10 20 30 40 50 60 70 80 1U86 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 05-AUG-04 1U86
TITLE 321-TW-322 INSERTION MUTANT OF THE THIRD ZINC FINGER OF BKLF
COMPND MOL_ID: 1; COMPND 2 MOLECULE: KRUPPEL-LIKE FACTOR 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIRD ZINC FINGER; COMPND 5 SYNONYM: BASIC KRUPPEL-LIKE FACTOR, KLF3, CACCC-BOX COMPND 6 BINDING PROTEIN BKLF, TEF-2; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: BKLF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T
KEYWDS ZINC FINGER, KRUPPEL-LIKE, DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR E.D.CRAM,J.P.MACKAY,J.M.MATTHEWS
REVDAT 2 24-FEB-09 1U86 1 VERSN REVDAT 1 23-AUG-05 1U86 0
JRNL AUTH E.D.CRAM,J.P.MACKAY,J.M.MATTHEWS JRNL TITL SOLUTION STRUCTURES OF TRYPTOPHAN-CONTAINING CCHH JRNL TITL 2 ZINC FINGER MUTANTS JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.1.2 REMARK 3 AUTHORS : LINGE ET AL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE CALCULATIONS WERE REMARK 3 PERFORMED IN ARIA. THE STRUCTURES ARE BASED ON 638 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS AND 20 DIHEDRAL ANGLE RESTRAINTS
REMARK 4 REMARK 4 1U86 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-AUG-04. REMARK 100 THE RCSB ID CODE IS RCSB023366.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 280 REMARK 210 PH : 5.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM B3F+TW, 2MM TCEP, 2MM REMARK 210 ZNSO4; 0.5MM 15N-B3F+TW, 2MM REMARK 210 TCEP, 2MM ZNSO4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY, REMARK 210 HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.5, XEASY 1.3.13, REMARK 210 CYANA 1.0.6 REMARK 210 METHOD USED : SIMULATED ANNEALING MOLECULAR REMARK 210 DYNAMICS, TORSION ANGLE REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 8 50.29 -91.86 REMARK 500 2 PHE A 8 47.17 -92.16 REMARK 500 3 THR A 11 31.55 -83.41 REMARK 500 3 CYS A 15 -68.92 -101.16 REMARK 500 4 THR A 3 42.73 -105.75 REMARK 500 4 PHE A 8 49.81 -106.14 REMARK 500 4 CYS A 15 -68.69 -94.83 REMARK 500 4 LEU A 34 61.84 -103.09 REMARK 500 5 THR A 3 74.08 -119.27 REMARK 500 5 CYS A 15 -66.79 -93.42 REMARK 500 6 PHE A 8 44.91 -94.91 REMARK 500 6 CYS A 15 -73.11 -63.56 REMARK 500 6 ASP A 16 63.59 63.50 REMARK 500 6 LEU A 34 71.79 -112.54 REMARK 500 7 PHE A 8 56.16 -97.83 REMARK 500 7 THR A 11 32.64 -91.33 REMARK 500 7 CYS A 15 -73.07 -75.75 REMARK 500 7 LEU A 34 55.80 -116.38 REMARK 500 8 PHE A 8 54.16 -99.78 REMARK 500 8 CYS A 15 -73.54 -101.31 REMARK 500 9 PHE A 8 47.72 -101.33 REMARK 500 10 PHE A 8 53.54 -97.00 REMARK 500 10 CYS A 15 -74.07 -92.69 REMARK 500 10 ASP A 16 64.75 61.13 REMARK 500 11 THR A 3 48.75 -100.26 REMARK 500 11 PHE A 8 47.54 -92.38 REMARK 500 11 CYS A 15 -73.73 -100.15 REMARK 500 12 PHE A 8 57.78 -93.74 REMARK 500 12 THR A 11 30.56 -96.34 REMARK 500 12 LEU A 34 55.10 -111.20 REMARK 500 13 PHE A 8 47.30 -96.11 REMARK 500 13 CYS A 15 -73.35 -93.13 REMARK 500 14 PHE A 8 55.09 -103.24 REMARK 500 15 PHE A 8 50.06 -93.30 REMARK 500 15 CYS A 15 -67.66 -100.04 REMARK 500 15 ASP A 16 63.28 63.92 REMARK 500 16 PHE A 8 47.88 -101.46 REMARK 500 16 THR A 11 32.44 -82.12 REMARK 500 16 CYS A 15 -66.46 -100.29 REMARK 500 16 LEU A 34 67.90 -110.57 REMARK 500 17 THR A 3 33.83 -83.11 REMARK 500 17 PHE A 8 46.60 -92.85 REMARK 500 17 THR A 11 34.25 -84.29 REMARK 500 17 CYS A 15 -74.95 -81.25 REMARK 500 18 PHE A 8 46.96 -96.10 REMARK 500 18 CYS A 15 -71.74 -99.10 REMARK 500 19 THR A 3 44.95 -99.48 REMARK 500 19 PHE A 8 54.99 -92.79 REMARK 500 19 CYS A 15 -68.78 -97.44 REMARK 500 20 SER A 2 45.76 -98.07 REMARK 500 20 PHE A 8 52.86 -94.34 REMARK 500 20 CYS A 15 -75.99 -94.99 REMARK 500 20 ASP A 16 66.48 60.22 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 36 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 10 SG REMARK 620 2 CYS A 15 SG 110.4 REMARK 620 3 HIS A 28 NE2 112.3 112.3 REMARK 620 4 HIS A 32 NE2 109.7 110.4 101.4 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 36
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P7A RELATED DB: PDB REMARK 900 WILD-TYPE BKLF F3 STRUCTURE REMARK 900 RELATED ID: 1U85 RELATED DB: PDB REMARK 900 R326W MUTANT OF BKLF F3
DBREF 1U86 A 3 35 UNP Q60980 KLF3_MOUSE 314 344
SEQADV 1U86 GLY A 1 UNP Q60980 CLONING ARTIFACT SEQADV 1U86 SER A 2 UNP Q60980 CLONING ARTIFACT SEQADV 1U86 THR A 11 UNP Q60980 INSERTION SEQADV 1U86 TRP A 12 UNP Q60980 INSERTION
SEQRES 1 A 35 GLY SER THR GLY ILE LYS PRO PHE GLN CYS THR TRP PRO SEQRES 2 A 35 ASP CYS ASP ARG SER PHE SER ARG SER ASP HIS LEU ALA SEQRES 3 A 35 LEU HIS ARG LYS ARG HIS MET LEU VAL
HET ZN A 36 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 ARG A 21 ARG A 31 1 11
SHEET 1 A 2 PHE A 8 GLN A 9 0 SHEET 2 A 2 SER A 18 PHE A 19 -1 O PHE A 19 N PHE A 8
LINK ZN ZN A 36 SG CYS A 10 1555 1555 2.31 LINK ZN ZN A 36 SG CYS A 15 1555 1555 2.30 LINK ZN ZN A 36 NE2 HIS A 28 1555 1555 1.98 LINK ZN ZN A 36 NE2 HIS A 32 1555 1555 1.96
SITE 1 AC1 4 CYS A 10 CYS A 15 HIS A 28 HIS A 32
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000