 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG C 14 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP D 64 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP E 58 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP E 64 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG F 14 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP F 64 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 62 47.99 -141.24 REMARK 500 ASN C 17 30.28 -99.76 REMARK 500 HIS C 62 54.34 -142.24 REMARK 500 ILE C 106 -78.09 -67.12 REMARK 500 VAL D 15 -62.73 -122.18 REMARK 500 GLN D 29 -48.76 -22.70 REMARK 500 ASP D 58 100.82 -57.42 REMARK 500 HIS D 62 57.08 -147.45 REMARK 500 ASP D 64 -53.70 -20.02 REMARK 500 GLU D 70 40.03 81.95 REMARK 500 VAL E 15 -66.85 -120.98 REMARK 500 ASP E 64 -48.76 -29.60 REMARK 500 LYS E 88 133.02 -171.80 REMARK 500 ASP E 94 150.05 -43.29 REMARK 500 VAL F 15 -66.82 -109.14 REMARK 500 HIS F 62 52.42 -140.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE F 106 GLY F 107 -137.35 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W4V RELATED DB: PDB REMARK 900 STRUCTURE OF THE OXIDISED FORM OF HUMAN REMARK 900 THIOREDOXIN 2 REMARK 900 RELATED ID: 1W89 RELATED DB: PDB REMARK 900 STRUCTURE OF THE REDUCED FORM OF HUMAN REMARK 900 THIOREDOXIN 2
REMARK 999 REMARK 999 SEQUENCE REMARK 999 AMINO ACID NUMBERING STARTS AT THR1 WHICH IS THE FIRST REMARK 999 AMINO ACID OF THE PROCESSED PROTEIN WITHOUT ITS REMARK 999 MITOCHONDRIAL PRESEQUENCE. THUS, THR1 CORRESPONDS TO THR60 REMARK 999 OF Q99757.
DBREF 1UVZ A -11 0 PDB 1UVZ 1UVZ -11 0 DBREF 1UVZ A 1 107 UNP Q99757 THI2_HUMAN 60 166 DBREF 1UVZ B -11 0 PDB 1UVZ 1UVZ -11 0 DBREF 1UVZ B 1 107 UNP Q99757 THI2_HUMAN 60 166 DBREF 1UVZ C -11 0 PDB 1UVZ 1UVZ -11 0 DBREF 1UVZ C 1 107 UNP Q99757 THI2_HUMAN 60 166 DBREF 1UVZ D -11 0 PDB 1UVZ 1UVZ -11 0 DBREF 1UVZ D 1 107 UNP Q99757 THI2_HUMAN 60 166 DBREF 1UVZ E -11 0 PDB 1UVZ 1UVZ -11 0 DBREF 1UVZ E 1 107 UNP Q99757 THI2_HUMAN 60 166 DBREF 1UVZ F -11 0 PDB 1UVZ 1UVZ -11 0 DBREF 1UVZ F 1 107 UNP Q99757 THI2_HUMAN 60 166
SEQRES 1 A 119 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 A 119 THR PHE ASN ILE GLN ASP GLY PRO ASP PHE GLN ASP ARG SEQRES 3 A 119 VAL VAL ASN SER GLU THR PRO VAL VAL VAL ASP PHE HIS SEQRES 4 A 119 ALA GLN TRP CYS GLY PRO CYS LYS ILE LEU GLY PRO ARG SEQRES 5 A 119 LEU GLU LYS MET VAL ALA LYS GLN HIS GLY LYS VAL VAL SEQRES 6 A 119 MET ALA LYS VAL ASP ILE ASP ASP HIS THR ASP LEU ALA SEQRES 7 A 119 ILE GLU TYR GLU VAL SER ALA VAL PRO THR VAL LEU ALA SEQRES 8 A 119 MET LYS ASN GLY ASP VAL VAL ASP LYS PHE VAL GLY ILE SEQRES 9 A 119 LYS ASP GLU ASP GLN LEU GLU ALA PHE LEU LYS LYS LEU SEQRES 10 A 119 ILE GLY SEQRES 1 B 119 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 B 119 THR PHE ASN ILE GLN ASP GLY PRO ASP PHE GLN ASP ARG SEQRES 3 B 119 VAL VAL ASN SER GLU THR PRO VAL VAL VAL ASP PHE HIS SEQRES 4 B 119 ALA GLN TRP CYS GLY PRO CYS LYS ILE LEU GLY PRO ARG SEQRES 5 B 119 LEU GLU LYS MET VAL ALA LYS GLN HIS GLY LYS VAL VAL SEQRES 6 B 119 MET ALA LYS VAL ASP ILE ASP ASP HIS THR ASP LEU ALA SEQRES 7 B 119 ILE GLU TYR GLU VAL SER ALA VAL PRO THR VAL LEU ALA SEQRES 8 B 119 MET LYS ASN GLY ASP VAL VAL ASP LYS PHE VAL GLY ILE SEQRES 9 B 119 LYS ASP GLU ASP GLN LEU GLU ALA PHE LEU LYS LYS LEU SEQRES 10 B 119 ILE GLY SEQRES 1 C 119 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 C 119 THR PHE ASN ILE GLN ASP GLY PRO ASP PHE GLN ASP ARG SEQRES 3 C 119 VAL VAL ASN SER GLU THR PRO VAL VAL VAL ASP PHE HIS SEQRES 4 C 119 ALA GLN TRP CYS GLY PRO CYS LYS ILE LEU GLY PRO ARG SEQRES 5 C 119 LEU GLU LYS MET VAL ALA LYS GLN HIS GLY LYS VAL VAL SEQRES 6 C 119 MET ALA LYS VAL ASP ILE ASP ASP HIS THR ASP LEU ALA SEQRES 7 C 119 ILE GLU TYR GLU VAL SER ALA VAL PRO THR VAL LEU ALA SEQRES 8 C 119 MET LYS ASN GLY ASP VAL VAL ASP LYS PHE VAL GLY ILE SEQRES 9 C 119 LYS ASP GLU ASP GLN LEU GLU ALA PHE LEU LYS LYS LEU SEQRES 10 C 119 ILE GLY SEQRES 1 D 119 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 D 119 THR PHE ASN ILE GLN ASP GLY PRO ASP PHE GLN ASP ARG SEQRES 3 D 119 VAL VAL ASN SER GLU THR PRO VAL VAL VAL ASP PHE HIS SEQRES 4 D 119 ALA GLN TRP CYS GLY PRO CYS LYS ILE LEU GLY PRO ARG SEQRES 5 D 119 LEU GLU LYS MET VAL ALA LYS GLN HIS GLY LYS VAL VAL SEQRES 6 D 119 MET ALA LYS VAL ASP ILE ASP ASP HIS THR ASP LEU ALA SEQRES 7 D 119 ILE GLU TYR GLU VAL SER ALA VAL PRO THR VAL LEU ALA SEQRES 8 D 119 MET LYS ASN GLY ASP VAL VAL ASP LYS PHE VAL GLY ILE SEQRES 9 D 119 LYS ASP GLU ASP GLN LEU GLU ALA PHE LEU LYS LYS LEU SEQRES 10 D 119 ILE GLY SEQRES 1 E 119 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 E 119 THR PHE ASN ILE GLN ASP GLY PRO ASP PHE GLN ASP ARG SEQRES 3 E 119 VAL VAL ASN SER GLU THR PRO VAL VAL VAL ASP PHE HIS SEQRES 4 E 119 ALA GLN TRP CYS GLY PRO CYS LYS ILE LEU GLY PRO ARG SEQRES 5 E 119 LEU GLU LYS MET VAL ALA LYS GLN HIS GLY LYS VAL VAL SEQRES 6 E 119 MET ALA LYS VAL ASP ILE ASP ASP HIS THR ASP LEU ALA SEQRES 7 E 119 ILE GLU TYR GLU VAL SER ALA VAL PRO THR VAL LEU ALA SEQRES 8 E 119 MET LYS ASN GLY ASP VAL VAL ASP LYS PHE VAL GLY ILE SEQRES 9 E 119 LYS ASP GLU ASP GLN LEU GLU ALA PHE LEU LYS LYS LEU SEQRES 10 E 119 ILE GLY SEQRES 1 F 119 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 F 119 THR PHE ASN ILE GLN ASP GLY PRO ASP PHE GLN ASP ARG SEQRES 3 F 119 VAL VAL ASN SER GLU THR PRO VAL VAL VAL ASP PHE HIS SEQRES 4 F 119 ALA GLN TRP CYS GLY PRO CYS LYS ILE LEU GLY PRO ARG SEQRES 5 F 119 LEU GLU LYS MET VAL ALA LYS GLN HIS GLY LYS VAL VAL SEQRES 6 F 119 MET ALA LYS VAL ASP ILE ASP ASP HIS THR ASP LEU ALA SEQRES 7 F 119 ILE GLU TYR GLU VAL SER ALA VAL PRO THR VAL LEU ALA SEQRES 8 F 119 MET LYS ASN GLY ASP VAL VAL ASP LYS PHE VAL GLY ILE SEQRES 9 F 119 LYS ASP GLU ASP GLN LEU GLU ALA PHE LEU LYS LYS LEU SEQRES 10 F 119 ILE GLY
FORMUL 7 HOH *525(H2 O)
HELIX 1 1 ASP A 7 VAL A 15 1 9 HELIX 2 2 PRO A 33 GLN A 48 1 16 HELIX 3 3 HIS A 62 TYR A 69 1 8 HELIX 4 4 ASP A 94 GLY A 107 1 14 HELIX 5 5 ASP B 7 VAL B 15 1 9 HELIX 6 6 PRO B 33 GLN B 48 1 16 HELIX 7 7 HIS B 62 TYR B 69 1 8 HELIX 8 8 ASP B 94 GLY B 107 1 14 HELIX 9 9 ASP C 7 VAL C 15 1 9 HELIX 10 10 PRO C 33 GLN C 48 1 16 HELIX 11 11 HIS C 62 GLU C 70 1 9 HELIX 12 12 ASP C 94 GLY C 107 1 14 HELIX 13 13 ASP D 7 VAL D 15 1 9 HELIX 14 14 PRO D 33 LYS D 47 1 15 HELIX 15 15 HIS D 62 GLU D 70 1 9 HELIX 16 16 ASP D 94 GLY D 107 1 14 HELIX 17 17 ASP E 7 VAL E 15 1 9 HELIX 18 18 CYS E 31 GLN E 48 1 18 HELIX 19 19 HIS E 62 GLU E 70 1 9 HELIX 20 20 ASP E 94 GLY E 107 1 14 HELIX 21 21 ASP F 7 VAL F 15 1 9 HELIX 22 22 PRO F 33 LYS F 47 1 15 HELIX 23 23 HIS F 62 TYR F 69 1 8 HELIX 24 24 ASP F 94 GLY F 107 1 14
SHEET 1 AA 5 THR A 2 ASN A 4 0 SHEET 2 AA 5 VAL A 53 ASP A 58 1 O MET A 54 N PHE A 3 SHEET 3 AA 5 VAL A 22 HIS A 27 1 O VAL A 23 N ALA A 55 SHEET 4 AA 5 THR A 76 LYS A 81 -1 O THR A 76 N PHE A 26 SHEET 5 AA 5 ASP A 84 VAL A 90 -1 O ASP A 84 N LYS A 81 SHEET 1 BA 5 THR B 2 ASN B 4 0 SHEET 2 BA 5 VAL B 53 ASP B 58 1 O MET B 54 N PHE B 3 SHEET 3 BA 5 VAL B 22 HIS B 27 1 O VAL B 23 N ALA B 55 SHEET 4 BA 5 THR B 76 LYS B 81 -1 O THR B 76 N PHE B 26 SHEET 5 BA 5 ASP B 84 VAL B 90 -1 O ASP B 84 N LYS B 81 SHEET 1 CA 5 THR C 2 ASN C 4 0 SHEET 2 CA 5 VAL C 53 ASP C 58 1 O MET C 54 N PHE C 3 SHEET 3 CA 5 VAL C 22 HIS C 27 1 O VAL C 23 N ALA C 55 SHEET 4 CA 5 THR C 76 LYS C 81 -1 O THR C 76 N PHE C 26 SHEET 5 CA 5 ASP C 84 VAL C 90 -1 O ASP C 84 N LYS C 81 SHEET 1 DA 5 THR D 2 ASN D 4 0 SHEET 2 DA 5 VAL D 53 ASP D 58 1 O MET D 54 N PHE D 3 SHEET 3 DA 5 VAL D 22 HIS D 27 1 O VAL D 23 N ALA D 55 SHEET 4 DA 5 THR D 76 LYS D 81 -1 O THR D 76 N PHE D 26 SHEET 5 DA 5 ASP D 84 VAL D 90 -1 O ASP D 84 N LYS D 81 SHEET 1 EA 5 THR E 2 ASN E 4 0 SHEET 2 EA 5 VAL E 53 ASP E 58 1 O MET E 54 N PHE E 3 SHEET 3 EA 5 VAL E 22 HIS E 27 1 O VAL E 23 N ALA E 55 SHEET 4 EA 5 THR E 76 LYS E 81 -1 O THR E 76 N PHE E 26 SHEET 5 EA 5 ASP E 84 VAL E 90 -1 O ASP E 84 N LYS E 81 SHEET 1 FA 5 THR F 2 ASN F 4 0 SHEET 2 FA 5 VAL F 53 ASP F 58 1 O MET F 54 N PHE F 3 SHEET 3 FA 5 VAL F 22 HIS F 27 1 O VAL F 23 N ALA F 55 SHEET 4 FA 5 THR F 76 LYS F 81 -1 O THR F 76 N PHE F 26 SHEET 5 FA 5 ASP F 84 VAL F 90 -1 O ASP F 84 N LYS F 81
CISPEP 1 VAL A 74 PRO A 75 0 -6.32 CISPEP 2 VAL B 74 PRO B 75 0 -8.99 CISPEP 3 VAL C 74 PRO C 75 0 1.24 CISPEP 4 VAL D 74 PRO D 75 0 0.71 CISPEP 5 VAL E 74 PRO E 75 0 -4.00 CISPEP 6 VAL F 74 PRO F 75 0 -8.34
CRYST1 49.038 49.087 78.977 87.96 83.19 79.08 P 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020392 -0.003934 -0.002382 0.00000
SCALE2 0.000000 0.020748 -0.000279 0.00000
SCALE3 0.000000 0.000000 0.012753 0.00000
MTRIX1 1 -0.188040 -0.982130 0.007330 61.36439 1
MTRIX2 1 -0.982150 0.188060 0.003450 50.73463 1
MTRIX3 1 -0.004770 -0.006550 -0.999970 75.04037 1
MTRIX1 2 0.874410 -0.379250 -0.302620 24.50591 1
MTRIX2 2 -0.380670 -0.922970 0.056760 64.28873 1
MTRIX3 2 -0.300830 0.065570 -0.951420 67.63113 1
MTRIX1 3 0.137700 -0.958900 0.248100 42.30188 1
MTRIX2 3 0.990370 0.129570 -0.048880 -1.82230 1
MTRIX3 3 0.014720 0.252440 0.967500 -19.69132 1
MTRIX1 4 -0.998260 0.058880 -0.000140 55.53374 1
MTRIX2 4 0.056900 0.964110 -0.259350 9.29175 1
MTRIX3 4 -0.015140 -0.258910 -0.965780 94.42096 1
MTRIX1 5 0.197710 0.980070 -0.019420 -4.62847 1
MTRIX2 5 -0.918250 0.192110 0.346270 37.11396 1
MTRIX3 5 0.343100 -0.050630 0.937930 5.54049 1