10 20 30 40 50 60 70 80 1UGY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SUGAR BINDING PROTEIN 23-JUN-03 1UGY
TITLE CRYSTAL STRUCTURE OF JACALIN- MELLIBIOSE (GAL-ALPHA(1-6)- TITLE 2 GLC) COMPLEX
COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGLUTININ ALPHA CHAIN; COMPND 3 CHAIN: A, G; COMPND 4 SYNONYM: JACALIN ALPHA CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AGGLUTININ BETA-3 CHAIN; COMPND 7 CHAIN: B, D, F, H; COMPND 8 SYNONYM: JACALIN BETA-3 CHAIN; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: AGGLUTININ ALPHA CHAIN; COMPND 11 CHAIN: C, E; COMPND 12 SYNONYM: JACALIN ALPHA CHAIN
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 3 ORGANISM_TAXID: 3490; SOURCE 4 ORGAN: SEEDS; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 7 ORGANISM_TAXID: 3490; SOURCE 8 ORGAN: SEEDS; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 11 ORGANISM_TAXID: 3490; SOURCE 12 ORGAN: SEEDS
KEYWDS ALL BETA SHEETS PROTEIN, BETA-PRISM I FOLD, GAL SPECIFIC, KEYWDS 2 SUGAR BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR A.A.JEYAPRAKASH,S.KATIYAR,C.P.SWAMINATHAN,K.SEKAR,A.SUROLIA, AUTHOR 2 M.VIJAYAN
REVDAT 3 04-AUG-09 1UGY 1 FORMUL HET HETATM HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 24-FEB-09 1UGY 1 VERSN REVDAT 1 23-SEP-03 1UGY 0
JRNL AUTH A.A.JEYAPRAKASH,S.KATIYAR,C.P.SWAMINATHAN,K.SEKAR, JRNL AUTH 2 A.SUROLIA,M.VIJAYAN JRNL TITL STRUCTURAL BASIS OF THE CARBOHYDRATE SPECIFICITIES JRNL TITL 2 OF JACALIN: AN X-RAY AND MODELING STUDY JRNL REF J.MOL.BIOL. V. 332 217 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12946359 JRNL DOI 10.1016/S0022-2836(03)00901-X
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.A.JEYAPRAKASH,P.G.RANI,G.B.REDDY,S.BANUMATHI, REMARK 1 AUTH 2 C.BETZEL,K.SEKAR,A.SUROLIA,M.VIJAYAN REMARK 1 TITL CRYSTAL STRUCTURE OF THE JACALIN-T-ANTIGEN COMPLEX REMARK 1 TITL 2 AND A COMPARATIVE STUDY OF LECTIN-T-ANTIGEN REMARK 1 TITL 3 COMPLEXES REMARK 1 REF J.MOL.BIOL. V. 321 637 2002 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1016/S0022-2836(02)00674-5 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.SANKARANARAYANAN,K.SEKAR,R.BANERJEE,V.SHARMA, REMARK 1 AUTH 2 A.SUROLIA,M.VIJAYAN REMARK 1 TITL A NOVEL MODE OF CARBOHYDRATE RECOGNITION IN REMARK 1 TITL 2 JACALIN, A MORACEAE PLANT LECTIN WITH A BETA-PRISM REMARK 1 TITL 3 FOLD REMARK 1 REF NAT.STRUCT.BIOL. V. 3 596 1996 REMARK 1 REFN ISSN 1072-8368
REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1643950.950 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 32307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 948 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4948 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 153 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.63000 REMARK 3 B22 (A**2) : -11.54000 REMARK 3 B33 (A**2) : -4.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.36 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.81 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.140 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.910 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.770 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 40.09 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CIS.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1UGY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUN-03. REMARK 100 THE RCSB ID CODE IS RCSB005812.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : OSMIC MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32331 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM SULFATE, SODIUM REMARK 280 ACETATE TRIHYDRATE BUFFER, PH 7.3, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.23000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.82500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.91500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.82500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.23000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.91500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 1 REMARK 465 GLU B 2 REMARK 465 SER B 19 REMARK 465 SER B 20 REMARK 465 ASP D 1 REMARK 465 GLU D 2 REMARK 465 SER D 19 REMARK 465 SER D 20 REMARK 465 ASP F 1 REMARK 465 GLU F 2 REMARK 465 ASP H 1 REMARK 465 GLU H 2 REMARK 465 SER H 19 REMARK 465 SER H 20
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 GLN D 3 CG CD OE1 NE2 REMARK 470 GLN F 3 CG CD OE1 NE2 REMARK 470 SER F 20 OG REMARK 470 GLN H 3 CG CD OE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 75 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 23 -91.17 -128.28 REMARK 500 ALA A 24 -168.04 -162.68 REMARK 500 SER A 76 -140.16 61.81 REMARK 500 PHE C 9 -159.57 -129.79 REMARK 500 THR C 23 -87.51 -114.16 REMARK 500 ALA C 24 -168.66 -163.60 REMARK 500 ALA D 17 157.76 -48.62 REMARK 500 PHE E 9 -156.93 -131.37 REMARK 500 THR E 23 -102.89 -123.09 REMARK 500 PHE G 9 -163.33 -129.20 REMARK 500 LYS G 21 -6.92 -56.92 REMARK 500 THR G 23 -92.98 -128.42 REMARK 500 THR G 49 -168.15 -127.76 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 434 DISTANCE = 5.38 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLA A 200 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 201 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLA C 200 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC C 201 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLA E 200 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BGC E 201 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLA G 200 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BGC G 201
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M26 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JACALIN-T-ANTIGEN COMPLEX REMARK 900 RELATED ID: 1JAC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JACALIN-ME-ALPHA-GAL COMPLEX REMARK 900 RELATED ID: 1UGW RELATED DB: PDB REMARK 900 JACALIN - GAL COMPLEX REMARK 900 RELATED ID: 1UGX RELATED DB: PDB REMARK 900 JACALIN - ME-ALPHA-T-ANTIGEN (GAL-BETA-GALNAC-ALPHA-O-ME) REMARK 900 COMPLEX REMARK 900 RELATED ID: 1UH0 RELATED DB: PDB REMARK 900 JACALIN - ME-ALPHA-GALNAC COMPLEX REMARK 900 RELATED ID: 1UH1 RELATED DB: PDB REMARK 900 JACALIN - GALNAC-BETA(1-3)-GAL-ALPHA-O-ME COMPLEX
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE REPORTED EVIDENCES FOR THE SEQUENCE HETEROGENITY AT REMARK 999 THE 45TH POSITION IN CHAIN A AND CHAIN G.
DBREF 1UGY A 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 1UGY G 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 1UGY B 1 20 UNP P18673 LEC3_ARTIN 1 20 DBREF 1UGY D 1 20 UNP P18673 LEC3_ARTIN 1 20 DBREF 1UGY F 1 20 UNP P18673 LEC3_ARTIN 1 20 DBREF 1UGY H 1 20 UNP P18673 LEC3_ARTIN 1 20 DBREF 1UGY C 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 1UGY E 1 133 UNP P18670 LECA_ARTIN 1 133
SEQADV 1UGY VAL A 45 UNP P18670 LYS 45 SEE REMARK 999 SEQADV 1UGY VAL G 45 UNP P18670 LYS 45 SEE REMARK 999 SEQADV 1UGY SER B 19 UNP P18673 VAL 19 CONFLICT SEQADV 1UGY SER D 19 UNP P18673 VAL 19 CONFLICT SEQADV 1UGY SER F 19 UNP P18673 VAL 19 CONFLICT SEQADV 1UGY SER H 19 UNP P18673 VAL 19 CONFLICT
SEQRES 1 A 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 A 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 A 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 A 133 VAL GLY GLN ASN HIS VAL SER PHE ILE THR GLY PHE THR SEQRES 5 A 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 A 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 A 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 A 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 A 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 A 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 A 133 LEU SER LEU SEQRES 1 B 20 ASP GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 B 20 PRO TRP GLY ALA LYS SER SER SEQRES 1 C 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 C 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 C 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 C 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 C 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 C 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 C 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 C 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 C 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 C 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 C 133 LEU SER LEU SEQRES 1 D 20 ASP GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 D 20 PRO TRP GLY ALA LYS SER SER SEQRES 1 E 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 E 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 E 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 E 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 E 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 E 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 E 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 E 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 E 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 E 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 E 133 LEU SER LEU SEQRES 1 F 20 ASP GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 F 20 PRO TRP GLY ALA LYS SER SER SEQRES 1 G 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 G 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 G 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 G 133 VAL GLY GLN ASN HIS VAL SER PHE ILE THR GLY PHE THR SEQRES 5 G 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 G 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 G 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 G 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 G 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 G 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 G 133 LEU SER LEU SEQRES 1 H 20 ASP GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 H 20 PRO TRP GLY ALA LYS SER SER
HET GLA A 200 11 HET GLC A 201 12 HET GLA C 200 11 HET GLC C 201 12 HET GLA E 200 11 HET BGC E 201 12 HET GLA G 200 11 HET BGC G 201 12
HETNAM GLA ALPHA D-GALACTOSE HETNAM GLC ALPHA-D-GLUCOSE HETNAM BGC BETA-D-GLUCOSE
FORMUL 9 GLA 4(C6 H12 O6) FORMUL 9 GLC 2(C6 H12 O6) FORMUL 11 BGC 2(C6 H12 O6) FORMUL 13 HOH *255(H2 O)
SHEET 1 A 8 LYS A 2 ASP A 5 0 SHEET 2 A 8 LEU A 112 ILE A 120 -1 O GLY A 118 N PHE A 4 SHEET 3 A 8 LEU A 124 SER A 132 -1 O SER A 128 N LYS A 117 SHEET 4 A 8 VAL B 10 GLY B 16 -1 O VAL B 12 N MET A 129 SHEET 5 A 8 THR C 102 ASN C 110 -1 O PRO C 107 N GLY B 13 SHEET 6 A 8 ILE C 65 VAL C 75 -1 N VAL C 68 O LEU C 106 SHEET 7 A 8 TYR C 78 THR C 88 -1 O LYS C 87 N MET C 66 SHEET 8 A 8 THR C 92 GLY C 97 -1 O TYR C 93 N PHE C 86 SHEET 1 B 4 SER A 37 VAL A 40 0 SHEET 2 B 4 ILE A 25 LEU A 34 -1 N LEU A 34 O SER A 37 SHEET 3 B 4 GLY A 11 TYR A 19 -1 N GLU A 14 O VAL A 31 SHEET 4 B 4 THR A 52 SER A 57 -1 O THR A 52 N TYR A 19 SHEET 1 C 8 THR A 92 GLY A 97 0 SHEET 2 C 8 TYR A 78 THR A 88 -1 N PHE A 86 O TYR A 93 SHEET 3 C 8 ILE A 65 VAL A 75 -1 N MET A 66 O LYS A 87 SHEET 4 C 8 THR A 102 ASN A 110 -1 O LEU A 106 N VAL A 68 SHEET 5 C 8 VAL D 10 GLY D 16 -1 O ILE D 11 N ASN A 110 SHEET 6 C 8 LEU C 124 SER C 132 -1 N LEU C 131 O VAL D 10 SHEET 7 C 8 LEU C 112 ILE C 120 -1 N VAL C 114 O TYR C 130 SHEET 8 C 8 LYS C 2 ASP C 5 -1 N PHE C 4 O GLY C 118 SHEET 1 D 4 SER C 37 VAL C 40 0 SHEET 2 D 4 ILE C 25 LEU C 34 -1 N LEU C 34 O SER C 37 SHEET 3 D 4 GLY C 11 TYR C 19 -1 N GLU C 14 O VAL C 31 SHEET 4 D 4 THR C 52 SER C 57 -1 O THR C 52 N TYR C 19 SHEET 1 E 8 LYS E 2 ASP E 5 0 SHEET 2 E 8 LEU E 112 ILE E 120 -1 O GLY E 118 N PHE E 4 SHEET 3 E 8 LEU E 124 SER E 132 -1 O TYR E 130 N VAL E 114 SHEET 4 E 8 VAL F 10 GLY F 16 -1 O VAL F 12 N MET E 129 SHEET 5 E 8 THR G 102 ASN G 110 -1 O PRO G 107 N GLY F 13 SHEET 6 E 8 ILE G 65 VAL G 75 -1 N MET G 66 O ILE G 108 SHEET 7 E 8 TYR G 78 THR G 88 -1 O LYS G 87 N MET G 66 SHEET 8 E 8 THR G 92 GLY G 97 -1 O TYR G 93 N PHE G 86 SHEET 1 F 4 SER E 37 VAL E 40 0 SHEET 2 F 4 ILE E 25 LEU E 34 -1 N TYR E 32 O TYR E 39 SHEET 3 F 4 GLY E 11 TYR E 19 -1 N GLU E 14 O VAL E 31 SHEET 4 F 4 THR E 52 SER E 57 -1 O ILE E 56 N ILE E 15 SHEET 1 G 8 THR E 92 GLY E 97 0 SHEET 2 G 8 TYR E 78 THR E 88 -1 N PHE E 86 O TYR E 93 SHEET 3 G 8 ILE E 65 VAL E 75 -1 N MET E 66 O LYS E 87 SHEET 4 G 8 THR E 102 ASN E 110 -1 O THR E 102 N THR E 72 SHEET 5 G 8 VAL H 10 GLY H 16 -1 O GLY H 13 N PRO E 107 SHEET 6 G 8 LEU G 124 SER G 132 -1 N LEU G 131 O VAL H 10 SHEET 7 G 8 LEU G 112 ILE G 120 -1 N LEU G 112 O SER G 132 SHEET 8 G 8 LYS G 2 ASP G 5 -1 N PHE G 4 O GLY G 118 SHEET 1 H 4 SER G 37 VAL G 40 0 SHEET 2 H 4 ILE G 25 LEU G 34 -1 N LEU G 34 O SER G 37 SHEET 3 H 4 GLY G 11 TYR G 19 -1 N SER G 18 O GLY G 26 SHEET 4 H 4 THR G 52 SER G 57 -1 O THR G 52 N TYR G 19
LINK C1 GLA A 200 O6 GLC A 201 1555 1555 1.38 LINK C1 GLA C 200 O6 GLC C 201 1555 1555 1.41 LINK C1 GLA E 200 O6 BGC E 201 1555 1555 1.38 LINK C1 GLA G 200 O6 BGC G 201 1555 1555 1.41
CISPEP 1 PHE A 60 PRO A 61 0 0.22 CISPEP 2 GLY A 94 PRO A 95 0 1.13 CISPEP 3 GLY B 13 PRO B 14 0 0.77 CISPEP 4 PHE C 60 PRO C 61 0 0.34 CISPEP 5 GLY C 94 PRO C 95 0 0.44 CISPEP 6 GLY D 13 PRO D 14 0 1.11 CISPEP 7 PHE E 60 PRO E 61 0 0.36 CISPEP 8 GLY E 94 PRO E 95 0 0.38 CISPEP 9 GLY F 13 PRO F 14 0 0.65 CISPEP 10 PHE G 60 PRO G 61 0 0.48 CISPEP 11 GLY G 94 PRO G 95 0 0.99 CISPEP 12 GLY H 13 PRO H 14 0 0.97
SITE 1 AC1 8 GLY A 1 GLY A 121 TYR A 122 TRP A 123 SITE 2 AC1 8 ASP A 125 GLC A 201 HOH A 378 LYS F 18 SITE 1 AC2 6 TYR A 78 TYR A 122 GLA A 200 HOH A 386 SITE 2 AC2 6 VAL E 79 LYS F 18 SITE 1 AC3 6 GLY C 1 GLY C 121 TYR C 122 TRP C 123 SITE 2 AC3 6 ASP C 125 GLC C 201 SITE 1 AC4 4 TYR C 78 TYR C 122 GLA C 200 ARG G 82 SITE 1 AC5 6 GLY E 1 GLY E 121 TYR E 122 TRP E 123 SITE 2 AC5 6 ASP E 125 BGC E 201 SITE 1 AC6 6 TYR E 78 TYR E 122 GLA E 200 HOH E 443 SITE 2 AC6 6 HOH E 454 HOH E 455 SITE 1 AC7 8 GLY G 1 TYR G 78 GLY G 121 TYR G 122 SITE 2 AC7 8 TRP G 123 ASP G 125 BGC G 201 HOH G 449 SITE 1 AC8 4 TYR C 19 TYR G 78 TYR G 122 GLA G 200
CRYST1 80.460 99.830 105.650 90.00 90.00 90.00 P 21 21 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012429 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010017 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009465 0.00000