1UQ0 - Header Asymmetric Unit

HEADER OXIDOREDUCTASE 15-OCT-03 1UQ0

TITLE REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY. MODELS 141- TITLE 2 210.

COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN 1; COMPND 3 CHAIN: G; COMPND 4 SYNONYM: GRX1; COMPND 5 OTHER_DETAILS: MODEL, 350 STRUCTURES FROM 75 NS MD COMPND 6 SIMULATION. THIS ENTRY HAS 70 MODELS. THE OTHER ENTRIES COMPND 7 ARE 1UPY, 1UPZ, 1UQ1 AND 1UQ2

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 OTHER_DETAILS: INITIAL MODEL COORDINATES TAKEN FROM 1EGR

KEYWDS ELECTRON TRANSPORT, OXIDOREDUCTASE, DEOXYRIBONUCLEOTIDE KEYWDS 2 SYNTHESIS

EXPDTA THEORETICAL MODEL

AUTHOR N.FOLOPPE,L.NILSSON

REVDAT 2 19-FEB-04 1UQ0 1 JRNL REVDAT 1 06-NOV-03 1UQ0 0

JRNL AUTH N.FOLOPPE,L.NILSSON JRNL TITL THE GLUTAREDOXIN-C-P-Y-C- MOTIF; INFLUENCE OF JRNL TITL 2 PERIPHERAL RESIDUES JRNL REF STRUCTURE V. 12 289 2004 JRNL REFN ASTM STRUE6 UK ISSN 0969-2126

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1UQ0 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 15-OCT-2003. REMARK 100 THE EBI ID CODE IS EBI-13719.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 400 REMARK 400 COMPOUND THE RESULTS OF THE SIMULATION ARE SPLIT ACROSS 5 REMARK 400 PDB ENTRIES. THIS IS PART 3 OF 5 (350 MODELS ALTOGETHER). REMARK 400 THIS ENTRY CONTAINS 70 MODELS OF THE TIME COURSE MD REMARK 400 SIMULATION. THE OTHER ENTRIES ARE AS FOLLOWS: 1UPY : MODELS REMARK 400 1 - 70 1UQZ : MODELS 71 - 140 1UQ1 : MODELS 211 - 280 1UQ2 REMARK 400 : MODELS 281 - 350 FUNCTION: THE DISULFIDE BOND FUNCTIONS REMARK 400 AS AN ELECTRON CARRIER IN THE GLUTATHIONE-DEPENDENT REMARK 400 SYNTHESIS OF DEOXYRIBONUCLEOTIDES BY T ENZYME REMARK 400 RIBONUCLEOTIDE REDUCTASE. IN ADDITION, IT IS ALSO INVOLVE REMARK 400 IN REDUCING SOME DISULFIDES IN A COUPLED SYSTEM WITH REMARK 400 GLUTATHIONE REDUCTASE.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 141 ASP G 65 -108.31 57.53 REMARK 500 142 ASP G 65 -101.14 49.61 REMARK 500 144 ASP G 65 -81.88 58.47 REMARK 500 145 ASP G 65 -116.23 43.18 REMARK 500 146 ASP G 65 -77.80 40.74 REMARK 500 147 ASP G 65 -117.35 53.55 REMARK 500 148 ASP G 65 -90.30 72.49 REMARK 500 149 ASP G 65 -104.86 55.63 REMARK 500 150 ASP G 65 -84.28 53.74 REMARK 500 151 ASP G 65 -65.95 68.88 REMARK 500 152 ASP G 65 -96.87 58.64 REMARK 500 153 ASP G 65 -94.20 59.59 REMARK 500 154 ASP G 65 -95.62 61.80 REMARK 500 155 ASP G 65 -78.64 40.33 REMARK 500 156 ASP G 65 -87.42 67.78 REMARK 500 157 ASP G 65 -114.73 57.40 REMARK 500 158 ASP G 65 -113.17 59.62 REMARK 500 159 ASP G 65 -106.91 59.68 REMARK 500 160 ASP G 65 -91.87 67.86 REMARK 500 161 ASP G 65 -100.62 47.01 REMARK 500 162 ASP G 65 -103.45 48.86 REMARK 500 163 ASP G 65 -64.05 69.20 REMARK 500 164 ASP G 65 -115.64 53.77 REMARK 500 165 ASP G 65 -81.12 63.90 REMARK 500 166 ASP G 65 -110.25 52.38 REMARK 500 167 ASP G 65 -95.60 54.03 REMARK 500 168 ASP G 65 -96.79 73.45 REMARK 500 169 ASP G 65 -118.44 65.89 REMARK 500 170 ASP G 65 -110.75 42.28 REMARK 500 171 ASP G 65 -107.22 62.29 REMARK 500 172 ASP G 65 -102.02 66.69 REMARK 500 173 ASP G 65 -88.26 56.20 REMARK 500 174 ASP G 65 -102.58 67.04 REMARK 500 175 ASP G 65 -102.14 52.08 REMARK 500 176 ASP G 65 -88.32 63.74 REMARK 500 177 ASP G 65 -94.21 67.08 REMARK 500 178 ASP G 65 -95.16 56.07 REMARK 500 179 ASP G 65 -75.74 40.59 REMARK 500 180 ASP G 65 -99.56 51.89 REMARK 500 181 ASP G 65 -112.63 58.23 REMARK 500 182 ASP G 65 -107.43 47.23 REMARK 500 183 ASP G 65 -101.43 58.43 REMARK 500 184 ASP G 65 -118.77 67.23 REMARK 500 185 ASP G 65 -91.51 55.66 REMARK 500 186 ASP G 65 -107.19 55.01 REMARK 500 187 ASP G 65 -79.18 60.18 REMARK 500 188 ASP G 65 -77.72 45.62 REMARK 500 190 ASP G 65 -97.19 51.84 REMARK 500 191 ASP G 65 -97.30 42.75 REMARK 500 192 ASP G 65 -107.27 42.26 REMARK 500 193 ASP G 65 -100.76 52.22 REMARK 500 194 ASP G 65 -108.62 49.18 REMARK 500 195 ASP G 65 -109.63 47.26 REMARK 500 196 ASP G 65 -101.39 39.43 REMARK 500 197 ASP G 65 -103.44 46.27 REMARK 500 198 ASP G 65 -115.14 73.10 REMARK 500 199 ASP G 65 -88.79 48.41 REMARK 500 200 ASP G 65 -104.49 50.18 REMARK 500 201 ASP G 65 -110.81 77.49 REMARK 500 202 ASP G 65 -88.59 35.29 REMARK 500 203 ASP G 65 -91.77 66.00 REMARK 500 204 ASP G 65 -103.93 66.85 REMARK 500 205 ASP G 65 -109.23 54.89 REMARK 500 206 ASP G 65 -80.64 54.60 REMARK 500 207 ASP G 65 -113.79 51.76 REMARK 500 208 ASP G 65 -100.84 47.57 REMARK 500 209 ASP G 65 -83.99 62.14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU G 57 THR G 58 147 -140.76 REMARK 500 PHE G 63 VAL G 64 150 148.31 REMARK 500 VAL G 59 PRO G 60 154 -30.03 REMARK 500 GLU G 27 ARG G 28 182 -146.34 REMARK 500 ASP G 37 ILE G 38 205 -148.49

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CC REMARK 800 SITE_DESCRIPTION: CYS 11 (THIOLATE) AND CYS 14 ARE REMARK 800 THE ACTIVE CYSTEINS INVOLVED IN DISULFIDE FORMATION

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EGO RELATED DB: PDB REMARK 900 GLUTAREDOXIN (OXIDIZED) (NMR, 20 STRUCTURES) REMARK 900 RELATED ID: 1EGR RELATED DB: PDB REMARK 900 GLUTAREDOXIN (REDUCED) (NMR, 20 STRUCTURES) REMARK 900 RELATED ID: 1GRX RELATED DB: PDB REMARK 900 STRUCTURE OF E. COLI GLUTAREDOXIN REMARK 900 RELATED ID: 1QFN RELATED DB: PDB REMARK 900 GLUTAREDOXIN-1-RIBONUCLEOTIDE REDUCTASE B1 REMARK 900 MIXED DISULFIDE BOND REMARK 900 RELATED ID: 1UPY RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 1-70 REMARK 900 RELATED ID: 1UPZ RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 71-140 REMARK 900 RELATED ID: 1UQ1 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 211-280 REMARK 900 RELATED ID: 1UQ2 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 281-350 REMARK 900 RELATED ID: 1UQ3 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 1-70 REMARK 900 RELATED ID: 1UQ6 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 141-210 REMARK 900 RELATED ID: 1UQ7 RELATED DB: PDB REMARK 900 REDUCED GLUTAREDOXIN 1 SIMULATION TRAJECTORY, REMARK 900 MODELS 211-280

DBREF 1UQ0 G 1 85 UNP P00277 GLR1_ECOLI 1 85

SEQRES 1 G 85 MET GLN THR VAL ILE PHE GLY ARG SER GLY CYS PRO TYR SEQRES 2 G 85 CYS VAL ARG ALA LYS ASP LEU ALA GLU LYS LEU SER ASN SEQRES 3 G 85 GLU ARG ASP ASP PHE GLN TYR GLN TYR VAL ASP ILE ARG SEQRES 4 G 85 ALA GLU GLY ILE THR LYS GLU ASP LEU GLN GLN LYS ALA SEQRES 5 G 85 GLY LYS PRO VAL GLU THR VAL PRO GLN ILE PHE VAL ASP SEQRES 6 G 85 GLN GLN HIS ILE GLY GLY TYR THR ASP PHE ALA ALA TRP SEQRES 7 G 85 VAL LYS GLU ASN LEU ASP ALA

HELIX 1 1 CYS G 14 ARG G 28 1 15 HELIX 2 2 ARG G 39 ILE G 43 1 5 HELIX 3 3 THR G 44 ALA G 52 1 9 HELIX 4 4 GLY G 71 TRP G 78 1 8 HELIX 5 5 VAL G 79 LEU G 83 1 5

SHEET 1 GA 4 GLN G 32 ASP G 37 0 SHEET 2 GA 4 GLN G 2 GLY G 7 1 O THR G 3 N GLN G 34 SHEET 3 GA 4 GLN G 61 VAL G 64 -1 O GLN G 61 N PHE G 6 SHEET 4 GA 4 GLN G 67 GLY G 70 -1 O GLN G 67 N VAL G 64

CISPEP 1 VAL G 59 PRO G 60 141 -9.72 CISPEP 2 VAL G 59 PRO G 60 142 -4.50 CISPEP 3 VAL G 59 PRO G 60 143 -11.11 CISPEP 4 VAL G 59 PRO G 60 144 -7.53 CISPEP 5 VAL G 59 PRO G 60 145 -17.26 CISPEP 6 VAL G 59 PRO G 60 146 -21.01 CISPEP 7 VAL G 59 PRO G 60 147 -15.29 CISPEP 8 VAL G 59 PRO G 60 148 -11.59 CISPEP 9 VAL G 59 PRO G 60 149 -23.78 CISPEP 10 VAL G 59 PRO G 60 150 21.97 CISPEP 11 VAL G 59 PRO G 60 151 -21.93 CISPEP 12 VAL G 59 PRO G 60 152 -14.88 CISPEP 13 VAL G 59 PRO G 60 153 -22.54 CISPEP 14 VAL G 59 PRO G 60 155 -7.33 CISPEP 15 VAL G 59 PRO G 60 156 -16.09 CISPEP 16 VAL G 59 PRO G 60 157 -2.13 CISPEP 17 VAL G 59 PRO G 60 158 -29.11 CISPEP 18 VAL G 59 PRO G 60 159 -1.98 CISPEP 19 VAL G 59 PRO G 60 160 3.92 CISPEP 20 VAL G 59 PRO G 60 161 -10.33 CISPEP 21 VAL G 59 PRO G 60 162 -21.75 CISPEP 22 VAL G 59 PRO G 60 163 -16.35 CISPEP 23 VAL G 59 PRO G 60 164 -20.58 CISPEP 24 VAL G 59 PRO G 60 165 -15.38 CISPEP 25 VAL G 59 PRO G 60 166 -3.83 CISPEP 26 VAL G 59 PRO G 60 167 -11.60 CISPEP 27 VAL G 59 PRO G 60 168 5.52 CISPEP 28 VAL G 59 PRO G 60 169 -4.50 CISPEP 29 VAL G 59 PRO G 60 170 5.74 CISPEP 30 VAL G 59 PRO G 60 171 2.57 CISPEP 31 VAL G 59 PRO G 60 172 -7.45 CISPEP 32 VAL G 59 PRO G 60 173 -17.85 CISPEP 33 VAL G 59 PRO G 60 174 -2.40 CISPEP 34 VAL G 59 PRO G 60 175 -6.43 CISPEP 35 VAL G 59 PRO G 60 176 0.15 CISPEP 36 VAL G 59 PRO G 60 177 -17.34 CISPEP 37 VAL G 59 PRO G 60 178 -27.98 CISPEP 38 VAL G 59 PRO G 60 179 -19.60 CISPEP 39 VAL G 59 PRO G 60 180 -11.33 CISPEP 40 VAL G 59 PRO G 60 181 18.63 CISPEP 41 VAL G 59 PRO G 60 182 2.22 CISPEP 42 VAL G 59 PRO G 60 183 4.88 CISPEP 43 VAL G 59 PRO G 60 184 -16.13 CISPEP 44 VAL G 59 PRO G 60 185 -7.91 CISPEP 45 VAL G 59 PRO G 60 186 1.93 CISPEP 46 VAL G 59 PRO G 60 187 -18.61 CISPEP 47 VAL G 59 PRO G 60 188 -20.62 CISPEP 48 VAL G 59 PRO G 60 189 -9.40 CISPEP 49 VAL G 59 PRO G 60 190 -3.74 CISPEP 50 VAL G 59 PRO G 60 191 -14.31 CISPEP 51 VAL G 59 PRO G 60 192 -23.90 CISPEP 52 VAL G 59 PRO G 60 193 9.90 CISPEP 53 VAL G 59 PRO G 60 194 23.10 CISPEP 54 VAL G 59 PRO G 60 195 -3.42 CISPEP 55 VAL G 59 PRO G 60 196 24.98 CISPEP 56 VAL G 59 PRO G 60 197 2.23 CISPEP 57 VAL G 59 PRO G 60 198 3.99 CISPEP 58 VAL G 59 PRO G 60 199 3.37 CISPEP 59 VAL G 59 PRO G 60 200 14.82 CISPEP 60 VAL G 59 PRO G 60 201 -14.21 CISPEP 61 VAL G 59 PRO G 60 202 8.27 CISPEP 62 VAL G 59 PRO G 60 203 -5.32 CISPEP 63 VAL G 59 PRO G 60 204 -5.01 CISPEP 64 VAL G 59 PRO G 60 205 14.40 CISPEP 65 VAL G 59 PRO G 60 206 15.69 CISPEP 66 VAL G 59 PRO G 60 207 -8.70 CISPEP 67 VAL G 59 PRO G 60 208 12.22 CISPEP 68 VAL G 59 PRO G 60 209 13.10 CISPEP 69 VAL G 59 PRO G 60 210 -1.07

SITE 1 CC 4 CYS G 11 PRO G 12 TYR G 13 CYS G 14

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000