10 20 30 40 50 60 70 80 1UFW - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 10-JUN-03 1UFW
TITLE SOLUTION STRUCTURE OF RNP DOMAIN IN SYNAPTOJANIN 2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPTOJANIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNP DOMAIN; COMPND 5 EC: 3.1.3.36; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA HG01551; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P021015-22; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS NMR, RNP DOMAIN, SYNAPTOJANIN 2, STRUCTURAL GENOMICS, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 3 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR F.HE,Y.MUTO,R.USHIKOSHI,M.SHIROUZU,T.TERADA,T.KIGAWA, AUTHOR 2 M.INOUE,T.YABUKI,M.AOKI,E.SEKI,T.MATSUDA,H.HIROTA,M.YOSHIDA, AUTHOR 3 N.KOBAYASHI,A.TANAKA,T.OSANAI,Y.MATSUO,O.OHARA,T.NAGASE, AUTHOR 4 R.KIKUNO,M.NAKAYAMA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 5 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1UFW 1 VERSN REVDAT 1 10-DEC-03 1UFW 0
JRNL AUTH F.HE,Y.MUTO,R.USHIKOSHI,M.SHIROUZU,T.TERADA, JRNL AUTH 2 T.KIGAWA,M.INOUE,T.YABUKI,M.AOKI,E.SEKI,T.MATSUDA, JRNL AUTH 3 H.HIROTA,M.YOSHIDA,N.KOBAYASHI,A.TANAKA,T.OSANAI, JRNL AUTH 4 Y.MATSUO,O.OHARA,T.NAGASE,R.KIKUNO,M.NAKAYAMA, JRNL AUTH 5 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNP DOMAIN IN SYNAPTOJANIN 2 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1UFW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-03. REMARK 100 THE RCSB ID CODE IS RCSB005783.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1MM RNP DOMAIN U-15N, 13C; REMARK 210 20MM PHOSPHATE BUFFER NA(PH REMARK 210 6.0); 100MM NACL; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O; REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.811, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 10 94.74 45.92 REMARK 500 1 GLN A 11 107.82 -171.80 REMARK 500 1 ALA A 16 43.41 71.22 REMARK 500 1 GLU A 32 132.13 -174.32 REMARK 500 1 PHE A 33 132.50 -39.02 REMARK 500 1 ARG A 38 -75.22 -38.38 REMARK 500 1 MET A 61 89.94 -151.78 REMARK 500 1 MET A 80 169.93 -45.06 REMARK 500 1 SER A 94 116.42 -168.33 REMARK 500 2 SER A 8 87.05 62.39 REMARK 500 2 PHE A 10 100.56 50.13 REMARK 500 2 GLN A 11 -52.90 -140.43 REMARK 500 2 ALA A 16 36.41 81.68 REMARK 500 2 ARG A 38 -75.19 -39.21 REMARK 500 2 LEU A 53 149.07 174.26 REMARK 500 2 GLN A 58 -47.14 -26.07 REMARK 500 2 SER A 93 155.30 72.55 REMARK 500 3 SER A 2 75.25 -119.34 REMARK 500 3 SER A 3 -61.35 -96.41 REMARK 500 3 PHE A 10 175.18 51.95 REMARK 500 3 GLN A 11 86.51 59.50 REMARK 500 3 ALA A 16 38.72 80.85 REMARK 500 3 ARG A 38 -73.12 -41.18 REMARK 500 3 TYR A 48 -38.70 -37.77 REMARK 500 3 LEU A 53 148.32 173.48 REMARK 500 3 GLN A 60 -173.33 179.73 REMARK 500 3 MET A 61 103.34 -167.62 REMARK 500 3 SER A 94 86.00 67.14 REMARK 500 4 SER A 9 -62.13 -96.74 REMARK 500 4 PHE A 10 74.62 40.40 REMARK 500 4 GLN A 11 138.54 -173.80 REMARK 500 4 ALA A 16 37.76 79.59 REMARK 500 4 GLU A 32 139.75 -175.46 REMARK 500 4 ARG A 38 -75.45 -66.58 REMARK 500 4 THR A 44 -71.51 -67.19 REMARK 500 4 ILE A 51 94.20 -63.28 REMARK 500 4 GLN A 58 -51.38 -26.14 REMARK 500 4 MET A 80 173.18 -49.92 REMARK 500 4 PRO A 92 -165.69 -74.97 REMARK 500 4 SER A 94 162.69 56.99 REMARK 500 5 SER A 8 95.04 -169.78 REMARK 500 5 PHE A 10 -42.52 -168.15 REMARK 500 5 ALA A 16 57.27 71.26 REMARK 500 5 ARG A 38 -75.42 -37.31 REMARK 500 5 ILE A 51 97.22 -61.86 REMARK 500 5 LEU A 53 152.84 174.13 REMARK 500 5 GLN A 58 -51.98 -22.93 REMARK 500 5 MET A 80 160.04 -40.34 REMARK 500 6 SER A 2 -58.05 178.44 REMARK 500 6 SER A 8 115.96 -178.63 REMARK 500 6 PHE A 10 143.85 -171.89 REMARK 500 6 LEU A 14 -63.97 -93.74 REMARK 500 6 GLU A 32 135.60 178.51 REMARK 500 6 ARG A 38 -75.46 -37.63 REMARK 500 6 THR A 44 -74.06 -76.09 REMARK 500 6 ILE A 51 97.93 -64.11 REMARK 500 6 GLN A 58 -54.74 -20.93 REMARK 500 6 MET A 80 164.28 -49.83 REMARK 500 6 PRO A 92 -84.10 -74.98 REMARK 500 7 SER A 2 91.53 -178.57 REMARK 500 7 SER A 8 84.80 57.98 REMARK 500 7 PHE A 10 109.14 58.53 REMARK 500 7 GLN A 11 133.47 62.54 REMARK 500 7 ALA A 16 48.40 71.08 REMARK 500 7 THR A 26 -160.84 -113.79 REMARK 500 7 GLU A 32 137.91 177.77 REMARK 500 7 THR A 44 -71.94 -59.71 REMARK 500 7 LEU A 53 149.21 178.04 REMARK 500 7 GLN A 58 -42.25 -29.56 REMARK 500 7 MET A 80 160.18 -39.55 REMARK 500 8 GLN A 11 115.37 -163.18 REMARK 500 8 ALA A 16 72.54 75.15 REMARK 500 8 ARG A 38 -74.37 -42.53 REMARK 500 8 LEU A 53 149.80 178.11 REMARK 500 8 GLN A 58 -42.68 -29.83 REMARK 500 8 MET A 80 140.29 -38.94 REMARK 500 9 SER A 8 93.43 49.87 REMARK 500 9 PHE A 10 120.73 -177.26 REMARK 500 9 GLU A 32 144.36 -173.59 REMARK 500 9 ARG A 38 -75.24 -58.30 REMARK 500 9 GLN A 58 -56.62 -19.12 REMARK 500 9 MET A 80 173.21 -52.69 REMARK 500 9 SER A 93 -67.66 -124.82 REMARK 500 10 SER A 8 79.48 47.79 REMARK 500 10 PHE A 10 173.38 53.20 REMARK 500 10 ALA A 16 43.76 74.93 REMARK 500 10 GLU A 32 135.71 -177.98 REMARK 500 10 ARG A 38 -75.61 -41.68 REMARK 500 10 LEU A 53 148.49 -176.11 REMARK 500 10 GLN A 58 -44.76 -29.72 REMARK 500 10 GLN A 60 -175.18 -172.25 REMARK 500 10 ASP A 78 -37.26 -36.80 REMARK 500 10 LYS A 83 -68.49 63.29 REMARK 500 10 SER A 93 76.40 61.88 REMARK 500 10 SER A 94 109.00 -59.31 REMARK 500 11 SER A 8 79.59 57.39 REMARK 500 11 SER A 9 -61.53 -91.86 REMARK 500 11 PHE A 10 97.75 48.10 REMARK 500 11 ILE A 51 98.79 -58.75 REMARK 500 11 LEU A 53 157.04 177.57 REMARK 500 11 GLN A 58 -46.54 -27.17 REMARK 500 11 SER A 93 90.70 46.81 REMARK 500 12 SER A 8 77.05 -116.83 REMARK 500 12 PHE A 10 -55.39 -120.88 REMARK 500 12 GLN A 11 -58.35 -177.78 REMARK 500 12 ASP A 15 -64.43 -90.14 REMARK 500 12 ALA A 16 41.36 175.07 REMARK 500 12 THR A 44 -71.78 -68.17 REMARK 500 12 GLN A 58 -57.92 -17.66 REMARK 500 12 MET A 80 176.91 -50.85 REMARK 500 13 SER A 8 88.28 53.25 REMARK 500 13 PHE A 10 94.67 48.22 REMARK 500 13 ALA A 16 44.21 78.25 REMARK 500 13 LEU A 37 -60.26 -94.89 REMARK 500 13 LEU A 53 148.89 171.04 REMARK 500 13 GLN A 58 -57.14 -24.20 REMARK 500 13 MET A 80 151.22 -38.60 REMARK 500 13 SER A 93 -45.02 165.83 REMARK 500 13 SER A 94 72.49 169.61 REMARK 500 14 SER A 2 81.78 41.40 REMARK 500 14 SER A 8 83.31 51.25 REMARK 500 14 PHE A 10 91.51 38.10 REMARK 500 14 GLN A 11 162.71 58.28 REMARK 500 14 ALA A 16 42.72 176.53 REMARK 500 14 GLU A 32 140.21 -177.24 REMARK 500 14 ARG A 38 -73.40 -43.76 REMARK 500 14 TYR A 48 -76.96 -43.20 REMARK 500 14 ILE A 51 97.10 -59.41 REMARK 500 14 LEU A 53 151.92 171.19 REMARK 500 14 GLN A 58 -56.35 -18.97 REMARK 500 14 MET A 80 150.52 -39.84 REMARK 500 14 SER A 90 -165.37 -116.23 REMARK 500 14 SER A 93 -72.16 69.25 REMARK 500 15 SER A 2 108.92 59.52 REMARK 500 15 SER A 8 79.62 -157.68 REMARK 500 15 PHE A 10 -55.52 -154.45 REMARK 500 15 GLN A 11 80.40 39.68 REMARK 500 15 ALA A 16 41.47 76.49 REMARK 500 15 ARG A 38 -74.85 -37.91 REMARK 500 15 LEU A 53 154.39 178.27 REMARK 500 15 GLN A 58 -52.93 -21.54 REMARK 500 15 ASP A 78 -36.06 -34.94 REMARK 500 15 MET A 80 170.32 -44.63 REMARK 500 15 SER A 94 85.93 -165.30 REMARK 500 16 SER A 8 85.90 56.32 REMARK 500 16 PHE A 10 93.11 41.85 REMARK 500 16 GLN A 11 78.89 -107.46 REMARK 500 16 ALA A 16 41.64 80.79 REMARK 500 16 GLU A 32 145.35 -178.42 REMARK 500 16 LEU A 53 142.39 173.40 REMARK 500 16 GLN A 60 -171.84 179.60 REMARK 500 16 MET A 80 172.56 -45.59 REMARK 500 16 SER A 93 -62.58 -176.71 REMARK 500 16 SER A 94 82.27 174.65 REMARK 500 17 SER A 2 96.61 -166.58 REMARK 500 17 SER A 8 84.28 39.83 REMARK 500 17 SER A 9 -61.25 -96.44 REMARK 500 17 PHE A 10 101.06 50.86 REMARK 500 17 LEU A 14 -65.32 -93.47 REMARK 500 17 GLU A 32 136.85 -178.20 REMARK 500 17 LEU A 37 -60.23 -95.49 REMARK 500 17 LEU A 53 130.01 -174.43 REMARK 500 17 GLN A 58 -44.31 -28.35 REMARK 500 17 MET A 80 167.75 -45.53 REMARK 500 17 SER A 93 70.04 60.50 REMARK 500 17 SER A 94 -56.75 -154.45 REMARK 500 18 SER A 8 78.48 59.63 REMARK 500 18 ALA A 16 31.15 83.89 REMARK 500 18 PRO A 25 -168.91 -75.03 REMARK 500 18 PHE A 33 140.23 -37.87 REMARK 500 18 LEU A 37 -62.20 -95.49 REMARK 500 18 LEU A 53 141.11 -172.92 REMARK 500 18 GLN A 58 -46.83 -26.79 REMARK 500 18 PRO A 92 -165.10 -75.07 REMARK 500 19 SER A 2 89.06 40.85 REMARK 500 19 SER A 8 82.26 62.30 REMARK 500 19 PHE A 10 94.70 54.34 REMARK 500 19 GLN A 11 166.24 175.17 REMARK 500 19 LEU A 14 -69.61 -94.11 REMARK 500 19 ALA A 16 40.32 174.20 REMARK 500 19 THR A 26 -156.87 -87.69 REMARK 500 19 GLU A 32 126.35 -176.26 REMARK 500 19 THR A 50 19.22 -151.01 REMARK 500 19 ILE A 51 89.12 36.08 REMARK 500 19 LEU A 53 152.79 177.48 REMARK 500 19 GLN A 58 -54.47 -21.38 REMARK 500 19 SER A 93 -172.24 -177.84 REMARK 500 20 PHE A 10 88.07 52.72 REMARK 500 20 GLN A 11 98.24 179.46 REMARK 500 20 ALA A 16 71.13 64.85 REMARK 500 20 THR A 26 -168.55 -102.18 REMARK 500 20 GLU A 32 133.69 -177.88 REMARK 500 20 PHE A 33 136.78 -37.72 REMARK 500 20 ARG A 38 -75.82 -38.22 REMARK 500 20 LEU A 53 148.75 179.71 REMARK 500 20 GLN A 58 -46.96 -26.73 REMARK 500 20 SER A 70 -71.82 -57.90 REMARK 500 20 ALA A 71 -38.50 -38.45 REMARK 500 20 MET A 80 168.93 -44.42 REMARK 500 20 SER A 94 -44.30 -161.74 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000339.1 RELATED DB: TARGETDB
DBREF 1UFW A 8 89 UNP O15056 SYNJ2_HUMAN 829 910
SEQADV 1UFW GLY A 1 UNP O15056 CLONING ARTIFACT SEQADV 1UFW SER A 2 UNP O15056 CLONING ARTIFACT SEQADV 1UFW SER A 3 UNP O15056 CLONING ARTIFACT SEQADV 1UFW GLY A 4 UNP O15056 CLONING ARTIFACT SEQADV 1UFW SER A 5 UNP O15056 CLONING ARTIFACT SEQADV 1UFW SER A 6 UNP O15056 CLONING ARTIFACT SEQADV 1UFW GLY A 7 UNP O15056 CLONING ARTIFACT SEQADV 1UFW SER A 90 UNP O15056 CLONING ARTIFACT SEQADV 1UFW GLY A 91 UNP O15056 CLONING ARTIFACT SEQADV 1UFW PRO A 92 UNP O15056 CLONING ARTIFACT SEQADV 1UFW SER A 93 UNP O15056 CLONING ARTIFACT SEQADV 1UFW SER A 94 UNP O15056 CLONING ARTIFACT SEQADV 1UFW GLY A 95 UNP O15056 CLONING ARTIFACT
SEQRES 1 A 95 GLY SER SER GLY SER SER GLY SER SER PHE GLN GLY PRO SEQRES 2 A 95 LEU ASP ALA THR VAL VAL VAL ASN LEU GLN SER PRO THR SEQRES 3 A 95 LEU GLU GLU LYS ASN GLU PHE PRO GLU ASP LEU ARG THR SEQRES 4 A 95 GLU LEU MET GLN THR LEU GLY SER TYR GLY THR ILE VAL SEQRES 5 A 95 LEU VAL ARG ILE ASN GLN GLY GLN MET LEU VAL THR PHE SEQRES 6 A 95 ALA ASP SER HIS SER ALA LEU SER VAL LEU ASP VAL ASP SEQRES 7 A 95 GLY MET LYS VAL LYS GLY ARG ALA VAL LYS ILE SER GLY SEQRES 8 A 95 PRO SER SER GLY
HELIX 1 1 GLY A 4 GLY A 7 1 4 HELIX 2 2 LEU A 27 ASN A 31 1 5 HELIX 3 3 GLU A 35 TYR A 48 1 14 HELIX 4 4 HIS A 69 VAL A 77 1 9
SHEET 1 A 5 LEU A 53 ASN A 57 0 SHEET 2 A 5 GLN A 60 THR A 64 -1 O THR A 64 N LEU A 53 SHEET 3 A 5 THR A 17 LEU A 22 -1 N VAL A 18 O VAL A 63 SHEET 4 A 5 ARG A 85 SER A 90 -1 O LYS A 88 N ASN A 21 SHEET 5 A 5 LYS A 81 VAL A 82 -1 N VAL A 82 O ARG A 85
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000