10 20 30 40 50 60 70 80 1UQJ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 15-OCT-03 1UQJ
TITLE REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY MODELS 136-180
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN 3; COMPND 3 CHAIN: G; COMPND 4 SYNONYM: GRX3; COMPND 5 OTHER_DETAILS: MODEL, 225 STRUCTURES FROM 50 NS MD COMPND 6 SIMULATION. THIS ENTRY HAS 45 MODELS. THE OTHER ENTRIES COMPND 7 ARE 1UQ8, 1UQI, 1UQK AND 1UQL
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 OTHER_DETAILS: INITIAL MODEL COORDINATES TAKEN FROM 3GRX SOURCE 4 SEE ALSO MODEL STRUCTURE 1ILB
KEYWDS ELECTRON TRANSPORT, OXIDOREDUCTASE, DEOXYRIBONUCLEOTIDE KEYWDS 2 SYNTHESIS
EXPDTA THEORETICAL MODEL
AUTHOR N.FOLOPPE,L.NILSSON
REVDAT 2 19-FEB-04 1UQJ 1 JRNL REVDAT 1 06-NOV-03 1UQJ 0
JRNL AUTH N.FOLOPPE,L.NILSSON JRNL TITL THE GLUTAREDOXIN-C-P-Y-C- MOTIF; INFLUENCE OF JRNL TITL 2 PERIPHERAL RESIDUES JRNL REF STRUCTURE V. 12 289 2004 JRNL REFN ASTM STRUE6 US ISSN 0969-2126
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.FOLOPPE,J.SAGEMARK,K.NORDSTRAND,K.D.BERNDT REMARK 1 TITL STRUCTURE, DYNAMICS AND ELECTROSTATICS OF THE REMARK 1 TITL 2 ACTIVE SITE OF GLUTAREDOXIN 3 FROM ESCHERICHIA REMARK 1 TITL 3 COLI: COMPARISON WITH FUNCTIONALLY RELATED PROTEINS REMARK 1 REF J.MOL.BIOL. V. 310 449 2001 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1UQJ COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 17-OCT-2003. REMARK 100 THE EBI ID CODE IS EBI-13731.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 400 REMARK 400 COMPOUND THE RESULTS OF THE SIMULATION ARE SPLIT ACROSS 5 REMARK 400 PDB ENTRIES. THIS IS PART 1 OF 5 (225 MODELS ALTOGETHER). REMARK 400 THIS ENTRY CONTAINS 45 MODELS OF THE TIME COURSE MD REMARK 400 SIMULATION. THE OTHER ENTRIES ARE AS FOLLOWS: 1UQ8 : MODELS REMARK 400 1 - 45 1UQI : MODELS 46 - 90 1UQK : MODELS 91 - 135 1UQL : REMARK 400 MODELS 181 - 225 FUNCTION: THE DISULFIDE BOND FUNCTIONS AS REMARK 400 AN ELECTRON CARRIER IN THE GLUTATHIONE-DEPENDENT SYNTHESIS REMARK 400 OF DEOXYRIBONUCLEOTIDES BY T ENZYME RIBONUCLEOTIDE REMARK 400 REDUCTASE. IN ADDITION, IT IS ALSO INVOLVE IN REDUCING SOME REMARK 400 DISULFIDES IN A COUPLED SYSTEM WITH GLUTATHIONE REDUCTASE.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 136 ASP G 58 -109.42 67.21 REMARK 500 137 ASP G 58 -98.24 51.63 REMARK 500 138 ASP G 58 -99.22 61.90 REMARK 500 140 ASP G 58 -95.27 64.80 REMARK 500 141 ASP G 58 -100.56 63.74 REMARK 500 142 ASP G 58 -104.79 59.53 REMARK 500 143 ASP G 58 -100.19 54.01 REMARK 500 144 ASP G 58 -88.51 50.00 REMARK 500 145 ASP G 58 -98.09 56.14 REMARK 500 146 ASP G 58 -108.60 50.29 REMARK 500 147 ASP G 58 -111.05 51.35 REMARK 500 148 ASP G 58 -106.21 48.04 REMARK 500 150 ASP G 58 -72.87 54.49 REMARK 500 151 ASP G 58 -110.94 55.05 REMARK 500 152 ASP G 58 -119.24 48.13 REMARK 500 153 ASP G 58 -107.82 51.60 REMARK 500 154 ASP G 58 -110.34 48.27 REMARK 500 155 ASP G 58 -105.07 40.49 REMARK 500 156 ASP G 58 -115.92 42.64 REMARK 500 157 ASP G 58 -69.31 45.20 REMARK 500 158 ASP G 58 -108.22 52.34 REMARK 500 159 ASP G 58 -110.25 42.41 REMARK 500 160 ASP G 58 -100.16 56.91 REMARK 500 161 ASP G 58 -94.67 63.96 REMARK 500 162 ASP G 58 -103.95 48.73 REMARK 500 164 ASP G 58 -115.00 54.01 REMARK 500 166 ASP G 58 -118.26 55.61 REMARK 500 167 ASP G 58 -99.24 65.08 REMARK 500 168 ASP G 58 -99.45 69.75 REMARK 500 169 ASP G 58 -110.44 59.16 REMARK 500 171 ASP G 58 -110.60 63.91 REMARK 500 172 ASP G 58 -108.30 57.36 REMARK 500 173 ASP G 58 -102.06 45.98 REMARK 500 174 ASP G 58 -98.48 67.47 REMARK 500 176 ASP G 58 -117.96 53.65 REMARK 500 177 ASP G 58 -106.63 34.68 REMARK 500 178 ASP G 58 -99.48 64.52 REMARK 500 179 ASP G 58 -96.59 40.33 REMARK 500 180 ASP G 58 -106.06 59.95 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL G 52 PRO G 53 153 30.32 REMARK 500 ALA G 59 GLN G 60 161 -148.34 REMARK 500 THR G 7 LYS G 8 164 148.60 REMARK 500 LYS G 24 GLY G 25 170 149.42
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CC REMARK 800 SITE_DESCRIPTION: CYS 11 (THIOLATE) AND CYS 14 ARE THE REMARK 800 ACTIVE CYSTEINS INVOLVED IN DISULFIDE FORMATION
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FOV RELATED DB: PDB REMARK 900 GLUTAREDOXIN 3 FROM ESCHERICHIA COLI IN THE REMARK 900 FULLY OXIDIZEDFORM REMARK 900 RELATED ID: 1ILB RELATED DB: PDB REMARK 900 THEORETICAL MODEL OF REDUCED E. COLI REMARK 900 GLUTAREDOXIN 3 REMARK 900 RELATED ID: 3GRX RELATED DB: PDB REMARK 900 NMR STRUCTURE OF ESCHERICHIA COLI GLUTAREDOXIN REMARK 900 3-GLUTATHIONE MIXED DISULFIDE COMPLEX, 20 REMARK 900 STRUCTURES REMARK 900 RELATED ID: 1UQ8 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY, REMARK 900 MODELS 1-45 REMARK 900 RELATED ID: 1UQI RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY, REMARK 900 MODELS 46-90 REMARK 900 RELATED ID: 1UQK RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY, REMARK 900 MODELS 91-135 REMARK 900 RELATED ID: 1UQL RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY, REMARK 900 MODELS 180-225
DBREF 1UQJ G 1 82 UNP P37687 GLR3_ECOLI 1 82
SEQRES 1 G 82 ALA ASN VAL GLU ILE TYR THR LYS GLU THR CYS PRO TYR SEQRES 2 G 82 CYS HIS ARG ALA LYS ALA LEU LEU SER SER LYS GLY VAL SEQRES 3 G 82 SER PHE GLN GLU LEU PRO ILE ASP GLY ASN ALA ALA LYS SEQRES 4 G 82 ARG GLU GLU MET ILE LYS ARG SER GLY ARG THR THR VAL SEQRES 5 G 82 PRO GLN ILE PHE ILE ASP ALA GLN HIS ILE GLY GLY CYS SEQRES 6 G 82 ASP ASP LEU TYR ALA LEU ASP ALA ARG GLY GLY LEU ASP SEQRES 7 G 82 PRO LEU LEU LYS
HELIX 1 1 CYS G 11 GLY G 25 1 15 HELIX 2 2 ALA G 38 ILE G 44 1 7 HELIX 3 3 GLY G 64 GLY G 75 1 12 HELIX 4 4 LEU G 77 LYS G 82 1 6
SHEET 1 GA 4 PHE G 28 PRO G 32 0 SHEET 2 GA 4 VAL G 3 THR G 7 1 O VAL G 3 N GLN G 29 SHEET 3 GA 4 GLN G 54 ILE G 57 -1 O GLN G 54 N TYR G 6 SHEET 4 GA 4 GLN G 60 GLY G 63 -1 O GLN G 60 N ILE G 57
CISPEP 1 VAL G 52 PRO G 53 136 -22.40 CISPEP 2 VAL G 52 PRO G 53 137 -17.87 CISPEP 3 VAL G 52 PRO G 53 138 5.90 CISPEP 4 VAL G 52 PRO G 53 139 -9.63 CISPEP 5 VAL G 52 PRO G 53 140 -2.10 CISPEP 6 VAL G 52 PRO G 53 141 3.92 CISPEP 7 VAL G 52 PRO G 53 142 1.09 CISPEP 8 VAL G 52 PRO G 53 143 23.92 CISPEP 9 VAL G 52 PRO G 53 144 8.22 CISPEP 10 VAL G 52 PRO G 53 145 -25.59 CISPEP 11 VAL G 52 PRO G 53 146 -4.93 CISPEP 12 VAL G 52 PRO G 53 147 9.38 CISPEP 13 VAL G 52 PRO G 53 148 5.27 CISPEP 14 VAL G 52 PRO G 53 149 -1.06 CISPEP 15 VAL G 52 PRO G 53 150 12.50 CISPEP 16 VAL G 52 PRO G 53 151 16.60 CISPEP 17 VAL G 52 PRO G 53 152 12.60 CISPEP 18 VAL G 52 PRO G 53 154 20.81 CISPEP 19 VAL G 52 PRO G 53 155 17.24 CISPEP 20 VAL G 52 PRO G 53 156 24.78 CISPEP 21 VAL G 52 PRO G 53 157 12.06 CISPEP 22 VAL G 52 PRO G 53 158 -18.44 CISPEP 23 VAL G 52 PRO G 53 159 -12.72 CISPEP 24 VAL G 52 PRO G 53 160 12.07 CISPEP 25 VAL G 52 PRO G 53 161 5.59 CISPEP 26 VAL G 52 PRO G 53 162 -7.59 CISPEP 27 VAL G 52 PRO G 53 163 -19.79 CISPEP 28 VAL G 52 PRO G 53 164 0.36 CISPEP 29 VAL G 52 PRO G 53 165 7.62 CISPEP 30 VAL G 52 PRO G 53 166 -15.35 CISPEP 31 VAL G 52 PRO G 53 167 -7.80 CISPEP 32 VAL G 52 PRO G 53 168 -3.05 CISPEP 33 VAL G 52 PRO G 53 169 8.00 CISPEP 34 VAL G 52 PRO G 53 170 -19.75 CISPEP 35 VAL G 52 PRO G 53 171 9.01 CISPEP 36 VAL G 52 PRO G 53 172 -5.03 CISPEP 37 VAL G 52 PRO G 53 173 0.27 CISPEP 38 VAL G 52 PRO G 53 174 -8.20 CISPEP 39 VAL G 52 PRO G 53 175 -11.50 CISPEP 40 VAL G 52 PRO G 53 176 -2.68 CISPEP 41 VAL G 52 PRO G 53 177 -0.56 CISPEP 42 VAL G 52 PRO G 53 178 -9.06 CISPEP 43 VAL G 52 PRO G 53 179 -6.97 CISPEP 44 VAL G 52 PRO G 53 180 -13.87
SITE 1 CC 4 CYS G 11 PRO G 12 TYR G 13 CYS G 14
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000