1UQC - Header Asymmetric Unit

HEADER DNA 26-JUN-96 1UQC

TITLE SELF-COMPLEMENTARY DNA 5'-D(CACGTG)2, NMR, MINIMIZED TITLE 2 AVERAGE STRUCTURE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*CP*GP*TP*G)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: IN 10 MM SODIUM PHOSPHATE BUFFER AT 10 DEG. COMPND 6 CELSIUS, 5.7 MM DOUBLE STRANDED CONCENTRATION

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES

KEYWDS DEOXYRIBONUCLEIC ACID, DNA

EXPDTA SOLUTION NMR

AUTHOR S.L.LAM,S.C.F.AU-YEUNG

REVDAT 3 24-FEB-09 1UQC 1 VERSN REVDAT 2 01-APR-03 1UQC 1 JRNL REVDAT 1 27-JAN-97 1UQC 0

JRNL AUTH S.L.LAM,S.C.AU-YEUNG JRNL TITL SEQUENCE-SPECIFIC LOCAL STRUCTURAL VARIATIONS IN JRNL TITL 2 SOLUTION STRUCTURES OF D(CGXX'CG)2 AND D(CAXX'TG)2 JRNL TITL 3 SELF-COMPLEMENTARY DEOXYRIBONUCLEIC ACIDS. JRNL REF J.MOL.BIOL. V. 266 745 1997 JRNL REFN ISSN 0022-2836 JRNL PMID 9102467 JRNL DOI 10.1006/JMBI.1996.0783

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 4.0 REMARK 3 AUTHORS : PEARLMAN,CASE,CALDWELL,SEIBEL,SINGH,WEINER, REMARK 3 KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1UQC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: IN 10 MM SODIUM PHOSPHATE BUFFER AT 10 DEGREES CELSIUS, REMARK 210 5.7 MM DOUBLE STRANDED CONCENTRATION

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 7.1 DEGREES REMARK 500 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT A 5 O4' - C4' - C3' ANGL. DEV. = 7.0 DEGREES REMARK 500 DG A 6 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC B 7 O4' - C1' - N1 ANGL. DEV. = 7.1 DEGREES REMARK 500 DA B 8 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT B 11 O4' - C4' - C3' ANGL. DEV. = 6.9 DEGREES REMARK 500 DG B 12 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC A 3 0.06 SIDE_CHAIN REMARK 500 DG A 4 0.10 SIDE_CHAIN REMARK 500 DG B 10 0.10 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BUF RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 1UQA RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 1UQB RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 1UQD RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 1UQE RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 1UQF RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 1UQG RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE

DBREF 1UQC A 1 6 PDB 1UQC 1UQC 1 6 DBREF 1UQC B 7 12 PDB 1UQC 1UQC 7 12

SEQRES 1 A 6 DC DA DC DG DT DG SEQRES 1 B 6 DC DA DC DG DT DG

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000