1UMS - Header Asymmetric Unit

HEADER COMPLEX (PROTEINASE/INHIBITOR) 31-OCT-95 1UMS

TITLE STROMELYSIN-1 CATALYTIC DOMAIN WITH HYDROPHOBIC INHIBITOR TITLE 2 BOUND, PH 7.0, 32OC, 20 MM CACL2, 15% ACETONITRILE; NMR TITLE 3 ENSEMBLE OF 20 STRUCTURES

COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMELYSIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN RESIDUES 83 - 256; COMPND 5 SYNONYM: MATRIX METALLOPROTEINASE-3, MMP-3; COMPND 6 EC: 3.4.24.17; COMPND 7 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HUMAN STROMELYSIN-1 CATALYTIC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEMEX-D; SOURCE 9 EXPRESSION_SYSTEM_GENE: HUMAN STROMELYSIN-1 CATALYTIC SOURCE 10 DOMAIN; SOURCE 11 OTHER_DETAILS: INDUCTION BY M13 WITH T7 RNA POLYMERASE

KEYWDS ZINC HYDROLASE, METZINCIN, MATRIX METALLOPROTEINASE, KEYWDS 2 COMPLEX (PROTEINASE/INHIBITOR) COMPLEX

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR S.R.VAN DOREN,A.V.KUROCHKIN,W.HU,E.R.P.ZUIDERWEG

REVDAT 3 24-FEB-09 1UMS 1 VERSN REVDAT 2 15-FEB-05 1UMS 1 JRNL HET REVDAT 1 08-MAR-96 1UMS 0

JRNL AUTH S.R.VAN DOREN,A.V.KUROCHKIN,W.HU,Q.Z.YE, JRNL AUTH 2 L.L.JOHNSON,D.J.HUPE,E.R.ZUIDERWEG JRNL TITL SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF JRNL TITL 2 HUMAN STROMELYSIN COMPLEXED WITH A HYDROPHOBIC JRNL TITL 3 INHIBITOR. JRNL REF PROTEIN SCI. V. 4 2487 1995 JRNL REFN ISSN 0961-8368 JRNL PMID 8580839

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.R.VAN DOREN,A.V.KUROCHKIN,Q.-Z.YE,L.L.JOHNSON, REMARK 1 AUTH 2 D.J.HUPE,E.R.P.ZUIDERWEG REMARK 1 TITL ASSIGNMENTS FOR THE MAIN-CHAIN NUCLEAR MAGNETIC REMARK 1 TITL 2 RESONANCES AND DELINEATION OF THE SECONDARY REMARK 1 TITL 3 STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN REMARK 1 TITL 4 STROMELYSIN-1 AS OBTAINED FROM TRIPLE-RESONANCE 3D REMARK 1 TITL 5 NMR EXPERIMENTS REMARK 1 REF BIOCHEMISTRY V. 32 13109 1993 REMARK 1 REFN ISSN 0006-2960

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DGII, DISCOVER REMARK 3 AUTHORS : HAVEL (DGII), BIOSYM TECHNOLOGIES, INC. REMARK 3 (DISCOVER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1UMS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 PRO A 249 REMARK 465 PRO A 250 REMARK 465 ASP A 251 REMARK 465 SER A 252 REMARK 465 PRO A 253 REMARK 465 GLU A 254 REMARK 465 THR A 255 REMARK 465 PRO A 256

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 205 NE2 REMARK 620 2 HAE A 261 O2 133.5 REMARK 620 3 HIS A 201 NE2 78.8 91.3 REMARK 620 4 HIS A 211 NE2 88.0 116.1 151.0 REMARK 620 5 HAE A 261 O 155.5 67.9 90.4 91.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 163 O REMARK 620 2 GLU A 184 OE1 114.2 REMARK 620 3 ASP A 158 OD1 62.7 132.5 REMARK 620 4 GLY A 159 N 144.9 61.6 93.6 REMARK 620 5 GLY A 159 O 158.9 53.9 138.4 50.1 REMARK 620 6 GLY A 161 O 117.0 110.1 112.1 95.2 61.2 REMARK 620 7 ASP A 181 OD2 79.2 58.8 75.0 69.3 103.5 163.7 REMARK 620 8 GLU A 184 OE2 74.7 43.8 126.2 104.6 87.3 115.9 65.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 151 NE2 REMARK 620 2 ASP A 153 OD2 77.7 REMARK 620 3 HIS A 166 NE2 126.6 125.9 REMARK 620 4 HIS A 179 ND1 94.0 92.9 126.1 REMARK 620 N 1 2 3

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: S1' REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 SITE_IDENTIFIER: S2' REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 SITE_IDENTIFIER: S3' REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 3 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOP A 257 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LEU A 258 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PHE A 259 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 260 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HAE A 261

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UMT RELATED DB: PDB

DBREF 1UMS A 83 256 UNP P08254 MM03_HUMAN 100 273

SEQRES 1 A 174 PHE ARG THR PHE PRO GLY ILE PRO LYS TRP ARG LYS THR SEQRES 2 A 174 HIS LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP LEU SEQRES 3 A 174 PRO LYS ASP ALA VAL ASP SER ALA VAL GLU LYS ALA LEU SEQRES 4 A 174 LYS VAL TRP GLU GLU VAL THR PRO LEU THR PHE SER ARG SEQRES 5 A 174 LEU TYR GLU GLY GLU ALA ASP ILE MET ILE SER PHE ALA SEQRES 6 A 174 VAL ARG GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 A 174 GLY ASN VAL LEU ALA HIS ALA TYR ALA PRO GLY PRO GLY SEQRES 8 A 174 ILE ASN GLY ASP ALA HIS PHE ASP ASP ASP GLU GLN TRP SEQRES 9 A 174 THR LYS ASP THR THR GLY THR ASN LEU PHE LEU VAL ALA SEQRES 10 A 174 ALA HIS GLU ILE GLY HIS SER LEU GLY LEU PHE HIS SER SEQRES 11 A 174 ALA ASN THR GLU ALA LEU MET TYR PRO LEU TYR HIS SER SEQRES 12 A 174 LEU THR ASP LEU THR ARG PHE ARG LEU SER GLN ASP ASP SEQRES 13 A 174 ILE ASN GLY ILE GLN SER LEU TYR GLY PRO PRO PRO ASP SEQRES 14 A 174 SER PRO GLU THR PRO

HET ZN A 1 1 HET ZN A 2 1 HET CA A 3 1 HET MOP A 257 17 HET LEU A 258 19 HET PHE A 259 20 HET NH2 A 260 3 HET HAE A 261 9

HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM MOP 4-METHYLPENTANAL HETNAM LEU LEUCINE HETNAM PHE PHENYLALANINE HETNAM NH2 AMINO GROUP HETNAM HAE ACETOHYDROXAMIC ACID

FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA CA 2+ FORMUL 5 MOP C6 H12 O FORMUL 5 LEU C6 H13 N O2 FORMUL 5 PHE C9 H11 N O2 FORMUL 5 NH2 H2 N FORMUL 6 HAE C2 H5 N O2

HELIX 1 A LYS A 110 VAL A 127 1AMPHIPATHIC 18 HELIX 2 B LEU A 195 SER A 206 1HIS LIGANDS TO CATALYTIC ZN 12 HELIX 3 C GLN A 236 TYR A 246 1 11

SHEET 1 A 5 THR A 131 ARG A 134 0 SHEET 2 A 5 HIS A 96 ILE A 101 1 N LEU A 97 O THR A 131 SHEET 3 A 5 ILE A 142 ALA A 147 1 O ILE A 142 N ARG A 100 SHEET 4 A 5 ASP A 177 ASP A 181 1 N ALA A 178 O MET A 143 SHEET 5 A 5 ALA A 165 TYR A 168 -1 N HIS A 166 O HIS A 179

LINK ZN ZN A 1 NE2 HIS A 205 1555 1555 2.31 LINK ZN ZN A 1 O2 HAE A 261 1555 1555 2.29 LINK ZN ZN A 1 NE2 HIS A 201 1555 1555 2.31 LINK ZN ZN A 1 NE2 HIS A 211 1555 1555 2.31 LINK ZN ZN A 1 O HAE A 261 1555 1555 2.29 LINK CA CA A 3 O VAL A 163 1555 1555 2.57 LINK CA CA A 3 OE1 GLU A 184 1555 1555 3.20 LINK CA CA A 3 OD1 ASP A 158 1555 1555 2.29 LINK CA CA A 3 N GLY A 159 1555 1555 3.37 LINK CA CA A 3 O GLY A 159 1555 1555 2.57 LINK CA CA A 3 O GLY A 161 1555 1555 2.59 LINK CA CA A 3 OD2 ASP A 181 1555 1555 2.32 LINK CA CA A 3 OE2 GLU A 184 1555 1555 2.29 LINK C2 MOP A 257 C1 HAE A 261 1555 1555 1.54 LINK C1 MOP A 257 N LEU A 258 1555 1555 1.35 LINK C LEU A 258 N PHE A 259 1555 1555 1.35 LINK C PHE A 259 N NH2 A 260 1555 1555 1.34 LINK NE2 HIS A 151 ZN ZN A 2 1555 1555 2.32 LINK OD2 ASP A 153 ZN ZN A 2 1555 1555 2.29 LINK NE2 HIS A 166 ZN ZN A 2 1555 1555 2.32 LINK ND1 HIS A 179 ZN ZN A 2 1555 1555 2.31

CISPEP 1 PHE A 86 PRO A 87 1 -19.15 CISPEP 2 LEU A 108 PRO A 109 1 18.89 CISPEP 3 PHE A 86 PRO A 87 2 -9.98 CISPEP 4 PHE A 86 PRO A 87 3 -11.61 CISPEP 5 PHE A 86 PRO A 87 5 -11.22 CISPEP 6 PHE A 86 PRO A 87 6 -20.84 CISPEP 7 PHE A 86 PRO A 87 7 -18.38 CISPEP 8 GLY A 171 PRO A 172 7 12.25 CISPEP 9 PHE A 86 PRO A 87 8 -13.34 CISPEP 10 ILE A 89 PRO A 90 9 -10.63 CISPEP 11 PHE A 86 PRO A 87 10 -19.26 CISPEP 12 PHE A 86 PRO A 87 11 -12.03 CISPEP 13 PHE A 86 PRO A 87 12 -10.56 CISPEP 14 PHE A 86 PRO A 87 13 -9.26 CISPEP 15 PHE A 86 PRO A 87 14 -8.59 CISPEP 16 PHE A 86 PRO A 87 15 -8.28 CISPEP 17 PHE A 86 PRO A 87 16 -13.96 CISPEP 18 PHE A 86 PRO A 87 17 2.72 CISPEP 19 GLY A 171 PRO A 172 17 -5.87 CISPEP 20 PHE A 86 PRO A 87 18 -10.69 CISPEP 21 TYR A 155 PRO A 156 18 -13.28 CISPEP 22 GLY A 171 PRO A 172 18 -15.86 CISPEP 23 PHE A 86 PRO A 87 19 -22.25 CISPEP 24 PHE A 86 PRO A 87 20 -14.61

SITE 1 S1' 6 LEU A 164 VAL A 198 HIS A 201 PRO A 221 SITE 2 S1' 6 LEU A 222 TYR A 223 SITE 1 S2' 5 ASN A 162 VAL A 163 LEU A 164 ALA A 165 SITE 2 S2' 5 LEU A 222 SITE 1 S3' 4 LEU A 164 THR A 193 LEU A 222 TYR A 223 SITE 1 AC1 5 TYR A 155 HIS A 201 HIS A 205 HIS A 211 SITE 2 AC1 5 HAE A 261 SITE 1 AC2 4 HIS A 151 ASP A 153 HIS A 166 HIS A 179 SITE 1 AC3 7 ASP A 158 GLY A 159 GLY A 161 ASN A 162 SITE 2 AC3 7 VAL A 163 ASP A 181 GLU A 184 SITE 1 AC4 8 TYR A 155 VAL A 163 HIS A 201 PRO A 221 SITE 2 AC4 8 LEU A 222 TYR A 223 LEU A 258 HAE A 261 SITE 1 AC5 9 TYR A 155 PRO A 156 VAL A 163 PRO A 221 SITE 2 AC5 9 LEU A 222 MOP A 257 PHE A 259 NH2 A 260 SITE 3 AC5 9 HAE A 261 SITE 1 AC6 7 ASN A 162 VAL A 163 LEU A 222 TYR A 223 SITE 2 AC6 7 HIS A 224 LEU A 258 NH2 A 260 SITE 1 AC7 3 ASN A 162 LEU A 258 PHE A 259 SITE 1 AC8 7 ZN A 1 TYR A 155 HIS A 201 HIS A 211 SITE 2 AC8 7 PRO A 221 MOP A 257 LEU A 258

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000