10 20 30 40 50 60 70 80 1UGW - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SUGAR BINDING PROTEIN 22-JUN-03 1UGW
TITLE CRYSTAL STRUCTURE OF JACALIN- GAL COMPLEX
COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGLUTININ ALPHA CHAIN; COMPND 3 CHAIN: A, G; COMPND 4 SYNONYM: JACALIN ALPHA CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AGGLUTININ BETA-3 CHAIN; COMPND 7 CHAIN: B, D, F, H; COMPND 8 SYNONYM: JACALIN BETA-3 CHAIN; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: AGGLUTININ ALPHA-CHAIN; COMPND 11 CHAIN: C, E; COMPND 12 SYNONYM: JACALIN ALPHA CHAIN
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 3 ORGANISM_TAXID: 3490; SOURCE 4 ORGAN: SEEDS; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 7 ORGANISM_TAXID: 3490; SOURCE 8 ORGAN: SEEDS; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 11 ORGANISM_TAXID: 3490; SOURCE 12 ORGAN: SEEDS
KEYWDS ALL BETA SHEET PROTEIN, BETA PRISM I FOLD, GALACTOSE KEYWDS 2 SPECIFIC, SUGAR BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR A.A.JEYAPRAKASH,S.KATIYAR,C.P.SWAMINATHAN,K.SEKAR,A.SUROLIA, AUTHOR 2 M.VIJAYAN
REVDAT 2 24-FEB-09 1UGW 1 VERSN REVDAT 1 23-SEP-03 1UGW 0
JRNL AUTH A.A.JEYAPRAKASH,S.KATIYAR,C.P.SWAMINATHAN,K.SEKAR, JRNL AUTH 2 A.SUROLIA,M.VIJAYAN JRNL TITL STRUCTURAL BASIS OF THE CARBOHYDRATE SPECIFICITIES JRNL TITL 2 OF JACALIN: AN X-RAY AND MODELING STUDY JRNL REF J.MOL.BIOL. V. 332 217 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12946359 JRNL DOI 10.1016/S0022-2836(03)00901-X
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.A.JEYAPRAKASH,P.G.RANI,G.B.REDDY,S.BANUMATHI, REMARK 1 AUTH 2 C.BETZEL,K.SEKAR,A.SUROLIA,M.VIJAYAN REMARK 1 TITL CRYSTAL STRUCTURE OF THE JACALIN-T-ANTIGEN COMPLEX REMARK 1 TITL 2 AND A COMPARATIVE STUDY OF LECTIN-T-ANTIGEN REMARK 1 TITL 3 COMPLEXES REMARK 1 REF J.MOL.BIOL. V. 321 637 2002 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1016/S0022-2836(02)00674-5 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.SANKARANARAYANAN,K.SEKAR,R.BANERJEE,V.SHARMA, REMARK 1 AUTH 2 A.SUROLIA,M.VIJAYAN REMARK 1 TITL A NOVEL MODE OF CARBOHYDRATE RECOGNITION IN REMARK 1 TITL 2 JACALIN, A MORACEAE PLANT LECTIN WITH A BETA-PRISM REMARK 1 TITL 3 FOLD REMARK 1 REF NAT.STRUCT.BIOL. V. 3 596 1996 REMARK 1 REFN ISSN 1072-8368
REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2109195.610 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 91005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4565 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 14163 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 747 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 489 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.30000 REMARK 3 B22 (A**2) : -4.17000 REMARK 3 B33 (A**2) : -3.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.78 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.290 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.380 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.600 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 49.99 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CIS.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1UGW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUN-03. REMARK 100 THE RCSB ID CODE IS RCSB005810.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91056 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1M26 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM SULFATE, SODIUM REMARK 280 ACETATE TRIHYDRATE, PH 7.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.22200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.92450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.77400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.92450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.22200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.77400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 1 REMARK 465 GLU B 2 REMARK 465 SER B 19 REMARK 465 SER B 20 REMARK 465 ASP D 1 REMARK 465 GLU D 2 REMARK 465 SER D 19 REMARK 465 SER D 20 REMARK 465 ASP F 1 REMARK 465 GLU F 2 REMARK 465 ASP H 1 REMARK 465 GLU H 2 REMARK 465 SER H 19 REMARK 465 SER H 20
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 GLN D 3 CG CD OE1 NE2 REMARK 470 GLN F 3 CG CD OE1 NE2 REMARK 470 SER F 20 OG REMARK 470 GLN H 3 CG CD OE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 23 -85.86 -129.96 REMARK 500 SER A 76 -135.95 60.81 REMARK 500 PHE C 9 -163.05 -128.86 REMARK 500 THR C 23 -92.49 -119.09 REMARK 500 ALA C 24 -165.93 -161.65 REMARK 500 PHE E 9 -160.75 -128.30 REMARK 500 LYS E 21 -7.63 -58.01 REMARK 500 THR E 23 -94.93 -121.14 REMARK 500 ALA E 24 -165.02 -161.16 REMARK 500 PHE G 9 -164.34 -129.33 REMARK 500 THR G 23 -100.04 -118.94 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 474 DISTANCE = 8.99 ANGSTROMS REMARK 525 HOH C 475 DISTANCE = 11.43 ANGSTROMS REMARK 525 HOH E 667 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH G 643 DISTANCE = 5.60 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL A 200 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL C 1200 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL E 2200 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL G 3200
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JAC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JACALIN - ME-ALPHA-GAL COMPLEX REMARK 900 RELATED ID: 1M26 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JACALIN - T-ANTIGEN COMPLEX REMARK 900 RELATED ID: 1UGX RELATED DB: PDB REMARK 900 JACALIN - ME-ALPHA-T-ANTIGEN (GAL-BETA-GALNAC-ALPHA-O-ME) REMARK 900 COMPLEX REMARK 900 RELATED ID: 1UGY RELATED DB: PDB REMARK 900 JACALIN - MELLIBIOSE (GAL-ALPHA(1-6)-GLC) COMPLEX REMARK 900 RELATED ID: 1UH0 RELATED DB: PDB REMARK 900 JACALIN - ME-ALPHA-GALNAC COMPLEX REMARK 900 RELATED ID: 1UH1 RELATED DB: PDB REMARK 900 JACALIN - GALNAC-BETA(1-3)-GAL-ALPHA-O-ME COMPLEX
DBREF 1UGW A 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 1UGW G 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 1UGW C 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 1UGW E 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 1UGW B 1 20 UNP P18673 LEC3_ARTIN 1 20 DBREF 1UGW D 1 20 UNP P18673 LEC3_ARTIN 1 20 DBREF 1UGW F 1 20 UNP P18673 LEC3_ARTIN 1 20 DBREF 1UGW H 1 20 UNP P18673 LEC3_ARTIN 1 20
SEQADV 1UGW VAL A 45 UNP P18670 LYS 45 SEE REMARK 999 SEQADV 1UGW VAL G 45 UNP P18670 LYS 45 SEE REMARK 999 SEQADV 1UGW SER B 19 UNP P18673 VAL 19 CONFLICT SEQADV 1UGW SER D 19 UNP P18673 VAL 19 CONFLICT SEQADV 1UGW SER F 19 UNP P18673 VAL 19 CONFLICT SEQADV 1UGW SER H 19 UNP P18673 VAL 19 CONFLICT
SEQRES 1 A 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 A 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 A 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 A 133 VAL GLY GLN ASN HIS VAL SER PHE ILE THR GLY PHE THR SEQRES 5 A 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 A 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 A 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 A 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 A 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 A 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 A 133 LEU SER LEU SEQRES 1 B 20 ASP GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 B 20 PRO TRP GLY ALA LYS SER SER SEQRES 1 C 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 C 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 C 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 C 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 C 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 C 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 C 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 C 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 C 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 C 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 C 133 LEU SER LEU SEQRES 1 D 20 ASP GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 D 20 PRO TRP GLY ALA LYS SER SER SEQRES 1 E 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 E 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 E 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 E 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 E 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 E 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 E 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 E 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 E 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 E 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 E 133 LEU SER LEU SEQRES 1 F 20 ASP GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 F 20 PRO TRP GLY ALA LYS SER SER SEQRES 1 G 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 G 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 G 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 G 133 VAL GLY GLN ASN HIS VAL SER PHE ILE THR GLY PHE THR SEQRES 5 G 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 G 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 G 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 G 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 G 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 G 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 G 133 LEU SER LEU SEQRES 1 H 20 ASP GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 H 20 PRO TRP GLY ALA LYS SER SER
HET GAL A 200 12 HET GAL C1200 12 HET GAL E2200 12 HET GAL G3200 12
HETNAM GAL BETA-D-GALACTOSE
FORMUL 9 GAL 4(C6 H12 O6) FORMUL 13 HOH *489(H2 O)
SHEET 1 A 8 LYS A 2 ASP A 5 0 SHEET 2 A 8 LEU A 112 ILE A 120 -1 O ILE A 120 N LYS A 2 SHEET 3 A 8 LEU A 124 SER A 132 -1 O SER A 132 N LEU A 112 SHEET 4 A 8 VAL B 10 GLY B 16 -1 O VAL B 10 N LEU A 131 SHEET 5 A 8 THR C 102 ASN C 110 -1 O ASN C 110 N ILE B 11 SHEET 6 A 8 ILE C 65 VAL C 75 -1 N VAL C 68 O LEU C 106 SHEET 7 A 8 TYR C 78 THR C 88 -1 O TYR C 78 N VAL C 75 SHEET 8 A 8 THR C 92 GLY C 97 -1 O TYR C 93 N PHE C 86 SHEET 1 B 4 SER A 37 VAL A 40 0 SHEET 2 B 4 ILE A 25 LEU A 34 -1 N TYR A 32 O TYR A 39 SHEET 3 B 4 GLY A 11 TYR A 19 -1 N GLU A 14 O VAL A 31 SHEET 4 B 4 THR A 52 SER A 57 -1 O THR A 52 N TYR A 19 SHEET 1 C 8 THR A 92 GLY A 97 0 SHEET 2 C 8 TYR A 78 THR A 88 -1 N PHE A 86 O TYR A 93 SHEET 3 C 8 ILE A 65 VAL A 75 -1 N GLU A 67 O LYS A 87 SHEET 4 C 8 THR A 102 ASN A 110 -1 O LEU A 106 N VAL A 68 SHEET 5 C 8 VAL D 10 GLY D 16 -1 O ILE D 11 N ASN A 110 SHEET 6 C 8 LEU C 124 SER C 132 -1 N LEU C 131 O VAL D 10 SHEET 7 C 8 LEU C 112 ILE C 120 -1 N LEU C 112 O SER C 132 SHEET 8 C 8 LYS C 2 ASP C 5 -1 N PHE C 4 O GLY C 118 SHEET 1 D 4 SER C 37 VAL C 40 0 SHEET 2 D 4 ILE C 25 LEU C 34 -1 N LEU C 34 O SER C 37 SHEET 3 D 4 GLY C 11 TYR C 19 -1 N ASN C 16 O GLN C 29 SHEET 4 D 4 THR C 52 SER C 57 -1 O THR C 52 N TYR C 19 SHEET 1 E 8 LYS E 2 ASP E 5 0 SHEET 2 E 8 LEU E 112 ILE E 120 -1 O ILE E 120 N LYS E 2 SHEET 3 E 8 LEU E 124 SER E 132 -1 O SER E 132 N LEU E 112 SHEET 4 E 8 VAL F 10 GLY F 16 -1 O VAL F 10 N LEU E 131 SHEET 5 E 8 THR G 102 ASN G 110 -1 O ASN G 110 N ILE F 11 SHEET 6 E 8 ILE G 65 VAL G 75 -1 N VAL G 68 O LEU G 106 SHEET 7 E 8 TYR G 78 THR G 88 -1 O TYR G 78 N VAL G 75 SHEET 8 E 8 THR G 92 GLY G 97 -1 O TYR G 93 N PHE G 86 SHEET 1 F 4 SER E 37 VAL E 40 0 SHEET 2 F 4 ILE E 25 LEU E 34 -1 N LEU E 34 O SER E 37 SHEET 3 F 4 GLY E 11 TYR E 19 -1 N ASN E 16 O GLN E 29 SHEET 4 F 4 THR E 52 SER E 57 -1 O THR E 52 N TYR E 19 SHEET 1 G 8 THR E 92 GLY E 97 0 SHEET 2 G 8 TYR E 78 THR E 88 -1 N PHE E 86 O TYR E 93 SHEET 3 G 8 ILE E 65 VAL E 75 -1 N GLU E 67 O LYS E 87 SHEET 4 G 8 THR E 102 ASN E 110 -1 O LEU E 106 N VAL E 68 SHEET 5 G 8 VAL H 10 GLY H 16 -1 O ILE H 11 N ASN E 110 SHEET 6 G 8 LEU G 124 SER G 132 -1 N MET G 129 O VAL H 12 SHEET 7 G 8 LEU G 112 ILE G 120 -1 N LYS G 117 O SER G 128 SHEET 8 G 8 LYS G 2 ASP G 5 -1 N PHE G 4 O GLY G 118 SHEET 1 H 4 SER G 37 VAL G 40 0 SHEET 2 H 4 ILE G 25 LEU G 34 -1 N TYR G 32 O TYR G 39 SHEET 3 H 4 GLY G 11 TYR G 19 -1 N ASN G 16 O GLN G 29 SHEET 4 H 4 THR G 52 SER G 57 -1 O THR G 52 N TYR G 19
CISPEP 1 PHE A 60 PRO A 61 0 0.02 CISPEP 2 GLY A 94 PRO A 95 0 0.47 CISPEP 3 GLY B 13 PRO B 14 0 1.49 CISPEP 4 PHE C 60 PRO C 61 0 0.64 CISPEP 5 GLY C 94 PRO C 95 0 0.69 CISPEP 6 GLY D 13 PRO D 14 0 0.94 CISPEP 7 PHE E 60 PRO E 61 0 -0.39 CISPEP 8 GLY E 94 PRO E 95 0 0.68 CISPEP 9 GLY F 13 PRO F 14 0 0.60 CISPEP 10 PHE G 60 PRO G 61 0 0.49 CISPEP 11 GLY G 94 PRO G 95 0 0.84 CISPEP 12 GLY H 13 PRO H 14 0 0.55
SITE 1 AC1 9 GLY A 1 PHE A 47 TYR A 78 GLY A 121 SITE 2 AC1 9 TYR A 122 TRP A 123 ASP A 125 HOH A 466 SITE 3 AC1 9 LYS F 18 SITE 1 AC2 6 GLY C 1 PHE C 47 GLY C 121 TYR C 122 SITE 2 AC2 6 TRP C 123 ASP C 125 SITE 1 AC3 10 HOH A 467 HOH A 559 GLY E 1 PHE E 47 SITE 2 AC3 10 GLY E 121 TYR E 122 TRP E 123 ASP E 125 SITE 3 AC3 10 HOH E 536 HOH E 671 SITE 1 AC4 9 HOH C 634 GLY G 1 PHE G 47 TYR G 78 SITE 2 AC4 9 GLY G 121 TYR G 122 TRP G 123 ASP G 125 SITE 3 AC4 9 HOH G 689
CRYST1 80.444 99.548 105.849 90.00 90.00 90.00 P 21 21 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012431 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010045 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009447 0.00000