10 20 30 40 50 60 70 80 1U3W - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 23-JUL-04 1U3W
TITLE CRYSTAL STRUCTURE OF HUMAN ALCOHOL DEHYDROGENASE GAMMA-2- TITLE 2 GAMMA-2 ISOFORM COMPLEXED WITH N-1-METHYLHEPTYLFORMAMIDE TITLE 3 DETERMINED TO 1.45 ANGSTROM RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE GAMMA CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALCOHOL DEHYDROGENASE GAMMA-2-GAMMA-2 ISOFORM; COMPND 5 EC: 1.1.1.1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADH1C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5-ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKK2233
KEYWDS OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR B.J.GIBBONS,T.D.HURLEY
REVDAT 2 24-FEB-09 1U3W 1 VERSN REVDAT 1 26-OCT-04 1U3W 0
JRNL AUTH B.J.GIBBONS,T.D.HURLEY JRNL TITL STRUCTURE OF THREE CLASS I HUMAN ALCOHOL JRNL TITL 2 DEHYDROGENASES COMPLEXED WITH ISOENZYME SPECIFIC JRNL TITL 3 FORMAMIDE INHIBITORS JRNL REF BIOCHEMISTRY V. 43 12555 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15449945 JRNL DOI 10.1021/BI0489107
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 110343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5964 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8042 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 424 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 819 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.33000 REMARK 3 B22 (A**2) : 2.35000 REMARK 3 B33 (A**2) : -0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5772 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7814 ; 1.842 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 746 ; 6.202 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 918 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4166 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2933 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 635 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.034 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 65 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3706 ; 1.163 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5986 ; 1.863 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2066 ; 2.801 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1828 ; 4.551 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 1U3W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUL-04. REMARK 100 THE RCSB ID CODE IS RCSB023212.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110343 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 29.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 62.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1HT0 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML ENZYME, 4MM NAD+, 50MM TRIS REMARK 280 -HCL, AND 17-19% PEG 6000, PH 9.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.56250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASSYMETRIC UNIT CONTAINS ONE HOMODIMER.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1419 O HOH A 1651 2.16 REMARK 500 OD2 ASP A 227 O HOH A 1845 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 319 CE1 PHE A 319 CZ 0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 153 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 223 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 363 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP B 125 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP B 153 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 343 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 109 -4.57 -141.04 REMARK 500 LEU A 116 -65.39 -98.54 REMARK 500 CYS A 174 -74.17 -158.70 REMARK 500 ILE A 269 -52.60 -129.92 REMARK 500 SER A 298 50.85 -118.58 REMARK 500 ILE A 368 -91.28 -96.58 REMARK 500 HIS B 67 -0.65 -151.63 REMARK 500 ASN B 109 -3.89 -141.31 REMARK 500 CYS B 174 -75.25 -155.95 REMARK 500 ILE B 269 -54.76 -124.02 REMARK 500 ILE B 368 -90.75 -92.12 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1733 DISTANCE = 6.92 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 100 SG 106.7 REMARK 620 3 CYS A 103 SG 117.0 107.1 REMARK 620 4 CYS A 111 SG 103.0 119.4 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 HIS A 67 NE2 105.0 REMARK 620 3 CYS A 174 SG 131.6 115.3 REMARK 620 4 FXY A1378 O10 99.5 87.9 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 CYS B 100 SG 108.2 REMARK 620 3 CYS B 103 SG 114.9 107.9 REMARK 620 4 CYS B 111 SG 104.6 117.5 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 46 SG REMARK 620 2 HIS B 67 NE2 107.1 REMARK 620 3 CYS B 174 SG 128.8 115.3 REMARK 620 4 FXY B2378 O10 105.3 87.0 104.3 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 375 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 376 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 375 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 376 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1377 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 2377 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FXY A 1378 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FXY B 2378
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HT0 RELATED DB: PDB REMARK 900 HUMAN ALCOHOL DEHYDROGENASE, GAMMA-2-GAMMA-2 ISOENZYME REMARK 900 RELATED ID: 1U3T RELATED DB: PDB REMARK 900 HUMAN ALCOHOL DEHYDROGENASE ALPHA-ALPHA ISOFORM COMPLEXED REMARK 900 WITH N-CYCLOPENTYL-N-CYCLOBUTYLFORMAMIDE DETERMINED TO 2.5 REMARK 900 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1U3U RELATED DB: PDB REMARK 900 HUMAN ALCOHOL DEHYDROGENASE BETA-1-BETA-1 ISOFORM COMPLEXED REMARK 900 WITH N-BENZYLFORMAMIDE DETERMINED TO 1.6 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1U3V RELATED DB: PDB REMARK 900 HUMAN ALCOHOL DEHYDROGENASE BETA-1-BETA-1 ISOFORM COMPLEXED REMARK 900 WITH N-HEPTYLFORMAMIDE DETERMINED TO 1.65 ANGSTROM REMARK 900 RESOLUTION
DBREF 1U3W A 1 374 UNP P00326 ADHG_HUMAN 1 374 DBREF 1U3W B 1 374 UNP P00326 ADHG_HUMAN 1 374
SEQADV 1U3W GLN A 271 UNP P00326 ARG 271 SEE REMARK 999 SEQADV 1U3W VAL A 349 UNP P00326 ILE 349 SEE REMARK 999 SEQADV 1U3W GLN B 271 UNP P00326 ARG 271 SEE REMARK 999 SEQADV 1U3W VAL B 349 UNP P00326 ILE 349 SEE REMARK 999
SEQRES 1 A 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 A 374 LEU TRP GLU LEU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 A 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 A 374 MET VAL ALA ALA GLY ILE CYS ARG SER ASP GLU HIS VAL SEQRES 5 A 374 VAL SER GLY ASN LEU VAL THR PRO LEU PRO VAL ILE LEU SEQRES 6 A 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER VAL GLY GLU SEQRES 7 A 374 GLY VAL THR THR VAL LYS PRO GLY ASP LYS VAL ILE PRO SEQRES 8 A 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG ILE CYS LYS SEQRES 9 A 374 ASN PRO GLU SER ASN TYR CYS LEU LYS ASN ASP LEU GLY SEQRES 10 A 374 ASN PRO ARG GLY THR LEU GLN ASP GLY THR ARG ARG PHE SEQRES 11 A 374 THR CYS SER GLY LYS PRO ILE HIS HIS PHE VAL GLY VAL SEQRES 12 A 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ASN ALA SEQRES 13 A 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 A 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 A 374 ALA VAL LYS VAL ALA LYS VAL THR PRO GLY SER THR CYS SEQRES 16 A 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER VAL VAL SEQRES 17 A 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE ALA SEQRES 18 A 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 A 374 LEU GLY ALA THR GLU CYS ILE ASN PRO GLN ASP TYR LYS SEQRES 20 A 374 LYS PRO ILE GLN GLU VAL LEU LYS GLU MET THR ASP GLY SEQRES 21 A 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY GLN LEU ASP SEQRES 22 A 374 THR MET MET ALA SER LEU LEU CYS CYS HIS GLU ALA CYS SEQRES 23 A 374 GLY THR SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 A 374 ASN LEU SER ILE ASN PRO MET LEU LEU LEU THR GLY ARG SEQRES 25 A 374 THR TRP LYS GLY ALA ILE PHE GLY GLY PHE LYS SER LYS SEQRES 26 A 374 GLU SER VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 A 374 LYS PHE SER LEU ASP ALA LEU ILE THR ASN VAL LEU PRO SEQRES 28 A 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU ARG SER SEQRES 29 A 374 GLY LYS SER ILE ARG THR VAL LEU THR PHE SEQRES 1 B 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 B 374 LEU TRP GLU LEU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 B 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 B 374 MET VAL ALA ALA GLY ILE CYS ARG SER ASP GLU HIS VAL SEQRES 5 B 374 VAL SER GLY ASN LEU VAL THR PRO LEU PRO VAL ILE LEU SEQRES 6 B 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER VAL GLY GLU SEQRES 7 B 374 GLY VAL THR THR VAL LYS PRO GLY ASP LYS VAL ILE PRO SEQRES 8 B 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG ILE CYS LYS SEQRES 9 B 374 ASN PRO GLU SER ASN TYR CYS LEU LYS ASN ASP LEU GLY SEQRES 10 B 374 ASN PRO ARG GLY THR LEU GLN ASP GLY THR ARG ARG PHE SEQRES 11 B 374 THR CYS SER GLY LYS PRO ILE HIS HIS PHE VAL GLY VAL SEQRES 12 B 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ASN ALA SEQRES 13 B 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 B 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 B 374 ALA VAL LYS VAL ALA LYS VAL THR PRO GLY SER THR CYS SEQRES 16 B 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER VAL VAL SEQRES 17 B 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE ALA SEQRES 18 B 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 B 374 LEU GLY ALA THR GLU CYS ILE ASN PRO GLN ASP TYR LYS SEQRES 20 B 374 LYS PRO ILE GLN GLU VAL LEU LYS GLU MET THR ASP GLY SEQRES 21 B 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY GLN LEU ASP SEQRES 22 B 374 THR MET MET ALA SER LEU LEU CYS CYS HIS GLU ALA CYS SEQRES 23 B 374 GLY THR SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 B 374 ASN LEU SER ILE ASN PRO MET LEU LEU LEU THR GLY ARG SEQRES 25 B 374 THR TRP LYS GLY ALA ILE PHE GLY GLY PHE LYS SER LYS SEQRES 26 B 374 GLU SER VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 B 374 LYS PHE SER LEU ASP ALA LEU ILE THR ASN VAL LEU PRO SEQRES 28 B 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU ARG SER SEQRES 29 B 374 GLY LYS SER ILE ARG THR VAL LEU THR PHE
HET ZN A 375 1 HET ZN A 376 1 HET ZN B 375 1 HET ZN B 376 1 HET NAD A1377 44 HET NAD B2377 44 HET FXY A1378 11 HET FXY B2378 11
HETNAM ZN ZINC ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM FXY 1-METHYLHEPTYLFORMAMIDE
HETSYN FXY N-1-METHYLHEPTYLFORMAMIDE
FORMUL 3 ZN 4(ZN 2+) FORMUL 7 NAD 2(C21 H27 N7 O14 P2) FORMUL 9 FXY 2(C9 H19 N O) FORMUL 11 HOH *819(H2 O)
HELIX 1 1 CYS A 46 SER A 54 1 9 HELIX 2 2 CYS A 100 ASN A 105 1 6 HELIX 3 3 PRO A 165 CYS A 170 1 6 HELIX 4 4 LEU A 171 GLY A 173 5 3 HELIX 5 5 CYS A 174 LYS A 185 1 12 HELIX 6 6 GLY A 201 ALA A 214 1 14 HELIX 7 7 ASN A 225 ASP A 227 5 3 HELIX 8 8 LYS A 228 LEU A 235 1 8 HELIX 9 9 ASN A 242 TYR A 246 5 5 HELIX 10 10 PRO A 249 THR A 258 1 10 HELIX 11 11 GLN A 271 CYS A 282 1 12 HELIX 12 12 PRO A 305 THR A 310 1 6 HELIX 13 13 ILE A 318 PHE A 322 5 5 HELIX 14 14 LYS A 323 ALA A 337 1 15 HELIX 15 15 LEU A 342 ALA A 344 5 3 HELIX 16 16 LYS A 354 SER A 364 1 11 HELIX 17 17 CYS B 46 SER B 54 1 9 HELIX 18 18 CYS B 100 ASN B 105 1 6 HELIX 19 19 PRO B 165 CYS B 170 1 6 HELIX 20 20 LEU B 171 GLY B 173 5 3 HELIX 21 21 CYS B 174 LYS B 185 1 12 HELIX 22 22 GLY B 201 ALA B 214 1 14 HELIX 23 23 ASN B 225 ASP B 227 5 3 HELIX 24 24 LYS B 228 LEU B 235 1 8 HELIX 25 25 ASN B 242 TYR B 246 5 5 HELIX 26 26 PRO B 249 THR B 258 1 10 HELIX 27 27 GLN B 271 CYS B 282 1 12 HELIX 28 28 PRO B 305 THR B 310 1 6 HELIX 29 29 ILE B 318 PHE B 322 5 5 HELIX 30 30 LYS B 323 ALA B 337 1 15 HELIX 31 31 LEU B 342 ALA B 344 5 3 HELIX 32 32 LYS B 354 SER B 364 1 11
SHEET 1 A 5 VAL A 63 ILE A 64 0 SHEET 2 A 5 ILE A 7 LEU A 14 -1 N LEU A 14 O VAL A 63 SHEET 3 A 5 SER A 22 VAL A 28 -1 O SER A 22 N VAL A 13 SHEET 4 A 5 PHE A 130 CYS A 132 -1 O THR A 131 N GLU A 27 SHEET 5 A 5 LYS A 135 ILE A 137 -1 O LYS A 135 N CYS A 132 SHEET 1 B 5 TYR A 149 ASP A 153 0 SHEET 2 B 5 GLU A 35 GLY A 44 -1 N ILE A 38 O THR A 150 SHEET 3 B 5 ALA A 69 VAL A 76 -1 O GLU A 74 N ARG A 37 SHEET 4 B 5 LYS A 88 PRO A 91 -1 O VAL A 89 N GLY A 71 SHEET 5 B 5 VAL A 157 LYS A 159 -1 O ALA A 158 N ILE A 90 SHEET 1 C 4 TYR A 149 ASP A 153 0 SHEET 2 C 4 GLU A 35 GLY A 44 -1 N ILE A 38 O THR A 150 SHEET 3 C 4 ARG A 369 THR A 373 -1 O LEU A 372 N ALA A 43 SHEET 4 C 4 ILE A 346 PRO A 351 1 N LEU A 350 O THR A 373 SHEET 1 D12 GLU A 239 ILE A 241 0 SHEET 2 D12 ARG A 218 VAL A 222 1 N ALA A 221 O GLU A 239 SHEET 3 D12 THR A 194 PHE A 198 1 N VAL A 197 O VAL A 222 SHEET 4 D12 PHE A 264 GLU A 267 1 O PHE A 266 N PHE A 198 SHEET 5 D12 THR A 288 ILE A 291 1 O VAL A 290 N SER A 265 SHEET 6 D12 THR A 313 GLY A 316 1 O THR A 313 N SER A 289 SHEET 7 D12 THR B 313 GLY B 316 -1 O TRP B 314 N TRP A 314 SHEET 8 D12 THR B 288 ILE B 291 1 N SER B 289 O THR B 313 SHEET 9 D12 PHE B 264 GLU B 267 1 N SER B 265 O VAL B 290 SHEET 10 D12 THR B 194 PHE B 198 1 N PHE B 198 O PHE B 266 SHEET 11 D12 ARG B 218 VAL B 222 1 O ILE B 220 N CYS B 195 SHEET 12 D12 GLU B 239 ILE B 241 1 O ILE B 241 N ALA B 221 SHEET 1 E 2 LEU A 301 ILE A 303 0 SHEET 2 E 2 LEU B 301 ILE B 303 -1 O LEU B 301 N ILE A 303 SHEET 1 F 5 VAL B 63 ILE B 64 0 SHEET 2 F 5 ILE B 7 LEU B 14 -1 N LEU B 14 O VAL B 63 SHEET 3 F 5 SER B 22 VAL B 28 -1 O VAL B 26 N CYS B 9 SHEET 4 F 5 PHE B 130 CYS B 132 -1 O THR B 131 N GLU B 27 SHEET 5 F 5 LYS B 135 ILE B 137 -1 O LYS B 135 N CYS B 132 SHEET 1 G 5 TYR B 149 ASP B 153 0 SHEET 2 G 5 GLU B 35 GLY B 44 -1 N ILE B 38 O THR B 150 SHEET 3 G 5 GLU B 68 VAL B 76 -1 O GLU B 68 N GLY B 44 SHEET 4 G 5 LYS B 88 PRO B 91 -1 O VAL B 89 N GLY B 71 SHEET 5 G 5 VAL B 157 LYS B 159 -1 O ALA B 158 N ILE B 90 SHEET 1 H 4 TYR B 149 ASP B 153 0 SHEET 2 H 4 GLU B 35 GLY B 44 -1 N ILE B 38 O THR B 150 SHEET 3 H 4 ARG B 369 THR B 373 -1 O LEU B 372 N ALA B 43 SHEET 4 H 4 ILE B 346 PRO B 351 1 N LEU B 350 O THR B 373
LINK ZN ZN A 375 SG CYS A 97 1555 1555 2.38 LINK ZN ZN A 375 SG CYS A 100 1555 1555 2.42 LINK ZN ZN A 375 SG CYS A 103 1555 1555 2.29 LINK ZN ZN A 375 SG CYS A 111 1555 1555 2.35 LINK ZN ZN A 376 SG CYS A 46 1555 1555 2.33 LINK ZN ZN A 376 NE2 HIS A 67 1555 1555 2.03 LINK ZN ZN A 376 SG CYS A 174 1555 1555 2.04 LINK ZN ZN B 375 SG CYS B 97 1555 1555 2.32 LINK ZN ZN B 375 SG CYS B 100 1555 1555 2.33 LINK ZN ZN B 375 SG CYS B 103 1555 1555 2.32 LINK ZN ZN B 375 SG CYS B 111 1555 1555 2.48 LINK ZN ZN B 376 SG CYS B 46 1555 1555 2.34 LINK ZN ZN B 376 NE2 HIS B 67 1555 1555 2.07 LINK ZN ZN B 376 SG CYS B 174 1555 1555 2.14 LINK ZN ZN A 376 O10 FXY A1378 1555 1555 2.30 LINK ZN ZN B 376 O10 FXY B2378 1555 1555 2.18
CISPEP 1 LEU A 61 PRO A 62 0 2.58 CISPEP 2 LEU B 61 PRO B 62 0 4.12
SITE 1 AC1 4 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 1 AC2 5 CYS A 46 HIS A 67 CYS A 174 NAD A1377 SITE 2 AC2 5 FXY A1378 SITE 1 AC3 4 CYS B 97 CYS B 100 CYS B 103 CYS B 111 SITE 1 AC4 5 CYS B 46 HIS B 67 CYS B 174 NAD B2377 SITE 2 AC4 5 FXY B2378 SITE 1 AC5 33 ARG A 47 SER A 48 HIS A 51 CYS A 174 SITE 2 AC5 33 THR A 178 GLY A 199 GLY A 201 GLY A 202 SITE 3 AC5 33 VAL A 203 ASP A 223 ILE A 224 LYS A 228 SITE 4 AC5 33 VAL A 268 ILE A 269 GLN A 271 THR A 274 SITE 5 AC5 33 VAL A 292 GLY A 293 VAL A 294 ALA A 317 SITE 6 AC5 33 ILE A 318 PHE A 319 LEU A 362 ARG A 369 SITE 7 AC5 33 ZN A 376 FXY A1378 HOH A1379 HOH A1389 SITE 8 AC5 33 HOH A1406 HOH A1464 HOH A1487 HOH A1731 SITE 9 AC5 33 HOH A1818 SITE 1 AC6 34 ARG B 47 SER B 48 HIS B 51 CYS B 174 SITE 2 AC6 34 THR B 178 GLY B 199 GLY B 201 GLY B 202 SITE 3 AC6 34 VAL B 203 ASP B 223 ILE B 224 LYS B 228 SITE 4 AC6 34 VAL B 268 ILE B 269 GLN B 271 VAL B 292 SITE 5 AC6 34 GLY B 293 VAL B 294 ALA B 317 ILE B 318 SITE 6 AC6 34 PHE B 319 LEU B 362 ARG B 369 ZN B 376 SITE 7 AC6 34 FXY B2378 HOH B2379 HOH B2390 HOH B2416 SITE 8 AC6 34 HOH B2440 HOH B2497 HOH B2531 HOH B2618 SITE 9 AC6 34 HOH B2659 HOH B2679 SITE 1 AC7 7 CYS A 46 SER A 48 HIS A 67 PHE A 93 SITE 2 AC7 7 CYS A 174 ZN A 376 NAD A1377 SITE 1 AC8 8 MET A 306 CYS B 46 SER B 48 HIS B 67 SITE 2 AC8 8 PHE B 93 CYS B 174 ZN B 376 NAD B2377
CRYST1 55.361 67.125 92.725 90.00 103.75 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018063 0.000000 0.004418 0.00000
SCALE2 0.000000 0.014898 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011103 0.00000