10 20 30 40 50 60 70 80 1U39 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN TRANSPORT 21-JUL-04 1U39
TITLE AUTO-INHIBITION MECHANISM OF X11S/MINTS FAMILY SCAFFOLD TITLE 2 PROTEINS REVEALED BY THE CLOSED CONFORMATION OF THE TANDEM TITLE 3 PDZ DOMAINS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING, COMPND 3 FAMILY A, MEMBER 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PDZ2 DOMAIN; COMPND 6 SYNONYM: X11ALPHA/MINT1, PHOSPHOTYROSINE-BINDING/- COMPND 7 INTERACTING DOMAIN (PTB)-BEARING PROTEIN, NEURONAL MUNC18- COMPND 8 1-INTERACTING PROTEIN 1, NEURON-SPECIFIC X11 PROTEIN, COMPND 9 ADAPTOR PROTEIN X11ALPHA; COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32A
KEYWDS X11S/MINTS, PDZ DOMAIN, SCAFFOLD PROTEIN, PROTEIN KEYWDS 2 TRAFFICKING, PROTEIN TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 20
MDLTYP MINIMIZED AVERAGE
AUTHOR W.FENG,J.-F.LONG,L.-N.CHAN,C.HE,A.FU,J.XIA,N.Y.IP,M.ZHANG
REVDAT 3 24-FEB-09 1U39 1 VERSN REVDAT 2 13-SEP-05 1U39 1 JRNL REVDAT 1 26-JUL-05 1U39 0
JRNL AUTH J.-F.LONG,W.FENG,R.WANG,L.-N.CHAN,F.C.IP,J.XIA, JRNL AUTH 2 N.Y.IP,M.ZHANG JRNL TITL AUTOINHIBITION OF X11/MINT SCAFFOLD PROTEINS JRNL TITL 2 REVEALED BY THE CLOSED CONFORMATION OF THE PDZ JRNL TITL 3 TANDEM JRNL REF NAT.STRUCT.MOL.BIOL. V. 12 722 2005 JRNL REFN ISSN 1545-9993 JRNL PMID 16007100 JRNL DOI 10.1038/NSMB958
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1U39 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-04. REMARK 100 THE RCSB ID CODE IS RCSB023189.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100MM POTASSIUM PHOSPHATE REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 1.0MM UNIFORMLY 15N LABELLED REMARK 210 PDZ2 IN 90% H2O, 10% D2O; REMARK 210 100MM POTASSIUM PHOSPHATE; REMARK 210 1.0MM UNIFORMLY 15N/13C REMARK 210 LABELLED PDZ2 IN 90% H2O, 10% REMARK 210 D2O; 100MM POTASSIUM REMARK 210 PHOSPHATE; 1.0MM UNIFORMLY REMARK 210 15N/13C LABELLED PDZ2 IN 99.9% REMARK 210 D2O; 100MM POTASSIUM PHOSPHATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, HNCO, REMARK 210 HNCACB, CBCA(CO)NH, 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 101 -68.51 65.36 REMARK 500 1 CYS A 105 -71.68 -109.59 REMARK 500 1 ARG A 109 82.74 -63.58 REMARK 500 1 VAL A 118 114.92 -37.59 REMARK 500 1 VAL A 120 101.76 -48.11 REMARK 500 1 ILE A 125 -84.51 -151.54 REMARK 500 1 ASN A 128 18.64 59.84 REMARK 500 1 ALA A 147 79.21 -103.62 REMARK 500 2 LEU A 91 30.87 -96.19 REMARK 500 2 CYS A 105 -65.62 -108.00 REMARK 500 2 ARG A 109 71.92 -67.97 REMARK 500 2 VAL A 118 -64.26 -29.58 REMARK 500 2 ARG A 119 178.70 61.71 REMARK 500 2 ILE A 125 -84.46 -137.18 REMARK 500 3 ASN A 101 -68.19 64.34 REMARK 500 3 CYS A 105 -79.48 -106.46 REMARK 500 3 LEU A 107 101.86 -174.16 REMARK 500 3 ARG A 109 78.20 -66.03 REMARK 500 3 VAL A 118 -83.31 -15.11 REMARK 500 3 ARG A 119 143.19 62.56 REMARK 500 3 ILE A 125 -86.66 -157.79 REMARK 500 3 PRO A 136 164.09 -47.92 REMARK 500 4 PHE A 97 145.14 -175.55 REMARK 500 4 CYS A 105 -67.35 -94.97 REMARK 500 4 ARG A 109 44.14 -93.40 REMARK 500 4 VAL A 118 148.80 -34.13 REMARK 500 4 ILE A 125 -84.46 -128.29 REMARK 500 4 ALA A 147 52.59 -118.06 REMARK 500 4 VAL A 148 -178.48 -53.50 REMARK 500 5 PRO A 80 88.87 -52.05 REMARK 500 5 ASP A 90 -169.17 -127.50 REMARK 500 5 CYS A 105 -84.28 -94.29 REMARK 500 5 ARG A 109 80.79 -63.89 REMARK 500 5 VAL A 118 -81.98 -15.72 REMARK 500 5 ARG A 119 129.05 63.84 REMARK 500 5 ILE A 125 -84.50 -146.07 REMARK 500 5 PRO A 136 156.97 -49.72 REMARK 500 6 ASN A 101 -70.66 64.69 REMARK 500 6 ARG A 109 91.00 -55.21 REMARK 500 6 ILE A 125 -83.02 -147.14 REMARK 500 6 PRO A 157 109.38 -50.92 REMARK 500 7 LEU A 95 -61.35 -96.98 REMARK 500 7 PHE A 97 -171.96 -176.68 REMARK 500 7 ASN A 101 -64.64 65.18 REMARK 500 7 CYS A 105 -77.73 -105.42 REMARK 500 7 VAL A 118 145.72 -31.75 REMARK 500 7 ILE A 125 -82.99 -149.38 REMARK 500 7 PRO A 136 164.20 -42.77 REMARK 500 7 ALA A 147 58.19 -116.98 REMARK 500 7 VAL A 148 173.70 -53.28 REMARK 500 8 PRO A 80 62.57 -66.64 REMARK 500 8 ASN A 101 -67.16 64.94 REMARK 500 8 CYS A 105 -80.11 -97.81 REMARK 500 8 ARG A 109 47.52 -90.87 REMARK 500 8 VAL A 118 116.56 -31.87 REMARK 500 8 VAL A 120 108.42 -46.99 REMARK 500 8 ILE A 125 -84.79 -141.42 REMARK 500 8 ALA A 147 56.39 -116.82 REMARK 500 8 VAL A 148 -177.96 -54.21 REMARK 500 9 ASN A 101 -73.94 63.89 REMARK 500 9 CYS A 105 -67.54 -105.59 REMARK 500 9 ARG A 109 72.21 -68.70 REMARK 500 9 VAL A 118 129.47 -38.50 REMARK 500 9 ILE A 125 -85.04 -154.79 REMARK 500 9 PRO A 136 164.16 -48.27 REMARK 500 9 VAL A 148 -173.63 44.44 REMARK 500 10 ASN A 101 18.97 56.59 REMARK 500 10 CYS A 105 -75.39 -108.89 REMARK 500 10 ARG A 109 45.53 -91.96 REMARK 500 10 VAL A 118 153.19 -35.49 REMARK 500 10 ILE A 124 156.70 -46.16 REMARK 500 10 ILE A 125 -86.06 -153.89 REMARK 500 10 ASN A 128 26.51 48.18 REMARK 500 10 ALA A 147 59.52 -117.62 REMARK 500 10 VAL A 148 175.70 -54.74 REMARK 500 11 CYS A 105 -72.18 -106.15 REMARK 500 11 ARG A 109 44.47 -93.25 REMARK 500 11 VAL A 118 136.87 -24.91 REMARK 500 11 VAL A 120 100.21 -57.11 REMARK 500 11 ILE A 125 -84.71 -148.59 REMARK 500 11 VAL A 148 -171.38 44.86 REMARK 500 12 GLN A 94 -177.83 -66.42 REMARK 500 12 ASN A 101 18.91 58.26 REMARK 500 12 SER A 106 141.24 -178.19 REMARK 500 12 ARG A 109 86.49 -58.81 REMARK 500 12 VAL A 118 102.04 -31.25 REMARK 500 12 VAL A 120 99.99 -53.76 REMARK 500 12 ILE A 124 157.85 -48.09 REMARK 500 12 ILE A 125 -83.37 -150.73 REMARK 500 12 VAL A 148 -174.68 45.96 REMARK 500 13 CYS A 105 -81.10 -116.82 REMARK 500 13 ARG A 109 76.71 -66.13 REMARK 500 13 VAL A 118 123.70 -26.43 REMARK 500 13 VAL A 120 93.23 -52.20 REMARK 500 13 ILE A 125 -84.31 -147.45 REMARK 500 14 PRO A 80 85.77 -69.76 REMARK 500 14 ASP A 90 -169.38 -173.07 REMARK 500 14 CYS A 105 -80.64 -126.51 REMARK 500 14 VAL A 118 135.90 -37.95 REMARK 500 14 VAL A 120 89.45 -57.11 REMARK 500 14 ILE A 125 -85.66 -150.77 REMARK 500 14 VAL A 148 164.61 57.01 REMARK 500 15 ARG A 88 97.81 -164.57 REMARK 500 15 ASN A 101 18.28 57.78 REMARK 500 15 CYS A 105 -77.98 -105.00 REMARK 500 15 MET A 108 98.26 -68.13 REMARK 500 15 VAL A 118 146.36 -34.27 REMARK 500 15 ILE A 124 158.21 -49.98 REMARK 500 15 ILE A 125 -82.70 -148.99 REMARK 500 15 VAL A 148 -172.67 44.56 REMARK 500 16 LEU A 95 -67.62 -93.61 REMARK 500 16 PHE A 97 177.41 179.96 REMARK 500 16 LEU A 107 116.46 -167.25 REMARK 500 16 VAL A 118 147.24 -30.76 REMARK 500 16 VAL A 120 95.75 -62.00 REMARK 500 16 HIS A 122 -165.98 -125.32 REMARK 500 16 ILE A 125 -84.48 -150.31 REMARK 500 16 ALA A 147 54.88 -117.89 REMARK 500 16 VAL A 148 177.61 -50.78 REMARK 500 17 TYR A 93 -177.44 -60.30 REMARK 500 17 ASN A 101 18.74 57.11 REMARK 500 17 CYS A 105 -69.89 -106.44 REMARK 500 17 ARG A 109 78.88 -65.05 REMARK 500 17 VAL A 118 144.58 -30.34 REMARK 500 17 VAL A 120 90.79 -56.05 REMARK 500 17 ILE A 125 -82.84 -137.97 REMARK 500 17 ALA A 147 63.45 -119.26 REMARK 500 17 VAL A 148 -157.28 -60.11 REMARK 500 18 ASN A 101 17.25 58.25 REMARK 500 18 CYS A 105 -75.62 -84.62 REMARK 500 18 ARG A 109 76.14 -67.18 REMARK 500 18 VAL A 118 -71.46 -29.75 REMARK 500 18 ARG A 119 136.12 64.32 REMARK 500 18 ILE A 125 -84.80 -137.11 REMARK 500 18 ASN A 128 17.87 57.82 REMARK 500 18 PRO A 136 164.04 -49.65 REMARK 500 18 ALA A 147 55.26 -118.65 REMARK 500 18 VAL A 148 174.89 -55.84 REMARK 500 19 TYR A 93 174.72 -56.69 REMARK 500 19 ASN A 101 18.04 59.67 REMARK 500 19 LEU A 107 116.54 -162.26 REMARK 500 19 ARG A 109 79.50 -65.44 REMARK 500 19 VAL A 118 108.21 -40.46 REMARK 500 19 VAL A 120 92.61 -54.06 REMARK 500 19 ILE A 125 -83.98 -136.65 REMARK 500 20 PRO A 80 90.03 -51.73 REMARK 500 20 LEU A 95 -66.67 -91.42 REMARK 500 20 CYS A 105 -78.79 -100.52 REMARK 500 20 VAL A 118 128.07 -34.70 REMARK 500 20 ILE A 124 159.14 -49.71 REMARK 500 20 ILE A 125 -82.23 -148.79 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U37 RELATED DB: PDB REMARK 900 THE SAME PROTEIN, PDZ1 DOMAIN, 20 STRUCTURES REMARK 900 RELATED ID: 1U38 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX WITH C-PEPTIDE, 20 STRUCTURES REMARK 900 RELATED ID: 1U3B RELATED DB: PDB REMARK 900 THE SAME PROTEIN, PDZ12C DOMAIN, MINIMIZED AVERAGE STRUCTURE
DBREF 1U39 A 79 158 UNP Q02410 APBA1_HUMAN 743 822
SEQRES 1 A 80 PRO PRO VAL THR THR VAL LEU ILE ARG ARG PRO ASP LEU SEQRES 2 A 80 ARG TYR GLN LEU GLY PHE SER VAL GLN ASN GLY ILE ILE SEQRES 3 A 80 CYS SER LEU MET ARG GLY GLY ILE ALA GLU ARG GLY GLY SEQRES 4 A 80 VAL ARG VAL GLY HIS ARG ILE ILE GLU ILE ASN GLY GLN SEQRES 5 A 80 SER VAL VAL ALA THR PRO HIS GLU LYS ILE VAL HIS ILE SEQRES 6 A 80 LEU SER ASN ALA VAL GLY GLU ILE HIS MET LYS THR MET SEQRES 7 A 80 PRO ALA
HELIX 1 1 ILE A 112 GLY A 117 1 6 HELIX 2 2 VAL A 133 THR A 135 5 3 HELIX 3 3 PRO A 136 ASN A 146 1 11
SHEET 1 A 4 THR A 82 ARG A 87 0 SHEET 2 A 4 GLU A 150 MET A 156 -1 O ILE A 151 N ILE A 86 SHEET 3 A 4 ARG A 123 ILE A 127 -1 N ILE A 125 O LYS A 154 SHEET 4 A 4 GLN A 130 SER A 131 -1 O GLN A 130 N ILE A 127 SHEET 1 B 2 PHE A 97 GLN A 100 0 SHEET 2 B 2 ILE A 103 LEU A 107 -1 O ILE A 103 N GLN A 100
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000