1UQ1 - Header Asymmetric Unit

HEADER OXIDOREDUCTASE 15-OCT-03 1UQ1

TITLE REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, MODELS 211- TITLE 2 280.

COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN 1; COMPND 3 CHAIN: G; COMPND 4 SYNONYM: GRX1; COMPND 5 OTHER_DETAILS: MODEL, 350 STRUCTURES FROM 75 NS MD COMPND 6 SIMULATION. THIS ENTRY HAS 70 MODELS. THE OTHER ENTRIES COMPND 7 ARE 1UPY, 1UQZ, 1UQ0 AND 1UQ2

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 OTHER_DETAILS: INITIAL MODEL COORDINATES TAKEN FROM 1EGR

KEYWDS ELECTRON TRANSPORT, OXIDOREDUCTASE, DEOXYRIBONUCLEOTIDE KEYWDS 2 SYNTHESIS

EXPDTA THEORETICAL MODEL

AUTHOR N.FOLOPPE,L.NILSSON

REVDAT 2 19-FEB-04 1UQ1 1 JRNL REVDAT 1 06-NOV-03 1UQ1 0

JRNL AUTH N.FOLOPPE,L.NILSSON JRNL TITL THE GLUTAREDOXIN-C-P-Y-C- MOTIF; INFLUENCE OF JRNL TITL 2 PERIPHERAL RESIDUES JRNL REF STRUCTURE V. 12 289 2004 JRNL REFN ASTM STRUE6 UK ISSN 0969-2126

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1UQ1 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 16-OCT-2003. REMARK 100 THE EBI ID CODE IS EBI-13720.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 400 REMARK 400 COMPOUND THE RESULTS OF THE SIMULATION ARE SPLIT ACROSS 5 REMARK 400 PDB ENTRIES. THIS IS PART 3 OF 5 (350 MODELS ALTOGETHER). REMARK 400 THIS ENTRY CONTAINS 70 MODELS OF THE TIME COURSE MD REMARK 400 SIMULATION. THE OTHER ENTRIES ARE AS FOLLOWS: 1UPY : MODELS REMARK 400 1 - 70 1UPZ : MODELS 71 - 140 1UQ2 : MODELS 281 - 350 REMARK 400 FUNCTION: THE DISULFIDE BOND FUNCTIONS AS AN ELECTRON REMARK 400 CARRIER IN THE GLUTATHIONE-DEPENDENT SYNTHESIS OF REMARK 400 DEOXYRIBONUCLEOTIDES BY T ENZYME RIBONUCLEOTIDE REDUCTASE. REMARK 400 IN ADDITION, IT IS ALSO INVOLVE IN REDUCING SOME DISULFIDES REMARK 400 IN A COUPLED SYSTEM WITH GLUTATHIONE REDUCTASE.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 211 ASP G 65 -102.13 49.78 REMARK 500 212 ASP G 65 -94.61 51.45 REMARK 500 214 ASP G 65 -107.02 60.30 REMARK 500 215 ASP G 65 -95.68 42.34 REMARK 500 216 ASP G 65 -105.06 55.66 REMARK 500 218 ASP G 65 -107.14 78.60 REMARK 500 220 ASP G 65 -108.40 49.76 REMARK 500 221 ASP G 65 -106.17 39.79 REMARK 500 222 ASP G 65 -100.96 70.16 REMARK 500 225 ASP G 65 -111.09 67.26 REMARK 500 227 ASP G 65 -88.88 62.07 REMARK 500 228 ASP G 65 -101.26 63.82 REMARK 500 229 ASP G 65 -111.64 59.50 REMARK 500 231 ASP G 65 -100.24 54.57 REMARK 500 232 ASP G 65 -112.21 49.88 REMARK 500 233 ASP G 65 -111.66 37.56 REMARK 500 234 ASP G 65 -89.34 59.65 REMARK 500 235 ASP G 65 -103.49 55.17 REMARK 500 236 ASP G 65 -111.99 34.42 REMARK 500 237 ASP G 65 -109.94 65.24 REMARK 500 238 ASP G 65 -93.58 57.13 REMARK 500 239 ASP G 65 -96.91 49.55 REMARK 500 240 ASP G 65 -106.04 58.64 REMARK 500 241 ASP G 65 -78.51 60.25 REMARK 500 243 ASP G 65 -114.00 43.58 REMARK 500 244 ASP G 65 -104.25 41.38 REMARK 500 245 ASP G 65 -80.29 55.04 REMARK 500 246 ASP G 65 -105.98 55.23 REMARK 500 247 ASP G 65 -90.63 54.09 REMARK 500 248 ASP G 65 -110.34 52.51 REMARK 500 249 ASP G 65 -105.95 57.44 REMARK 500 250 ASP G 65 -94.34 60.44 REMARK 500 251 ASP G 65 -113.37 44.74 REMARK 500 252 ASP G 65 -99.56 54.79 REMARK 500 253 ASP G 65 -96.57 64.54 REMARK 500 254 ASP G 65 -101.69 65.05 REMARK 500 255 ASP G 65 -105.85 63.60 REMARK 500 256 ASP G 65 -87.22 49.70 REMARK 500 257 ASP G 65 -93.83 60.48 REMARK 500 258 ASP G 65 -96.40 61.34 REMARK 500 259 ASP G 65 -89.32 59.31 REMARK 500 260 ASP G 65 -81.55 52.20 REMARK 500 261 ASP G 65 -106.08 59.39 REMARK 500 262 ASP G 65 -110.18 48.05 REMARK 500 263 ASP G 65 -110.49 66.82 REMARK 500 264 ASP G 65 -92.84 40.20 REMARK 500 265 ASP G 65 -105.26 69.03 REMARK 500 266 ASP G 65 -115.61 62.45 REMARK 500 267 ASP G 65 -93.41 44.68 REMARK 500 268 ASP G 65 -87.33 63.69 REMARK 500 269 ASP G 65 -91.28 62.19 REMARK 500 270 ASP G 65 -105.90 62.40 REMARK 500 271 ASP G 65 -103.69 72.32 REMARK 500 272 ASP G 65 -108.59 54.96 REMARK 500 273 ASP G 65 -94.04 57.53 REMARK 500 274 ASP G 65 -92.16 59.23 REMARK 500 276 ASP G 65 -103.93 62.37 REMARK 500 277 GLU G 57 -113.99 -175.47 REMARK 500 277 ASP G 65 -114.73 45.68 REMARK 500 278 ASP G 65 -94.71 61.53 REMARK 500 279 ASP G 65 -86.32 59.85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL G 64 ASP G 65 220 -149.37 REMARK 500 LYS G 54 PRO G 55 224 -148.41 REMARK 500 VAL G 59 PRO G 60 224 -43.10 REMARK 500 GLY G 71 TYR G 72 232 -146.87 REMARK 500 GLN G 50 LYS G 51 234 -149.85 REMARK 500 PHE G 63 VAL G 64 239 149.42 REMARK 500 ILE G 69 GLY G 70 260 -147.93

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CC REMARK 800 SITE_DESCRIPTION: CYS 11 (THIOLATE) AND CYS 14 ARE REMARK 800 THE ACTIVE CYSTEINS INVOLVED IN DISULFIDE FORMATION

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EGO RELATED DB: PDB REMARK 900 GLUTAREDOXIN (OXIDIZED) (NMR, 20 STRUCTURES) REMARK 900 RELATED ID: 1EGR RELATED DB: PDB REMARK 900 GLUTAREDOXIN (REDUCED) (NMR, 20 STRUCTURES) REMARK 900 RELATED ID: 1GRX RELATED DB: PDB REMARK 900 STRUCTURE OF E. COLI GLUTAREDOXIN REMARK 900 RELATED ID: 1QFN RELATED DB: PDB REMARK 900 GLUTAREDOXIN-1-RIBONUCLEOTIDE REDUCTASE B1 REMARK 900 MIXED DISULFIDE BOND REMARK 900 RELATED ID: 1UPY RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 1-70 REMARK 900 RELATED ID: 1UQ0 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 141-210 REMARK 900 RELATED ID: 1UQ2 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 281-350 REMARK 900 RELATED ID: 1UQ3 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 1-70 REMARK 900 RELATED ID: 1UQ6 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 141-210 REMARK 900 RELATED ID: 1UQ7 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 211-280

DBREF 1UQ1 G 1 85 UNP P00277 GLR1_ECOLI 1 85

SEQRES 1 G 85 MET GLN THR VAL ILE PHE GLY ARG SER GLY CYS PRO TYR SEQRES 2 G 85 CYS VAL ARG ALA LYS ASP LEU ALA GLU LYS LEU SER ASN SEQRES 3 G 85 GLU ARG ASP ASP PHE GLN TYR GLN TYR VAL ASP ILE ARG SEQRES 4 G 85 ALA GLU GLY ILE THR LYS GLU ASP LEU GLN GLN LYS ALA SEQRES 5 G 85 GLY LYS PRO VAL GLU THR VAL PRO GLN ILE PHE VAL ASP SEQRES 6 G 85 GLN GLN HIS ILE GLY GLY TYR THR ASP PHE ALA ALA TRP SEQRES 7 G 85 VAL LYS GLU ASN LEU ASP ALA

HELIX 1 1 CYS G 11 ARG G 28 1 18 HELIX 2 2 ASP G 37 GLY G 42 1 6 HELIX 3 3 THR G 44 GLY G 53 1 10 HELIX 4 4 GLY G 71 TRP G 78 1 8 HELIX 5 5 VAL G 79 LEU G 83 1 5

SHEET 1 GA 4 TYR G 33 VAL G 36 0 SHEET 2 GA 4 THR G 3 PHE G 6 1 O THR G 3 N GLN G 34 SHEET 3 GA 4 GLN G 61 VAL G 64 -1 O GLN G 61 N PHE G 6 SHEET 4 GA 4 GLN G 67 GLY G 70 -1 O GLN G 67 N VAL G 64

CISPEP 1 VAL G 59 PRO G 60 211 -11.21 CISPEP 2 VAL G 59 PRO G 60 212 -1.27 CISPEP 3 VAL G 59 PRO G 60 213 -13.87 CISPEP 4 VAL G 59 PRO G 60 214 -15.15 CISPEP 5 VAL G 59 PRO G 60 215 -24.73 CISPEP 6 VAL G 59 PRO G 60 216 12.18 CISPEP 7 VAL G 59 PRO G 60 217 -4.74 CISPEP 8 VAL G 59 PRO G 60 218 -10.02 CISPEP 9 VAL G 59 PRO G 60 219 -2.01 CISPEP 10 VAL G 59 PRO G 60 220 -2.17 CISPEP 11 VAL G 59 PRO G 60 221 -8.48 CISPEP 12 VAL G 59 PRO G 60 222 -20.22 CISPEP 13 VAL G 59 PRO G 60 223 -23.34 CISPEP 14 VAL G 59 PRO G 60 225 -14.48 CISPEP 15 VAL G 59 PRO G 60 226 -20.42 CISPEP 16 VAL G 59 PRO G 60 227 -8.04 CISPEP 17 VAL G 59 PRO G 60 228 -25.25 CISPEP 18 VAL G 59 PRO G 60 229 -8.19 CISPEP 19 VAL G 59 PRO G 60 230 -16.45 CISPEP 20 VAL G 59 PRO G 60 231 -19.23 CISPEP 21 VAL G 59 PRO G 60 232 -26.72 CISPEP 22 VAL G 59 PRO G 60 233 -11.95 CISPEP 23 VAL G 59 PRO G 60 234 -21.82 CISPEP 24 VAL G 59 PRO G 60 235 -11.93 CISPEP 25 VAL G 59 PRO G 60 236 -4.05 CISPEP 26 VAL G 59 PRO G 60 237 -27.00 CISPEP 27 VAL G 59 PRO G 60 238 -0.04 CISPEP 28 VAL G 59 PRO G 60 239 -19.82 CISPEP 29 VAL G 59 PRO G 60 240 -7.46 CISPEP 30 VAL G 59 PRO G 60 241 -13.51 CISPEP 31 VAL G 59 PRO G 60 242 22.38 CISPEP 32 VAL G 59 PRO G 60 243 -14.32 CISPEP 33 VAL G 59 PRO G 60 244 -5.42 CISPEP 34 VAL G 59 PRO G 60 245 -28.29 CISPEP 35 VAL G 59 PRO G 60 246 -9.73 CISPEP 36 VAL G 59 PRO G 60 247 -16.32 CISPEP 37 VAL G 59 PRO G 60 248 -20.84 CISPEP 38 VAL G 59 PRO G 60 249 -16.06 CISPEP 39 VAL G 59 PRO G 60 250 -6.17 CISPEP 40 VAL G 59 PRO G 60 251 -9.30 CISPEP 41 VAL G 59 PRO G 60 252 1.53 CISPEP 42 VAL G 59 PRO G 60 253 10.82 CISPEP 43 VAL G 59 PRO G 60 254 15.96 CISPEP 44 VAL G 59 PRO G 60 255 -7.77 CISPEP 45 VAL G 59 PRO G 60 256 -11.75 CISPEP 46 VAL G 59 PRO G 60 257 -10.31 CISPEP 47 VAL G 59 PRO G 60 258 -19.37 CISPEP 48 VAL G 59 PRO G 60 259 6.20 CISPEP 49 VAL G 59 PRO G 60 260 2.54 CISPEP 50 VAL G 59 PRO G 60 261 3.40 CISPEP 51 VAL G 59 PRO G 60 262 -0.85 CISPEP 52 VAL G 59 PRO G 60 263 7.28 CISPEP 53 VAL G 59 PRO G 60 264 11.93 CISPEP 54 VAL G 59 PRO G 60 265 -8.61 CISPEP 55 VAL G 59 PRO G 60 266 13.12 CISPEP 56 VAL G 59 PRO G 60 267 5.69 CISPEP 57 VAL G 59 PRO G 60 268 -0.35 CISPEP 58 VAL G 59 PRO G 60 269 -6.69 CISPEP 59 VAL G 59 PRO G 60 270 10.93 CISPEP 60 VAL G 59 PRO G 60 271 -8.64 CISPEP 61 VAL G 59 PRO G 60 272 17.53 CISPEP 62 VAL G 59 PRO G 60 273 -4.75 CISPEP 63 VAL G 59 PRO G 60 274 5.42 CISPEP 64 VAL G 59 PRO G 60 275 -19.11 CISPEP 65 VAL G 59 PRO G 60 276 -16.27 CISPEP 66 VAL G 59 PRO G 60 277 7.13 CISPEP 67 VAL G 59 PRO G 60 278 4.09 CISPEP 68 VAL G 59 PRO G 60 279 -19.45 CISPEP 69 VAL G 59 PRO G 60 280 -4.00

SITE 1 CC 4 CYS G 11 PRO G 12 TYR G 13 CYS G 14

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000