1U0T - Header Asymmetric Unit

HEADER SIGNALING PROTEIN, TRANSFERASE 14-JUL-04 1U0T

TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS NAD KINASE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: INORGANIC POLYPHOSPHATE/ATP-NAD KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POLYP, /ATP NAD KINASE; COMPND 5 EC: 2.7.1.23; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: PPNK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562

KEYWDS ALPHA-BETA; BETA SANDWICH, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, KEYWDS 3 SIGNALING PROTEIN, TRANSFERASE

EXPDTA X-RAY DIFFRACTION

AUTHOR S.GARAVAGLIA,N.RAFFAELLI,L.FINAURINI,G.MAGNI,M.RIZZI,TB STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (TBSGC)

REVDAT 5 13-JUL-11 1U0T 1 VERSN REVDAT 4 24-FEB-09 1U0T 1 VERSN REVDAT 3 01-FEB-05 1U0T 1 AUTHOR KEYWDS REMARK REVDAT 2 12-OCT-04 1U0T 1 HEADER JRNL REVDAT 1 31-AUG-04 1U0T 0

JRNL AUTH S.GARAVAGLIA,N.RAFFAELLI,L.FINAURINI,G.MAGNI,M.RIZZI JRNL TITL A NOVEL FOLD REVEALED BY MYCOBACTERIUM TUBERCULOSIS NAD JRNL TITL 2 KINASE, A KEY ALLOSTERIC ENZYME IN NADP BIOSYNTHESIS JRNL REF J.BIOL.CHEM. V. 279 40980 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15269221 JRNL DOI 10.1074/JBC.M406586200

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.RAFFAELLI,L.FINAURINI,F.MAZZOLA,L.PUCCI,L.SORCI,A.AMICI, REMARK 1 AUTH 2 G.MAGNI REMARK 1 TITL CHARACTERIZATION OF MYCOBACTERIUM TUBERCULOSIS NAD KINASE: REMARK 1 TITL 2 FUNCTIONAL ANALYSIS OF THE FULL-LENGTH ENZYME BY REMARK 1 TITL 3 SITE-DIRECTED MUTAGENESIS REMARK 1 REF BIOCHEMISTRY V. 43 7610 2004 REMARK 1 REFN ISSN 0006-2960

REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 28131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 941 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1992 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.76000 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : -1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.343 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.267 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.168 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.844 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4220 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5740 ; 1.901 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 547 ; 6.952 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 685 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3180 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1869 ; 0.249 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 285 ; 0.217 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.261 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2721 ; 0.964 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4373 ; 1.760 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1499 ; 2.831 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1367 ; 4.508 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1U0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-04. REMARK 100 THE RCSB ID CODE IS RCSB023103.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29110 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MES BUFFER, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 6.00

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.37850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.82750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.37850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.82750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 64.75700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 HIS A 4 REMARK 465 ALA A 41 REMARK 465 GLU A 42 REMARK 465 ALA A 43 REMARK 465 VAL A 44 REMARK 465 ASP A 45 REMARK 465 ARG A 46 REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 LEU A 49 REMARK 465 HIS A 50 REMARK 465 LEU A 51 REMARK 465 ALA A 52 REMARK 465 PRO A 53 REMARK 465 ASP A 54 REMARK 465 ASP A 55 REMARK 465 MET A 56 REMARK 465 ARG A 57 REMARK 465 ALA A 58 REMARK 465 MET A 59 REMARK 465 GLY A 60 REMARK 465 VAL A 61 REMARK 465 GLU A 62 REMARK 465 ILE A 63 REMARK 465 GLU A 64 REMARK 465 VAL A 65 REMARK 465 VAL A 66 REMARK 465 ASP A 67 REMARK 465 ALA A 68 REMARK 465 ASP A 69 REMARK 465 GLN A 70 REMARK 465 HIS A 71 REMARK 465 ALA A 72 REMARK 465 ALA A 73 REMARK 465 ASP A 74 REMARK 465 GLY A 75 REMARK 465 LYS A 307 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 HIS B 4 REMARK 465 GLU B 42 REMARK 465 ALA B 43 REMARK 465 VAL B 44 REMARK 465 ASP B 45 REMARK 465 ARG B 46 REMARK 465 GLY B 47 REMARK 465 SER B 48 REMARK 465 LEU B 49 REMARK 465 HIS B 50 REMARK 465 LEU B 51 REMARK 465 ALA B 52 REMARK 465 PRO B 53 REMARK 465 ASP B 54 REMARK 465 ASP B 55 REMARK 465 MET B 56 REMARK 465 ARG B 57 REMARK 465 ALA B 58 REMARK 465 MET B 59 REMARK 465 GLY B 60 REMARK 465 VAL B 61 REMARK 465 GLU B 62 REMARK 465 ILE B 63 REMARK 465 GLU B 64 REMARK 465 VAL B 65 REMARK 465 VAL B 66 REMARK 465 ASP B 67 REMARK 465 ALA B 68

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 17 CD OE1 OE2 REMARK 470 GLU A 77 CD OE1 OE2 REMARK 470 GLU A 93 CD OE1 OE2 REMARK 470 ARG B 5 N REMARK 470 GLU B 77 CD OE1 OE2

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 188 O HOH B 453 1.71 REMARK 500 O HOH B 310 O HOH B 432 1.89 REMARK 500 O ILE B 178 O THR B 240 1.91 REMARK 500 SG CYS A 188 O HOH A 423 1.98 REMARK 500 CD2 LEU B 172 O HOH B 375 2.09 REMARK 500 O HOH A 382 O HOH A 418 2.11 REMARK 500 OE1 GLU A 244 O TRP B 304 2.15 REMARK 500 O HOH A 346 O HOH B 449 2.18 REMARK 500 OE1 GLU A 177 CB ALA A 242 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 16 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 LEU A 139 CA - CB - CG ANGL. DEV. = 19.1 DEGREES REMARK 500 ASP A 142 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 179 C - N - CA ANGL. DEV. = -15.4 DEGREES REMARK 500 ASP A 189 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU A 192 CA - CB - CG ANGL. DEV. = 19.4 DEGREES REMARK 500 THR A 235 N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 LEU A 263 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 ARG A 269 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP B 85 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 LEU B 139 CA - CB - CG ANGL. DEV. = 17.3 DEGREES REMARK 500 LEU B 158 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 LEU B 158 CB - CG - CD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 LEU B 169 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 12 -93.33 -56.83 REMARK 500 ASP A 31 -17.13 -42.65 REMARK 500 LEU A 107 -62.66 -104.38 REMARK 500 ASN A 159 -75.70 -99.26 REMARK 500 LYS A 165 133.51 -37.09 REMARK 500 ILE A 178 -68.41 -102.86 REMARK 500 ASP A 179 62.41 -116.65 REMARK 500 ALA A 201 -128.99 -101.87 REMARK 500 ASP A 248 49.09 -103.27 REMARK 500 LEU B 107 -84.51 -108.91 REMARK 500 ASN B 159 -71.29 -99.92 REMARK 500 LEU B 169 -83.95 -64.06 REMARK 500 ILE B 178 -75.85 -98.46 REMARK 500 ASP B 179 70.87 -118.07 REMARK 500 ALA B 201 -125.96 -98.32 REMARK 500 ARG B 259 -33.90 -151.31 REMARK 500 ASP B 285 83.24 -66.57 REMARK 500 TRP B 304 -90.08 -35.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 178 23.6 L L OUTSIDE RANGE REMARK 500 ARG A 259 24.6 L L OUTSIDE RANGE REMARK 500 ASN B 106 21.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL

REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 360 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A 408 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 443 DISTANCE = 5.64 ANGSTROMS REMARK 525 HOH B 457 DISTANCE = 5.64 ANGSTROMS

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U0R RELATED DB: PDB REMARK 900 RELATED ID: RV1695 RELATED DB: TARGETDB

DBREF 1U0T A 1 307 UNP P0A5S6 PPNK_MYCTU 1 307 DBREF 1U0T B 1 307 UNP P0A5S6 PPNK_MYCTU 1 307

SEQRES 1 A 307 MET THR ALA HIS ARG SER VAL LEU LEU VAL VAL HIS THR SEQRES 2 A 307 GLY ARG ASP GLU ALA THR GLU THR ALA ARG ARG VAL GLU SEQRES 3 A 307 LYS VAL LEU GLY ASP ASN LYS ILE ALA LEU ARG VAL LEU SEQRES 4 A 307 SER ALA GLU ALA VAL ASP ARG GLY SER LEU HIS LEU ALA SEQRES 5 A 307 PRO ASP ASP MET ARG ALA MET GLY VAL GLU ILE GLU VAL SEQRES 6 A 307 VAL ASP ALA ASP GLN HIS ALA ALA ASP GLY CYS GLU LEU SEQRES 7 A 307 VAL LEU VAL LEU GLY GLY ASP GLY THR PHE LEU ARG ALA SEQRES 8 A 307 ALA GLU LEU ALA ARG ASN ALA SER ILE PRO VAL LEU GLY SEQRES 9 A 307 VAL ASN LEU GLY ARG ILE GLY PHE LEU ALA GLU ALA GLU SEQRES 10 A 307 ALA GLU ALA ILE ASP ALA VAL LEU GLU HIS VAL VAL ALA SEQRES 11 A 307 GLN ASP TYR ARG VAL GLU ASP ARG LEU THR LEU ASP VAL SEQRES 12 A 307 VAL VAL ARG GLN GLY GLY ARG ILE VAL ASN ARG GLY TRP SEQRES 13 A 307 ALA LEU ASN GLU VAL SER LEU GLU LYS GLY PRO ARG LEU SEQRES 14 A 307 GLY VAL LEU GLY VAL VAL VAL GLU ILE ASP GLY ARG PRO SEQRES 15 A 307 VAL SER ALA PHE GLY CYS ASP GLY VAL LEU VAL SER THR SEQRES 16 A 307 PRO THR GLY SER THR ALA TYR ALA PHE SER ALA GLY GLY SEQRES 17 A 307 PRO VAL LEU TRP PRO ASP LEU GLU ALA ILE LEU VAL VAL SEQRES 18 A 307 PRO ASN ASN ALA HIS ALA LEU PHE GLY ARG PRO MET VAL SEQRES 19 A 307 THR SER PRO GLU ALA THR ILE ALA ILE GLU ILE GLU ALA SEQRES 20 A 307 ASP GLY HIS ASP ALA LEU VAL PHE CYS ASP GLY ARG ARG SEQRES 21 A 307 GLU MET LEU ILE PRO ALA GLY SER ARG LEU GLU VAL THR SEQRES 22 A 307 ARG CYS VAL THR SER VAL LYS TRP ALA ARG LEU ASP SER SEQRES 23 A 307 ALA PRO PHE THR ASP ARG LEU VAL ARG LYS PHE ARG LEU SEQRES 24 A 307 PRO VAL THR GLY TRP ARG GLY LYS SEQRES 1 B 307 MET THR ALA HIS ARG SER VAL LEU LEU VAL VAL HIS THR SEQRES 2 B 307 GLY ARG ASP GLU ALA THR GLU THR ALA ARG ARG VAL GLU SEQRES 3 B 307 LYS VAL LEU GLY ASP ASN LYS ILE ALA LEU ARG VAL LEU SEQRES 4 B 307 SER ALA GLU ALA VAL ASP ARG GLY SER LEU HIS LEU ALA SEQRES 5 B 307 PRO ASP ASP MET ARG ALA MET GLY VAL GLU ILE GLU VAL SEQRES 6 B 307 VAL ASP ALA ASP GLN HIS ALA ALA ASP GLY CYS GLU LEU SEQRES 7 B 307 VAL LEU VAL LEU GLY GLY ASP GLY THR PHE LEU ARG ALA SEQRES 8 B 307 ALA GLU LEU ALA ARG ASN ALA SER ILE PRO VAL LEU GLY SEQRES 9 B 307 VAL ASN LEU GLY ARG ILE GLY PHE LEU ALA GLU ALA GLU SEQRES 10 B 307 ALA GLU ALA ILE ASP ALA VAL LEU GLU HIS VAL VAL ALA SEQRES 11 B 307 GLN ASP TYR ARG VAL GLU ASP ARG LEU THR LEU ASP VAL SEQRES 12 B 307 VAL VAL ARG GLN GLY GLY ARG ILE VAL ASN ARG GLY TRP SEQRES 13 B 307 ALA LEU ASN GLU VAL SER LEU GLU LYS GLY PRO ARG LEU SEQRES 14 B 307 GLY VAL LEU GLY VAL VAL VAL GLU ILE ASP GLY ARG PRO SEQRES 15 B 307 VAL SER ALA PHE GLY CYS ASP GLY VAL LEU VAL SER THR SEQRES 16 B 307 PRO THR GLY SER THR ALA TYR ALA PHE SER ALA GLY GLY SEQRES 17 B 307 PRO VAL LEU TRP PRO ASP LEU GLU ALA ILE LEU VAL VAL SEQRES 18 B 307 PRO ASN ASN ALA HIS ALA LEU PHE GLY ARG PRO MET VAL SEQRES 19 B 307 THR SER PRO GLU ALA THR ILE ALA ILE GLU ILE GLU ALA SEQRES 20 B 307 ASP GLY HIS ASP ALA LEU VAL PHE CYS ASP GLY ARG ARG SEQRES 21 B 307 GLU MET LEU ILE PRO ALA GLY SER ARG LEU GLU VAL THR SEQRES 22 B 307 ARG CYS VAL THR SER VAL LYS TRP ALA ARG LEU ASP SER SEQRES 23 B 307 ALA PRO PHE THR ASP ARG LEU VAL ARG LYS PHE ARG LEU SEQRES 24 B 307 PRO VAL THR GLY TRP ARG GLY LYS

FORMUL 3 HOH *276(H2 O)

HELIX 1 1 GLY A 14 ALA A 18 5 5 HELIX 2 2 THR A 19 ASP A 31 1 13 HELIX 3 3 GLY A 84 SER A 99 1 16 HELIX 4 4 ALA A 120 GLN A 131 1 12 HELIX 5 5 PRO A 196 THR A 200 5 5 HELIX 6 6 ALA A 201 ALA A 206 1 6 HELIX 7 7 PRO A 288 ARG A 298 1 11 HELIX 8 8 THR B 13 GLU B 17 5 5 HELIX 9 9 THR B 19 ASN B 32 1 14 HELIX 10 10 GLY B 84 SER B 99 1 16 HELIX 11 11 ALA B 120 GLN B 131 1 12 HELIX 12 12 PRO B 196 THR B 200 5 5 HELIX 13 13 ALA B 201 ALA B 206 1 6 HELIX 14 14 PRO B 288 ARG B 298 1 11 HELIX 15 15 GLY B 303 LYS B 307 5 5

SHEET 1 A 5 ALA A 35 LEU A 39 0 SHEET 2 A 5 SER A 6 VAL A 11 1 N LEU A 9 O ARG A 37 SHEET 3 A 5 VAL A 79 GLY A 83 1 O LEU A 82 N VAL A 10 SHEET 4 A 5 VAL A 102 ASN A 106 1 O VAL A 105 N VAL A 81 SHEET 5 A 5 ALA A 116 GLU A 117 1 O ALA A 116 N ASN A 106 SHEET 1 B 2 ARG A 134 ARG A 138 0 SHEET 2 B 2 VAL A 279 ARG A 283 -1 O TRP A 281 N GLU A 136 SHEET 1 C 6 ARG A 150 ALA A 157 0 SHEET 2 C 6 LEU A 141 GLN A 147 -1 N LEU A 141 O ALA A 157 SHEET 3 C 6 ARG A 269 ARG A 274 -1 O THR A 273 N ASP A 142 SHEET 4 C 6 ILE A 241 ILE A 245 -1 N ILE A 241 O VAL A 272 SHEET 5 C 6 LEU A 172 GLU A 177 -1 N GLU A 177 O ALA A 242 SHEET 6 C 6 PRO A 182 CYS A 188 -1 O SER A 184 N VAL A 176 SHEET 1 D 7 ARG A 260 ILE A 264 0 SHEET 2 D 7 ALA A 252 CYS A 256 -1 N ALA A 252 O ILE A 264 SHEET 3 D 7 GLU A 160 GLU A 164 -1 N SER A 162 O PHE A 255 SHEET 4 D 7 GLY A 190 SER A 194 -1 O VAL A 193 N VAL A 161 SHEET 5 D 7 ILE A 218 ASN A 223 -1 O LEU A 219 N SER A 194 SHEET 6 D 7 MET A 233 THR A 235 -1 O MET A 233 N VAL A 220 SHEET 7 D 7 VAL B 210 LEU B 211 1 O VAL B 210 N VAL A 234 SHEET 1 E 7 VAL A 210 LEU A 211 0 SHEET 2 E 7 MET B 233 THR B 235 1 O VAL B 234 N VAL A 210 SHEET 3 E 7 ILE B 218 ASN B 223 -1 N VAL B 220 O MET B 233 SHEET 4 E 7 GLY B 190 SER B 194 -1 N SER B 194 O LEU B 219 SHEET 5 E 7 GLU B 160 LYS B 165 -1 N VAL B 161 O VAL B 193 SHEET 6 E 7 ALA B 252 CYS B 256 -1 O PHE B 255 N SER B 162 SHEET 7 E 7 ARG B 260 ILE B 264 -1 O ILE B 264 N ALA B 252 SHEET 1 F 5 ALA B 35 SER B 40 0 SHEET 2 F 5 SER B 6 VAL B 11 1 N LEU B 9 O ARG B 37 SHEET 3 F 5 LEU B 78 LEU B 82 1 O LEU B 80 N LEU B 8 SHEET 4 F 5 PRO B 101 ASN B 106 1 O LEU B 103 N VAL B 81 SHEET 5 F 5 ALA B 116 GLU B 117 1 O ALA B 116 N ASN B 106 SHEET 1 G 6 ALA B 35 SER B 40 0 SHEET 2 G 6 SER B 6 VAL B 11 1 N LEU B 9 O ARG B 37 SHEET 3 G 6 LEU B 78 LEU B 82 1 O LEU B 80 N LEU B 8 SHEET 4 G 6 PRO B 101 ASN B 106 1 O LEU B 103 N VAL B 81 SHEET 5 G 6 VAL B 279 ARG B 283 1 O ALA B 282 N VAL B 102 SHEET 6 G 6 ARG B 134 ARG B 138 -1 N GLU B 136 O TRP B 281 SHEET 1 H 6 ARG B 150 ALA B 157 0 SHEET 2 H 6 LEU B 141 GLN B 147 -1 N LEU B 141 O ALA B 157 SHEET 3 H 6 ARG B 269 ARG B 274 -1 O THR B 273 N ASP B 142 SHEET 4 H 6 ILE B 241 ILE B 245 -1 N ILE B 241 O VAL B 272 SHEET 5 H 6 LEU B 172 GLU B 177 -1 N GLU B 177 O ALA B 242 SHEET 6 H 6 PRO B 182 CYS B 188 -1 O VAL B 183 N VAL B 176

CRYST1 64.757 145.655 68.713 90.00 90.00 90.00 P 21 21 2 8

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.015442 0.000000 0.000000 0.00000

SCALE2 0.000000 0.006866 0.000000 0.00000

SCALE3 0.000000 0.000000 0.014553 0.00000