10 20 30 40 50 60 70 80 1UJY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 12-AUG-03 1UJY
TITLE SOLUTION STRUCTURE OF SH3 DOMAIN IN RAC/CDC42 GUANINE TITLE 2 NUCLEOTIDE EXCHANGE FACTOR(GEF) 6
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: RAC/CDC42 GUANINE NUCLEOTIDE EXCHANGE FACTOR 6, COMPND 6 GEF 6; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA HA01154; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P021021-16; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS NMR, STRUCTURAL GENOMICS, SH3 DOMAIN, GEF 6, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING KEYWDS 3 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR F.HE,Y.MUTO,H.UDA,S.KOSHIBA,M.SHIROUZU,T.TERADA,T.KIGAWA, AUTHOR 2 M.INOUE,T.YABUKI,M.AOKI,E.SEKI,T.MATSUDA,H.HIROTA,M.YOSHIDA, AUTHOR 3 N.KOBAYASHI,A.TANAKA,T.OSANAI,Y.MATSUO,O.OHARA,T.NAGASE, AUTHOR 4 R.KIKUNO,M.NAGAYAMA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 5 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1UJY 1 VERSN REVDAT 1 12-FEB-04 1UJY 0
JRNL AUTH F.HE,Y.MUTO,H.UDA,S.KOSHIBA,M.SHIROUZU,T.TERADA, JRNL AUTH 2 T.KIGAWA,M.INOUE,T.YABUKI,M.AOKI,E.SEKI,T.MATSUDA, JRNL AUTH 3 H.HIROTA,M.YOSHIDA,N.KOBAYASHI,A.TANAKA,T.OSANAI, JRNL AUTH 4 Y.MATSUO,O.OHARA,T.NAGASE,R.KIKUNO,M.NAGAYAMA, JRNL AUTH 5 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF SH3 DOMAIN IN RAC/CDC42 JRNL TITL 2 GUANINE NUCLEOTIDE EXCHANGE FACTOR(GEF) 6 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUENTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1UJY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-AUG-03. REMARK 100 THE RCSB ID CODE IS RCSB005910.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM SH3 U-15N, 13C; 20MM REMARK 210 PHOSPHATE BUFFER NA; 100MM REMARK 210 NACL; 0.02% NAN3; 90%H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.811, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -58.66 -145.22 REMARK 500 1 SER A 3 87.11 41.19 REMARK 500 1 ASN A 18 103.62 -59.45 REMARK 500 1 CYS A 30 -79.65 -116.31 REMARK 500 1 ARG A 39 -72.75 -70.83 REMARK 500 1 VAL A 40 77.81 75.39 REMARK 500 1 ASN A 51 92.54 -47.20 REMARK 500 1 SER A 74 -69.10 73.90 REMARK 500 1 SER A 75 -56.15 -158.23 REMARK 500 2 SER A 2 97.92 -174.67 REMARK 500 2 SER A 5 85.11 60.29 REMARK 500 2 SER A 8 156.66 64.55 REMARK 500 2 ASN A 18 100.24 -53.05 REMARK 500 2 CYS A 30 -77.21 -108.46 REMARK 500 2 ARG A 39 -70.12 -65.45 REMARK 500 2 VAL A 40 78.68 68.97 REMARK 500 2 ASN A 51 91.44 -46.02 REMARK 500 2 SER A 74 106.08 58.94 REMARK 500 3 SER A 2 109.35 66.33 REMARK 500 3 SER A 3 102.22 -172.81 REMARK 500 3 ALA A 15 -172.38 -55.97 REMARK 500 3 ARG A 16 -49.56 -130.91 REMARK 500 3 CYS A 30 -79.19 -112.84 REMARK 500 3 ARG A 39 -72.59 -69.34 REMARK 500 3 VAL A 40 78.68 75.91 REMARK 500 3 ASN A 51 92.47 -46.57 REMARK 500 3 ILE A 65 -62.51 -108.11 REMARK 500 3 SER A 75 -85.76 61.86 REMARK 500 4 SER A 2 110.91 -170.97 REMARK 500 4 SER A 6 90.54 49.38 REMARK 500 4 SER A 8 161.95 58.89 REMARK 500 4 GLN A 10 111.06 -161.72 REMARK 500 4 ALA A 15 -178.28 -59.76 REMARK 500 4 ARG A 16 -53.27 -121.73 REMARK 500 4 ASN A 18 103.71 -47.19 REMARK 500 4 CYS A 30 -88.70 -126.41 REMARK 500 4 ARG A 39 -72.62 -68.97 REMARK 500 4 VAL A 40 78.56 75.61 REMARK 500 4 ASN A 51 93.31 -45.73 REMARK 500 4 SER A 74 84.95 79.61 REMARK 500 5 SER A 3 -58.97 -137.57 REMARK 500 5 SER A 8 157.39 60.89 REMARK 500 5 ASN A 18 109.89 -54.61 REMARK 500 5 CYS A 30 -77.81 -112.05 REMARK 500 5 ARG A 39 -73.73 -71.57 REMARK 500 5 VAL A 40 78.15 77.41 REMARK 500 5 ASN A 51 92.92 -46.81 REMARK 500 5 VAL A 62 -177.44 -62.75 REMARK 500 6 SER A 3 148.61 -175.25 REMARK 500 6 SER A 5 -68.85 -144.21 REMARK 500 6 GLN A 10 129.82 -178.25 REMARK 500 6 CYS A 30 -86.63 -113.73 REMARK 500 6 ARG A 39 -73.44 -69.45 REMARK 500 6 VAL A 40 75.72 75.74 REMARK 500 6 ASN A 51 92.85 -45.99 REMARK 500 6 ASN A 60 -35.00 -39.80 REMARK 500 6 SER A 74 96.06 48.81 REMARK 500 6 SER A 75 111.34 -39.49 REMARK 500 7 SER A 2 99.00 -165.56 REMARK 500 7 SER A 3 84.28 61.32 REMARK 500 7 SER A 5 -60.65 -90.85 REMARK 500 7 SER A 6 -61.26 -138.03 REMARK 500 7 HIS A 9 -45.43 -156.30 REMARK 500 7 ALA A 15 -176.34 -56.75 REMARK 500 7 ARG A 16 -52.26 -120.07 REMARK 500 7 ASN A 18 101.15 -58.77 REMARK 500 7 CYS A 30 -79.19 -112.16 REMARK 500 7 VAL A 40 75.40 72.33 REMARK 500 7 ASN A 51 91.89 -45.25 REMARK 500 7 VAL A 62 -177.68 -61.01 REMARK 500 7 SER A 74 150.19 168.95 REMARK 500 8 SER A 2 -60.12 -152.52 REMARK 500 8 SER A 5 108.05 56.53 REMARK 500 8 SER A 6 -55.66 -157.54 REMARK 500 8 SER A 8 161.27 61.63 REMARK 500 8 GLN A 10 134.69 -39.60 REMARK 500 8 CYS A 30 -72.09 -102.71 REMARK 500 8 ARG A 39 -72.91 -70.95 REMARK 500 8 VAL A 40 78.98 76.49 REMARK 500 8 ASN A 51 93.32 -42.70 REMARK 500 8 SER A 75 -57.42 -159.06 REMARK 500 9 SER A 3 -58.62 -121.81 REMARK 500 9 SER A 6 -58.24 -154.99 REMARK 500 9 ASN A 18 109.80 -59.44 REMARK 500 9 CYS A 30 -75.43 -111.03 REMARK 500 9 VAL A 40 76.67 71.33 REMARK 500 9 ASN A 51 91.87 -46.18 REMARK 500 9 ILE A 65 -64.22 -106.49 REMARK 500 10 SER A 5 83.67 -177.20 REMARK 500 10 SER A 8 -53.72 -158.30 REMARK 500 10 ALA A 15 -178.18 -59.73 REMARK 500 10 CYS A 30 -78.02 -108.52 REMARK 500 10 VAL A 40 74.50 76.00 REMARK 500 10 ASN A 51 93.00 -45.30 REMARK 500 10 SER A 74 -58.87 -129.22 REMARK 500 10 SER A 75 -58.12 -178.86 REMARK 500 11 SER A 6 80.71 -178.58 REMARK 500 11 ASN A 18 98.42 -55.58 REMARK 500 11 CYS A 30 -76.94 -115.99 REMARK 500 11 LYS A 31 132.26 -174.68 REMARK 500 11 ILE A 34 122.35 72.68 REMARK 500 11 ARG A 39 -70.06 -69.37 REMARK 500 11 VAL A 40 77.88 71.99 REMARK 500 11 ASN A 51 94.04 -44.44 REMARK 500 11 SER A 74 122.16 178.42 REMARK 500 12 SER A 5 147.98 63.89 REMARK 500 12 GLN A 10 138.83 -173.63 REMARK 500 12 ARG A 39 -73.10 -70.96 REMARK 500 12 VAL A 40 76.47 77.90 REMARK 500 12 ASN A 51 92.89 -45.07 REMARK 500 12 PHE A 57 160.43 178.99 REMARK 500 12 VAL A 62 -179.98 -53.08 REMARK 500 13 SER A 3 -58.19 74.38 REMARK 500 13 SER A 5 -59.88 -145.90 REMARK 500 13 SER A 6 78.44 179.82 REMARK 500 13 SER A 8 -55.45 -143.52 REMARK 500 13 HIS A 9 -66.61 178.60 REMARK 500 13 GLN A 10 136.97 66.85 REMARK 500 13 ASN A 18 99.36 -53.50 REMARK 500 13 CYS A 30 -69.97 -109.34 REMARK 500 13 ARG A 39 -73.62 -72.82 REMARK 500 13 VAL A 40 77.88 77.32 REMARK 500 13 ASN A 51 92.72 -46.74 REMARK 500 13 ASN A 60 -35.29 -39.62 REMARK 500 13 SER A 74 109.64 -44.04 REMARK 500 14 HIS A 9 125.68 66.24 REMARK 500 14 ALA A 15 170.19 -59.64 REMARK 500 14 ASN A 18 93.97 -49.50 REMARK 500 14 CYS A 30 -64.04 -130.71 REMARK 500 14 LYS A 31 140.88 -175.37 REMARK 500 14 ILE A 34 117.01 72.22 REMARK 500 14 ARG A 39 -73.89 -73.37 REMARK 500 14 VAL A 40 77.31 79.52 REMARK 500 14 ASN A 51 93.17 -45.94 REMARK 500 14 VAL A 62 -177.75 -60.14 REMARK 500 14 SER A 75 -57.63 -138.84 REMARK 500 15 SER A 2 -59.06 -152.78 REMARK 500 15 SER A 3 -67.70 73.28 REMARK 500 15 HIS A 9 133.41 64.26 REMARK 500 15 ALA A 15 177.59 -57.01 REMARK 500 15 ASN A 18 95.41 -57.39 REMARK 500 15 CYS A 30 -79.95 -111.63 REMARK 500 15 ARG A 39 -73.62 -73.22 REMARK 500 15 VAL A 40 77.79 78.52 REMARK 500 15 ASN A 51 92.42 -44.95 REMARK 500 16 SER A 6 -59.53 -131.65 REMARK 500 16 HIS A 9 147.08 61.05 REMARK 500 16 ASN A 18 96.44 -42.55 REMARK 500 16 CYS A 30 -86.02 -108.88 REMARK 500 16 ARG A 39 -73.28 -71.95 REMARK 500 16 VAL A 40 77.97 77.56 REMARK 500 16 ASN A 51 92.17 -45.11 REMARK 500 16 SER A 74 114.87 60.26 REMARK 500 17 SER A 2 79.82 63.90 REMARK 500 17 SER A 5 84.23 39.79 REMARK 500 17 CYS A 30 -77.86 -104.16 REMARK 500 17 ARG A 39 -74.26 -70.07 REMARK 500 17 VAL A 40 77.18 78.22 REMARK 500 17 ASN A 51 92.80 -46.03 REMARK 500 17 SER A 74 -60.29 70.28 REMARK 500 18 SER A 3 89.31 -171.34 REMARK 500 18 CYS A 30 -93.24 -120.09 REMARK 500 18 ARG A 39 -71.97 -69.02 REMARK 500 18 VAL A 40 79.65 72.83 REMARK 500 18 ASN A 51 92.10 -46.39 REMARK 500 18 ASN A 60 -29.92 -39.98 REMARK 500 19 SER A 2 96.17 -162.82 REMARK 500 19 SER A 6 -59.84 -144.65 REMARK 500 19 HIS A 9 21.94 -150.88 REMARK 500 19 ARG A 16 -60.01 -97.25 REMARK 500 19 ASN A 18 105.48 -56.94 REMARK 500 19 CYS A 30 -83.49 -115.78 REMARK 500 19 VAL A 40 77.46 70.93 REMARK 500 19 ASN A 51 91.01 -46.68 REMARK 500 19 VAL A 62 139.13 -38.88 REMARK 500 19 SER A 74 166.07 56.24 REMARK 500 19 SER A 75 114.09 73.60 REMARK 500 20 SER A 2 150.56 177.59 REMARK 500 20 SER A 5 81.80 -152.34 REMARK 500 20 ASN A 18 106.98 -54.52 REMARK 500 20 CYS A 30 -77.77 -126.89 REMARK 500 20 ILE A 34 113.89 67.81 REMARK 500 20 ARG A 39 -75.71 -62.63 REMARK 500 20 VAL A 40 83.45 69.19 REMARK 500 20 ASN A 51 93.73 -43.48 REMARK 500 20 SER A 74 77.60 177.50 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK001000001.1 RELATED DB: TARGETDB
DBREF 1UJY A 8 70 UNP Q15052 ARHG6_HUMAN 160 222
SEQADV 1UJY GLY A 1 UNP Q15052 CLONING ARTIFACT SEQADV 1UJY SER A 2 UNP Q15052 CLONING ARTIFACT SEQADV 1UJY SER A 3 UNP Q15052 CLONING ARTIFACT SEQADV 1UJY GLY A 4 UNP Q15052 CLONING ARTIFACT SEQADV 1UJY SER A 5 UNP Q15052 CLONING ARTIFACT SEQADV 1UJY SER A 6 UNP Q15052 CLONING ARTIFACT SEQADV 1UJY GLY A 7 UNP Q15052 CLONING ARTIFACT SEQADV 1UJY SER A 71 UNP Q15052 CLONING ARTIFACT SEQADV 1UJY GLY A 72 UNP Q15052 CLONING ARTIFACT SEQADV 1UJY PRO A 73 UNP Q15052 CLONING ARTIFACT SEQADV 1UJY SER A 74 UNP Q15052 CLONING ARTIFACT SEQADV 1UJY SER A 75 UNP Q15052 CLONING ARTIFACT SEQADV 1UJY GLY A 76 UNP Q15052 CLONING ARTIFACT
SEQRES 1 A 76 GLY SER SER GLY SER SER GLY SER HIS GLN LEU ILE VAL SEQRES 2 A 76 LYS ALA ARG PHE ASN PHE LYS GLN THR ASN GLU ASP GLU SEQRES 3 A 76 LEU SER VAL CYS LYS GLY ASP ILE ILE TYR VAL THR ARG SEQRES 4 A 76 VAL GLU GLU GLY GLY TRP TRP GLU GLY THR LEU ASN GLY SEQRES 5 A 76 ARG THR GLY TRP PHE PRO SER ASN TYR VAL ARG GLU ILE SEQRES 6 A 76 LYS SER SER GLU ARG SER GLY PRO SER SER GLY
HELIX 1 1 SER A 67 ARG A 70 1 4
SHEET 1 A 5 ARG A 53 PHE A 57 0 SHEET 2 A 5 TRP A 46 LEU A 50 -1 N LEU A 50 O ARG A 53 SHEET 3 A 5 ILE A 35 VAL A 37 -1 N TYR A 36 O THR A 49 SHEET 4 A 5 LEU A 11 LYS A 14 -1 N VAL A 13 O ILE A 35 SHEET 5 A 5 ARG A 63 GLU A 64 -1 O ARG A 63 N LYS A 14
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000