10 20 30 40 50 60 70 80 1UM7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 24-SEP-03 1UM7
TITLE SOLUTION STRUCTURE OF THE THIRD PDZ DOMAIN OF SYNAPSE- TITLE 2 ASSOCIATED PROTEIN 102
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPSE-ASSOCIATED PROTEIN 102; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: KIAA1232 PROTEIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA KIAA1232; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P021030-42; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS PDZ, DISCS LARGE HOMOLOG 3, DLG3-HUMAN PRESYNAPTIC PROTEIN, KEYWDS 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 3 STRUCTURAL GENOMICS, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.-R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1UM7 1 VERSN REVDAT 1 24-MAR-04 1UM7 0
JRNL AUTH X.-R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD PDZ DOMAIN OF JRNL TITL 2 SYNAPSE-ASSOCIATED PROTEIN 102 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1UM7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-03. REMARK 100 THE RCSB ID CODE IS RCSB005981.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.05MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM PHOSPHATE REMARK 210 BUFFER; 100MM NACL; 1MM D10- REMARK 210 DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20020425, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.854 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 12 83.24 40.32 REMARK 500 1 ALA A 13 59.66 -94.98 REMARK 500 1 GLU A 15 173.85 -55.45 REMARK 500 1 SER A 25 -64.28 177.18 REMARK 500 1 GLU A 57 -65.70 -130.09 REMARK 500 1 ASN A 68 -56.01 79.47 REMARK 500 1 ALA A 87 -142.37 -65.84 REMARK 500 1 TYR A 97 95.15 -52.13 REMARK 500 1 SER A 108 137.85 63.48 REMARK 500 1 SER A 111 79.01 -179.04 REMARK 500 2 SER A 2 98.14 -179.55 REMARK 500 2 SER A 5 -60.36 -142.50 REMARK 500 2 SER A 6 97.55 54.49 REMARK 500 2 ALA A 13 76.69 69.75 REMARK 500 2 SER A 25 -60.46 -173.19 REMARK 500 2 ASP A 37 27.10 45.94 REMARK 500 2 GLU A 57 -75.25 -97.00 REMARK 500 2 ASP A 62 166.68 -47.63 REMARK 500 2 ALA A 87 -142.31 -65.79 REMARK 500 2 TYR A 97 96.84 -58.42 REMARK 500 2 SER A 107 -60.95 -95.79 REMARK 500 2 SER A 108 151.02 67.66 REMARK 500 2 SER A 111 82.02 -169.12 REMARK 500 2 SER A 112 132.67 63.31 REMARK 500 3 LYS A 23 111.90 -39.98 REMARK 500 3 SER A 25 -38.82 -175.81 REMARK 500 3 PHE A 45 165.33 178.77 REMARK 500 3 ASP A 62 153.24 -42.53 REMARK 500 3 ASN A 68 19.43 52.28 REMARK 500 3 ALA A 87 -141.10 -69.05 REMARK 500 3 TYR A 97 97.08 -56.53 REMARK 500 3 SER A 111 165.81 178.14 REMARK 500 4 SER A 5 160.74 -40.63 REMARK 500 4 ARG A 14 -44.42 -131.10 REMARK 500 4 LYS A 23 118.56 -39.73 REMARK 500 4 SER A 25 -59.49 -176.66 REMARK 500 4 GLU A 57 -74.36 -75.51 REMARK 500 4 ASP A 62 173.96 -48.19 REMARK 500 4 ASN A 68 29.15 39.63 REMARK 500 4 ALA A 87 -142.27 -66.05 REMARK 500 4 TYR A 97 93.78 -60.78 REMARK 500 4 SER A 111 84.84 64.79 REMARK 500 5 SER A 2 157.32 60.65 REMARK 500 5 SER A 5 171.83 67.91 REMARK 500 5 ALA A 13 85.60 61.18 REMARK 500 5 ARG A 14 -44.83 -134.43 REMARK 500 5 LYS A 23 101.54 -38.27 REMARK 500 5 THR A 26 23.21 47.51 REMARK 500 5 PHE A 30 148.24 -170.23 REMARK 500 5 PHE A 45 166.56 177.93 REMARK 500 5 ASN A 68 28.84 40.10 REMARK 500 5 ALA A 87 -144.74 -71.18 REMARK 500 5 TYR A 97 95.51 -52.32 REMARK 500 6 SER A 3 100.78 -164.70 REMARK 500 6 SER A 5 108.17 176.61 REMARK 500 6 SER A 6 -56.43 -176.71 REMARK 500 6 ARG A 8 151.78 -38.61 REMARK 500 6 ALA A 13 64.52 67.74 REMARK 500 6 SER A 25 -62.21 -172.16 REMARK 500 6 ASP A 37 28.82 43.82 REMARK 500 6 ASN A 74 39.83 -97.45 REMARK 500 6 ALA A 87 -141.47 -73.45 REMARK 500 6 TYR A 97 100.31 -57.14 REMARK 500 6 TYR A 102 -33.75 -36.75 REMARK 500 6 SER A 112 94.07 61.89 REMARK 500 7 SER A 3 79.54 -171.92 REMARK 500 7 GLU A 15 173.49 -57.79 REMARK 500 7 SER A 25 -55.07 -160.34 REMARK 500 7 ASP A 37 -49.93 82.67 REMARK 500 7 PHE A 45 162.96 178.23 REMARK 500 7 LEU A 47 153.73 -48.76 REMARK 500 7 ILE A 64 98.92 -68.58 REMARK 500 7 ASN A 68 28.93 39.78 REMARK 500 7 ARG A 73 -35.51 -36.99 REMARK 500 7 ALA A 87 -140.63 -63.51 REMARK 500 7 TYR A 97 94.15 -59.96 REMARK 500 7 TYR A 102 -36.03 -37.29 REMARK 500 7 SER A 112 -76.09 68.84 REMARK 500 8 SER A 2 107.04 -170.02 REMARK 500 8 ARG A 8 155.48 64.98 REMARK 500 8 ASP A 12 33.94 -170.46 REMARK 500 8 ALA A 13 -111.06 -177.78 REMARK 500 8 ARG A 14 -49.77 74.07 REMARK 500 8 SER A 25 -45.16 -161.50 REMARK 500 8 LEU A 28 -71.89 -63.21 REMARK 500 8 ASN A 68 -55.50 75.00 REMARK 500 8 ALA A 87 -143.35 -70.90 REMARK 500 8 TYR A 97 97.04 -54.65 REMARK 500 8 SER A 112 156.73 67.85 REMARK 500 9 SER A 5 163.59 179.67 REMARK 500 9 SER A 6 156.77 179.72 REMARK 500 9 ASP A 12 39.30 -145.28 REMARK 500 9 ALA A 13 67.55 -177.14 REMARK 500 9 ARG A 14 -45.91 -136.89 REMARK 500 9 SER A 25 -78.03 176.31 REMARK 500 9 ASP A 62 153.95 -48.24 REMARK 500 9 ASN A 68 21.96 49.10 REMARK 500 9 ALA A 87 -143.19 -70.54 REMARK 500 9 TYR A 97 95.39 -51.48 REMARK 500 10 SER A 2 149.44 -176.49 REMARK 500 10 SER A 3 169.88 179.80 REMARK 500 10 ARG A 8 157.12 61.94 REMARK 500 10 ALA A 13 90.91 65.47 REMARK 500 10 ARG A 14 -59.28 -125.86 REMARK 500 10 GLU A 15 173.95 -51.58 REMARK 500 10 SER A 25 -50.23 -164.31 REMARK 500 10 ASN A 71 103.54 -53.65 REMARK 500 10 ARG A 73 -70.70 -37.72 REMARK 500 10 ASN A 74 41.58 -100.17 REMARK 500 10 ALA A 87 -140.82 -61.79 REMARK 500 10 TYR A 97 90.50 -59.26 REMARK 500 10 TYR A 102 -28.47 -38.73 REMARK 500 10 SER A 108 102.56 -53.07 REMARK 500 11 SER A 3 168.65 64.38 REMARK 500 11 SER A 5 123.12 175.74 REMARK 500 11 SER A 6 135.53 172.98 REMARK 500 11 ASP A 12 25.75 -148.67 REMARK 500 11 LYS A 23 111.92 -39.86 REMARK 500 11 SER A 25 -60.96 179.06 REMARK 500 11 LEU A 58 155.15 58.27 REMARK 500 11 ASN A 74 63.80 -119.08 REMARK 500 11 ALA A 87 -137.84 -66.50 REMARK 500 11 ARG A 98 88.18 176.56 REMARK 500 12 SER A 5 113.16 67.14 REMARK 500 12 LYS A 23 119.07 -39.33 REMARK 500 12 SER A 25 -64.66 172.00 REMARK 500 12 ASN A 68 29.35 39.43 REMARK 500 12 ARG A 73 -32.22 -37.22 REMARK 500 12 ALA A 87 -140.88 -75.87 REMARK 500 12 TYR A 97 95.57 -61.44 REMARK 500 12 TYR A 102 -35.62 -36.43 REMARK 500 12 SER A 103 -35.23 -39.24 REMARK 500 12 SER A 108 97.10 53.74 REMARK 500 12 SER A 112 -58.48 -169.76 REMARK 500 13 ASP A 12 31.25 -94.76 REMARK 500 13 ALA A 13 90.52 64.98 REMARK 500 13 ARG A 14 -61.22 -131.08 REMARK 500 13 GLU A 15 173.40 -48.03 REMARK 500 13 SER A 25 -50.83 -166.93 REMARK 500 13 PHE A 30 149.27 -177.90 REMARK 500 13 SER A 55 -39.54 -37.06 REMARK 500 13 GLU A 57 -69.45 -103.91 REMARK 500 13 ARG A 60 102.98 -51.91 REMARK 500 13 ASN A 74 62.66 -119.67 REMARK 500 13 ALA A 87 -143.15 -71.83 REMARK 500 13 TYR A 97 75.30 -100.45 REMARK 500 13 SER A 108 102.41 68.58 REMARK 500 14 SER A 3 -64.02 -154.19 REMARK 500 14 SER A 5 163.35 58.07 REMARK 500 14 ALA A 13 83.26 71.76 REMARK 500 14 ARG A 14 -56.37 -127.44 REMARK 500 14 GLU A 15 173.90 -47.48 REMARK 500 14 SER A 25 -56.95 -159.50 REMARK 500 14 ASN A 74 52.84 -103.99 REMARK 500 14 TYR A 97 91.19 -52.47 REMARK 500 14 TYR A 102 -27.84 -39.29 REMARK 500 14 SER A 111 -55.24 -163.18 REMARK 500 14 SER A 112 151.90 63.67 REMARK 500 15 ALA A 13 87.27 64.77 REMARK 500 15 GLU A 15 173.91 -49.85 REMARK 500 15 SER A 25 68.61 -105.72 REMARK 500 15 ASP A 37 -65.89 68.75 REMARK 500 15 GLU A 39 -83.41 -55.90 REMARK 500 15 PHE A 45 163.38 178.24 REMARK 500 15 LEU A 47 154.53 -40.40 REMARK 500 15 ASN A 68 29.19 39.57 REMARK 500 15 ASN A 74 41.54 -108.01 REMARK 500 15 ALA A 87 -144.08 -72.26 REMARK 500 15 TYR A 97 97.36 -51.83 REMARK 500 16 SER A 6 172.30 175.44 REMARK 500 16 PRO A 9 -164.21 -75.01 REMARK 500 16 ALA A 13 82.59 73.34 REMARK 500 16 ARG A 14 -44.51 -134.79 REMARK 500 16 LYS A 23 110.46 -39.19 REMARK 500 16 SER A 25 -57.57 -168.17 REMARK 500 16 ASP A 37 27.89 46.33 REMARK 500 16 ARG A 60 82.51 -66.41 REMARK 500 16 ASN A 68 29.94 39.12 REMARK 500 16 ARG A 73 -31.23 -38.23 REMARK 500 16 ALA A 87 -135.54 -65.90 REMARK 500 16 ARG A 98 92.04 177.42 REMARK 500 16 GLU A 101 -70.65 -52.00 REMARK 500 16 SER A 108 160.61 63.30 REMARK 500 17 SER A 3 152.44 61.29 REMARK 500 17 SER A 5 105.58 -167.73 REMARK 500 17 ALA A 13 -130.12 -119.95 REMARK 500 17 ARG A 14 -47.88 78.77 REMARK 500 17 LYS A 23 113.79 -38.60 REMARK 500 17 SER A 25 -69.35 -102.42 REMARK 500 17 THR A 26 40.54 -151.03 REMARK 500 17 PHE A 30 147.86 -172.94 REMARK 500 17 ASP A 37 27.70 45.00 REMARK 500 17 PHE A 45 166.99 177.20 REMARK 500 17 ASN A 68 30.04 38.80 REMARK 500 17 ALA A 87 -136.61 -64.50 REMARK 500 17 TYR A 97 150.67 -49.57 REMARK 500 17 ARG A 98 86.50 173.84 REMARK 500 17 SER A 112 -58.21 -130.81 REMARK 500 18 ARG A 8 129.86 62.85 REMARK 500 18 ASP A 12 79.71 39.15 REMARK 500 18 ALA A 13 70.33 -112.43 REMARK 500 18 GLU A 15 174.62 -46.59 REMARK 500 18 LYS A 23 114.76 -38.17 REMARK 500 18 THR A 26 25.22 -158.10 REMARK 500 18 PHE A 30 146.14 -177.54 REMARK 500 18 ASN A 68 29.08 39.64 REMARK 500 18 ARG A 73 -37.57 -37.12 REMARK 500 18 ALA A 87 -143.80 -72.69 REMARK 500 18 TYR A 97 97.33 -61.66 REMARK 500 18 SER A 112 84.81 39.35 REMARK 500 19 SER A 5 -57.44 75.40 REMARK 500 19 ARG A 8 140.23 66.05 REMARK 500 19 ASP A 12 83.62 40.62 REMARK 500 19 ALA A 13 69.49 -102.57 REMARK 500 19 SER A 25 -48.05 174.75 REMARK 500 19 ASP A 37 19.13 55.81 REMARK 500 19 SER A 55 -30.84 -38.33 REMARK 500 19 LEU A 58 135.96 61.13 REMARK 500 19 ARG A 60 86.63 -58.15 REMARK 500 19 ASN A 68 22.27 48.89 REMARK 500 19 ARG A 73 -30.14 -37.96 REMARK 500 19 ALA A 87 -140.31 -72.43 REMARK 500 19 TYR A 97 94.34 -59.28 REMARK 500 20 SER A 2 107.90 -166.59 REMARK 500 20 SER A 6 148.21 -175.14 REMARK 500 20 ALA A 13 71.55 68.10 REMARK 500 20 ARG A 14 -48.08 -138.71 REMARK 500 20 LYS A 23 109.54 -37.14 REMARK 500 20 SER A 25 75.07 -106.47 REMARK 500 20 THR A 26 29.60 46.30 REMARK 500 20 SER A 55 -33.13 -38.02 REMARK 500 20 GLU A 57 -64.32 -127.60 REMARK 500 20 ASN A 68 -39.04 72.34 REMARK 500 20 VAL A 70 -170.91 -53.08 REMARK 500 20 ASN A 74 25.65 -146.06 REMARK 500 20 TYR A 97 90.50 -53.66 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001206.1 RELATED DB: TARGETDB
DBREF 1UM7 A 8 107 UNP Q92796 DLG3_HUMAN 47 146
SEQADV 1UM7 GLY A 1 UNP Q92796 CLONING ARTIFACT SEQADV 1UM7 SER A 2 UNP Q92796 CLONING ARTIFACT SEQADV 1UM7 SER A 3 UNP Q92796 CLONING ARTIFACT SEQADV 1UM7 GLY A 4 UNP Q92796 CLONING ARTIFACT SEQADV 1UM7 SER A 5 UNP Q92796 CLONING ARTIFACT SEQADV 1UM7 SER A 6 UNP Q92796 CLONING ARTIFACT SEQADV 1UM7 GLY A 7 UNP Q92796 CLONING ARTIFACT SEQADV 1UM7 SER A 108 UNP Q92796 CLONING ARTIFACT SEQADV 1UM7 GLY A 109 UNP Q92796 CLONING ARTIFACT SEQADV 1UM7 PRO A 110 UNP Q92796 CLONING ARTIFACT SEQADV 1UM7 SER A 111 UNP Q92796 CLONING ARTIFACT SEQADV 1UM7 SER A 112 UNP Q92796 CLONING ARTIFACT SEQADV 1UM7 GLY A 113 UNP Q92796 CLONING ARTIFACT
SEQRES 1 A 113 GLY SER SER GLY SER SER GLY ARG PRO GLY GLY ASP ALA SEQRES 2 A 113 ARG GLU PRO ARG LYS ILE ILE LEU HIS LYS GLY SER THR SEQRES 3 A 113 GLY LEU GLY PHE ASN ILE VAL GLY GLY GLU ASP GLY GLU SEQRES 4 A 113 GLY ILE PHE VAL SER PHE ILE LEU ALA GLY GLY PRO ALA SEQRES 5 A 113 ASP LEU SER GLY GLU LEU ARG ARG GLY ASP ARG ILE LEU SEQRES 6 A 113 SER VAL ASN GLY VAL ASN LEU ARG ASN ALA THR HIS GLU SEQRES 7 A 113 GLN ALA ALA ALA ALA LEU LYS ARG ALA GLY GLN SER VAL SEQRES 8 A 113 THR ILE VAL ALA GLN TYR ARG PRO GLU GLU TYR SER ARG SEQRES 9 A 113 PHE GLU SER SER GLY PRO SER SER GLY
HELIX 1 1 GLY A 50 SER A 55 1 6 HELIX 2 2 THR A 76 ARG A 86 1 11 HELIX 3 3 ARG A 98 SER A 108 1 11
SHEET 1 A 3 PRO A 16 HIS A 22 0 SHEET 2 A 3 SER A 90 GLN A 96 -1 O ALA A 95 N ARG A 17 SHEET 3 A 3 ARG A 63 VAL A 67 -1 N SER A 66 O VAL A 94
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000