1UQN - Header Asymmetric Unit

HEADER OXIDOREDUCTASE 15-OCT-03 1UQN

TITLE REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, MODELS 71-140.

COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN 1; COMPND 3 CHAIN: G; COMPND 4 SYNONYM: GRX1; COMPND 5 OTHER_DETAILS: MODEL, 325 STRUCTURES FROM 70 NS MD COMPND 6 SIMULATION. THIS ENTRY HAS 70 MODELS. THE OTHER ENTRIES COMPND 7 ARE 1UQ3, 1UQ6, 1UQ7 AND 1UQH

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 OTHER_DETAILS: INITIAL MODEL COORDINATES TAKEN FROM 1EGR

KEYWDS ELECTRON TRANSPORT, OXIDOREDUCTASE, DEOXYRIBONUCLEOTIDE KEYWDS 2 SYNTHESIS

EXPDTA THEORETICAL MODEL

AUTHOR N.FOLOPPE,L.NILSSON

REVDAT 2 19-FEB-04 1UQN 1 JRNL REVDAT 1 06-NOV-03 1UQN 0

JRNL AUTH N.FOLOPPE,L.NILSSON JRNL TITL THE GLUTAREDOXIN-C-P-Y-C- MOTIF; INFLUENCE OF JRNL TITL 2 PERIPHERAL RESIDUES JRNL REF STRUCTURE V. 12 289 2004 JRNL REFN ASTM STRUE6 US ISSN 0969-2126

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1UQN COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 16-OCT-2003. REMARK 100 THE EBI ID CODE IS EBI-13725.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 400 REMARK 400 COMPOUND THE RESULTS OF THE SIMULATION ARE SPLIT ACROSS 5 REMARK 400 PDB ENTRIES. THIS IS PART 2 OF 5 (325 MODELS ALTOGETHER). REMARK 400 THIS ENTRY CONTAINS 70 MODELS OF THE TIME COURSE MD REMARK 400 SIMULATION. THE OTHER ENTRIES ARE AS FOLLOWS: 1UQ3 : MODELS REMARK 400 1 - 70 1UQ6 : MODELS 141 - 210 1UQ7 : MODELS 211 - 280 1UQH REMARK 400 : MODELS 281 - 325 FUNCTION: THE DISULFIDE BOND FUNCTIONS REMARK 400 AS AN ELECTRON CARRIER IN THE GLUTATHIONE-DEPENDENT REMARK 400 SYNTHESIS OF DEOXYRIBONUCLEOTIDES BY T ENZYME REMARK 400 RIBONUCLEOTIDE REDUCTASE. IN ADDITION, IT IS ALSO INVOLVE REMARK 400 IN REDUCING SOME DISULFIDES IN A COUPLED SYSTEM WITH REMARK 400 GLUTATHIONE REDUCTASE.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 126 LYS G 45 -110.10 26.75 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL G 59 PRO G 60 78 -30.64 REMARK 500 GLY G 53 LYS G 54 82 -147.16 REMARK 500 GLU G 81 ASN G 82 111 -149.45 REMARK 500 THR G 58 VAL G 59 131 -144.80 REMARK 500 VAL G 59 PRO G 60 137 -33.92

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CC REMARK 800 SITE_DESCRIPTION: CYS 11 (THIOLATE) AND CYS 14 ARE REMARK 800 THE ACTIVE CYSTEINS INVOLVED IN DISULFIDE FORMATION

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EGO RELATED DB: PDB REMARK 900 GLUTAREDOXIN (OXIDIZED) (NMR, 20 STRUCTURES) REMARK 900 RELATED ID: 1EGR RELATED DB: PDB REMARK 900 GLUTAREDOXIN (REDUCED) (NMR, 20 STRUCTURES) REMARK 900 RELATED ID: 1GRX RELATED DB: PDB REMARK 900 STRUCTURE OF E. COLI GLUTAREDOXIN REMARK 900 RELATED ID: 1QFN RELATED DB: PDB REMARK 900 GLUTAREDOXIN-1-RIBONUCLEOTIDE REDUCTASE B1 REMARK 900 MIXED DISULFIDE BOND REMARK 900 RELATED ID: 1UPY RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 1-70 REMARK 900 RELATED ID: 1UPZ RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 71-140 REMARK 900 RELATED ID: 1UQ0 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 141-210 REMARK 900 RELATED ID: 1UQ1 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 211-280 REMARK 900 RELATED ID: 1UQ2 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 281-350 REMARK 900 RELATED ID: 1UQ3 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 1-70 REMARK 900 RELATED ID: 1UQ6 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 141-210 REMARK 900 RELATED ID: 1UQ7 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 211-280 REMARK 900 RELATED ID: 1UQH RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 281-325

DBREF 1UQN G 1 85 UNP P00277 GLR1_ECOLI 1 85

SEQRES 1 G 85 MET GLN THR VAL ILE PHE GLY ARG SER GLY CYS PRO TYR SEQRES 2 G 85 CYS VAL ARG ALA LYS ASP LEU ALA GLU LYS LEU SER ASN SEQRES 3 G 85 GLU ARG ASP ASP PHE GLN TYR GLN TYR VAL ASP ILE ARG SEQRES 4 G 85 ALA GLU GLY ILE THR LYS GLU ASP LEU GLN GLN LYS ALA SEQRES 5 G 85 GLY LYS PRO VAL GLU THR VAL PRO GLN ILE PHE VAL ASP SEQRES 6 G 85 GLN GLN HIS ILE GLY GLY TYR THR ASP PHE ALA ALA TRP SEQRES 7 G 85 VAL LYS GLU ASN LEU ASP ALA

HELIX 1 1 PRO G 12 ARG G 28 1 17 HELIX 2 2 THR G 44 GLY G 53 1 10 HELIX 3 3 GLY G 71 GLU G 81 1 11

SHEET 1 GA 4 GLN G 32 ASP G 37 0 SHEET 2 GA 4 GLN G 2 GLY G 7 1 O THR G 3 N GLN G 34 SHEET 3 GA 4 GLN G 61 PHE G 63 -1 O GLN G 61 N PHE G 6 SHEET 4 GA 4 HIS G 68 GLY G 70 -1 N ILE G 69 O ILE G 62

CISPEP 1 VAL G 59 PRO G 60 71 -5.03 CISPEP 2 VAL G 59 PRO G 60 72 -22.73 CISPEP 3 VAL G 59 PRO G 60 73 -16.59 CISPEP 4 VAL G 59 PRO G 60 74 -11.06 CISPEP 5 VAL G 59 PRO G 60 75 -5.18 CISPEP 6 VAL G 59 PRO G 60 76 -12.66 CISPEP 7 VAL G 59 PRO G 60 77 -13.07 CISPEP 8 VAL G 59 PRO G 60 79 -13.81 CISPEP 9 VAL G 59 PRO G 60 80 -22.37 CISPEP 10 VAL G 59 PRO G 60 81 -17.84 CISPEP 11 VAL G 59 PRO G 60 82 -14.93 CISPEP 12 VAL G 59 PRO G 60 83 9.69 CISPEP 13 VAL G 59 PRO G 60 84 -19.29 CISPEP 14 VAL G 59 PRO G 60 85 -8.25 CISPEP 15 VAL G 59 PRO G 60 86 -25.21 CISPEP 16 VAL G 59 PRO G 60 87 -11.22 CISPEP 17 VAL G 59 PRO G 60 88 -11.43 CISPEP 18 VAL G 59 PRO G 60 89 -23.05 CISPEP 19 VAL G 59 PRO G 60 90 -16.60 CISPEP 20 VAL G 59 PRO G 60 91 -6.72 CISPEP 21 VAL G 59 PRO G 60 92 -6.64 CISPEP 22 VAL G 59 PRO G 60 93 -6.21 CISPEP 23 VAL G 59 PRO G 60 94 -5.66 CISPEP 24 VAL G 59 PRO G 60 95 -3.08 CISPEP 25 VAL G 59 PRO G 60 96 -8.02 CISPEP 26 VAL G 59 PRO G 60 97 3.97 CISPEP 27 VAL G 59 PRO G 60 98 -7.34 CISPEP 28 VAL G 59 PRO G 60 99 -8.44 CISPEP 29 VAL G 59 PRO G 60 100 -6.10 CISPEP 30 VAL G 59 PRO G 60 101 -20.71 CISPEP 31 VAL G 59 PRO G 60 102 -18.31 CISPEP 32 VAL G 59 PRO G 60 103 -0.70 CISPEP 33 VAL G 59 PRO G 60 104 -22.38 CISPEP 34 VAL G 59 PRO G 60 105 -15.49 CISPEP 35 VAL G 59 PRO G 60 106 -4.44 CISPEP 36 VAL G 59 PRO G 60 107 -18.85 CISPEP 37 VAL G 59 PRO G 60 108 -16.87 CISPEP 38 VAL G 59 PRO G 60 109 6.90 CISPEP 39 VAL G 59 PRO G 60 110 -18.11 CISPEP 40 VAL G 59 PRO G 60 111 27.95 CISPEP 41 VAL G 59 PRO G 60 112 -7.77 CISPEP 42 VAL G 59 PRO G 60 113 -7.36 CISPEP 43 VAL G 59 PRO G 60 114 2.64 CISPEP 44 VAL G 59 PRO G 60 115 -7.89 CISPEP 45 VAL G 59 PRO G 60 116 2.81 CISPEP 46 VAL G 59 PRO G 60 117 -2.48 CISPEP 47 VAL G 59 PRO G 60 118 -25.82 CISPEP 48 VAL G 59 PRO G 60 119 -11.31 CISPEP 49 VAL G 59 PRO G 60 120 -12.27 CISPEP 50 VAL G 59 PRO G 60 121 -12.96 CISPEP 51 VAL G 59 PRO G 60 122 2.62 CISPEP 52 VAL G 59 PRO G 60 123 -2.22 CISPEP 53 VAL G 59 PRO G 60 124 -1.60 CISPEP 54 VAL G 59 PRO G 60 125 -14.77 CISPEP 55 VAL G 59 PRO G 60 126 -27.93 CISPEP 56 VAL G 59 PRO G 60 127 -1.74 CISPEP 57 VAL G 59 PRO G 60 128 -15.75 CISPEP 58 VAL G 59 PRO G 60 129 1.71 CISPEP 59 VAL G 59 PRO G 60 130 -7.03 CISPEP 60 VAL G 59 PRO G 60 131 -13.27 CISPEP 61 VAL G 59 PRO G 60 132 -10.75 CISPEP 62 VAL G 59 PRO G 60 133 -10.39 CISPEP 63 VAL G 59 PRO G 60 134 -29.25 CISPEP 64 VAL G 59 PRO G 60 135 -11.38 CISPEP 65 VAL G 59 PRO G 60 136 -16.17 CISPEP 66 VAL G 59 PRO G 60 138 1.70 CISPEP 67 VAL G 59 PRO G 60 139 -20.21 CISPEP 68 VAL G 59 PRO G 60 140 -24.01

SITE 1 CC 4 CYS G 11 PRO G 12 TYR G 13 CYS G 14

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000