10 20 30 40 50 60 70 80 1TZC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE 09-JUL-04 1TZC
TITLE CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE/PHOSPHOMANNOSE ISOMERASE FROM TITLE 2 PYROBACULUM AEROPHILUM IN COMPLEX WITH 5-PHOSPHOARABINONATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE ISOMERASE, CONJECTURAL; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.9, 5.3.1.8; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM; SOURCE 3 ORGANISM_TAXID: 178306; SOURCE 4 STRAIN: STR. IM2; SOURCE 5 GENE: PAE1610; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17B
KEYWDS ENZYME, CRENARCHAEON, HYPERTHERMOPHILE, PGI FAMILY, ISOMERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR M.K.SWAN,T.HANSEN,P.SCHOENHEIT,C.DAVIES
REVDAT 4 13-JUL-11 1TZC 1 VERSN REVDAT 3 24-FEB-09 1TZC 1 VERSN REVDAT 2 02-NOV-04 1TZC 1 JRNL REVDAT 1 20-JUL-04 1TZC 0
JRNL AUTH M.K.SWAN,T.HANSEN,P.SCHOENHEIT,C.DAVIES JRNL TITL A NOVEL PHOSPHOGLUCOSE/PHOSPHOMANNOSE ISOMEASE FROM THE JRNL TITL 2 CRENARCHAEON PYROBACULUM AEROPHILUM IS A MEMBER OF THE PGI JRNL TITL 3 SUPERFAMILY: STRUCTURAL EVIDENCE AT 1.16 A RESOLUTION JRNL REF J.BIOL.CHEM. V. 279 39838 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15252053 JRNL DOI 10.1074/JBC.M406855200
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.K.SWAN,T.HANSEN,P.SCHOENHEIT,C.DAVIES REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS REMARK 1 TITL 2 OF PHOSPHOGLUCOSE/PHOSPHOMANNOSE ISOMERASE FROM PYROBACULUM REMARK 1 TITL 3 AEROPHILUM REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN
REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 97736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4866 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3900 REMARK 3 BIN FREE R VALUE SET COUNT : 366 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4717 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 439 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.075 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4929 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4678 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6707 ; 1.273 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10851 ; 1.091 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 602 ; 5.827 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 776 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5334 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 953 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 932 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5479 ; 0.233 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2928 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 356 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.104 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 58 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3023 ; 0.586 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4924 ; 1.099 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1906 ; 1.829 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1778 ; 3.147 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1TZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-04. REMARK 100 THE RCSB ID CODE IS RCSB023051.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97954 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : 0.46200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: REFINEMENT FROM NATIVE REMARK 200 STRUCTURE REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NATIVE STRUCTURE REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% POLYETHYLENE GLYCOL 8000, 0.22M REMARK 280 AMMONIUM SULPHATE, 100MM TRIS, PH 8.5 , VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.42500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER. THE ASYMMETRIC UNIT IS A REMARK 300 DIMER.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 301 O HOH A 623 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 301 N - CA - C ANGL. DEV. = 20.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 65 59.95 -92.72 REMARK 500 ASN A 220 -69.45 -160.49 REMARK 500 MET A 261 36.23 -93.47 REMARK 500 ASN B 220 -72.66 -162.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 301 19.6 L L OUTSIDE RANGE REMARK 500 GLN A 302 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 454 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 455 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PA5 A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PA5 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 502
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TZB RELATED DB: PDB
DBREF 1TZC A 1 302 UNP Q8ZWV0 Q8ZWV0_PYRAE 1 302 DBREF 1TZC B 1 302 UNP Q8ZWV0 Q8ZWV0_PYRAE 1 302
SEQRES 1 A 302 MET SER GLN LEU LEU GLN ASP TYR LEU ASN TRP GLU ASN SEQRES 2 A 302 TYR ILE LEU ARG ARG VAL ASP PHE PRO THR SER TYR VAL SEQRES 3 A 302 VAL GLU GLY GLU VAL VAL ARG ILE GLU ALA MET PRO ARG SEQRES 4 A 302 LEU TYR ILE SER GLY MET GLY GLY SER GLY VAL VAL ALA SEQRES 5 A 302 ASP LEU ILE ARG ASP PHE SER LEU THR TRP ASN TRP GLU SEQRES 6 A 302 VAL GLU VAL ILE ALA VAL LYS ASP TYR PHE LEU LYS ALA SEQRES 7 A 302 ARG ASP GLY LEU LEU ILE ALA VAL SER TYR SER GLY ASN SEQRES 8 A 302 THR ILE GLU THR LEU TYR THR VAL GLU TYR ALA LYS ARG SEQRES 9 A 302 ARG ARG ILE PRO ALA VAL ALA ILE THR THR GLY GLY ARG SEQRES 10 A 302 LEU ALA GLN MET GLY VAL PRO THR VAL ILE VAL PRO LYS SEQRES 11 A 302 ALA SER ALA PRO ARG ALA ALA LEU PRO GLN LEU LEU THR SEQRES 12 A 302 ALA ALA LEU HIS VAL VAL ALA LYS VAL TYR GLY ILE ASP SEQRES 13 A 302 VAL LYS ILE PRO GLU GLY LEU GLU PRO PRO ASN GLU ALA SEQRES 14 A 302 LEU ILE HIS LYS LEU VAL GLU GLU PHE GLN LYS ARG PRO SEQRES 15 A 302 THR ILE ILE ALA ALA GLU SER MET ARG GLY VAL ALA TYR SEQRES 16 A 302 ARG VAL LYS ASN GLU PHE ASN GLU ASN ALA LYS ILE GLU SEQRES 17 A 302 PRO SER VAL GLU ILE LEU PRO GLU ALA HIS HIS ASN TRP SEQRES 18 A 302 ILE GLU GLY SER GLU ARG ALA VAL VAL ALA LEU THR SER SEQRES 19 A 302 PRO HIS ILE PRO LYS GLU HIS GLN GLU ARG VAL LYS ALA SEQRES 20 A 302 THR VAL GLU ILE VAL GLY GLY SER ILE TYR ALA VAL GLU SEQRES 21 A 302 MET HIS PRO LYS GLY VAL LEU SER PHE LEU ARG ASP VAL SEQRES 22 A 302 GLY ILE ALA SER VAL LYS LEU ALA GLU ILE ARG GLY VAL SEQRES 23 A 302 ASN PRO LEU ALA THR PRO ARG ILE ASP ALA LEU LYS ARG SEQRES 24 A 302 ARG LEU GLN SEQRES 1 B 302 MET SER GLN LEU LEU GLN ASP TYR LEU ASN TRP GLU ASN SEQRES 2 B 302 TYR ILE LEU ARG ARG VAL ASP PHE PRO THR SER TYR VAL SEQRES 3 B 302 VAL GLU GLY GLU VAL VAL ARG ILE GLU ALA MET PRO ARG SEQRES 4 B 302 LEU TYR ILE SER GLY MET GLY GLY SER GLY VAL VAL ALA SEQRES 5 B 302 ASP LEU ILE ARG ASP PHE SER LEU THR TRP ASN TRP GLU SEQRES 6 B 302 VAL GLU VAL ILE ALA VAL LYS ASP TYR PHE LEU LYS ALA SEQRES 7 B 302 ARG ASP GLY LEU LEU ILE ALA VAL SER TYR SER GLY ASN SEQRES 8 B 302 THR ILE GLU THR LEU TYR THR VAL GLU TYR ALA LYS ARG SEQRES 9 B 302 ARG ARG ILE PRO ALA VAL ALA ILE THR THR GLY GLY ARG SEQRES 10 B 302 LEU ALA GLN MET GLY VAL PRO THR VAL ILE VAL PRO LYS SEQRES 11 B 302 ALA SER ALA PRO ARG ALA ALA LEU PRO GLN LEU LEU THR SEQRES 12 B 302 ALA ALA LEU HIS VAL VAL ALA LYS VAL TYR GLY ILE ASP SEQRES 13 B 302 VAL LYS ILE PRO GLU GLY LEU GLU PRO PRO ASN GLU ALA SEQRES 14 B 302 LEU ILE HIS LYS LEU VAL GLU GLU PHE GLN LYS ARG PRO SEQRES 15 B 302 THR ILE ILE ALA ALA GLU SER MET ARG GLY VAL ALA TYR SEQRES 16 B 302 ARG VAL LYS ASN GLU PHE ASN GLU ASN ALA LYS ILE GLU SEQRES 17 B 302 PRO SER VAL GLU ILE LEU PRO GLU ALA HIS HIS ASN TRP SEQRES 18 B 302 ILE GLU GLY SER GLU ARG ALA VAL VAL ALA LEU THR SER SEQRES 19 B 302 PRO HIS ILE PRO LYS GLU HIS GLN GLU ARG VAL LYS ALA SEQRES 20 B 302 THR VAL GLU ILE VAL GLY GLY SER ILE TYR ALA VAL GLU SEQRES 21 B 302 MET HIS PRO LYS GLY VAL LEU SER PHE LEU ARG ASP VAL SEQRES 22 B 302 GLY ILE ALA SER VAL LYS LEU ALA GLU ILE ARG GLY VAL SEQRES 23 B 302 ASN PRO LEU ALA THR PRO ARG ILE ASP ALA LEU LYS ARG SEQRES 24 B 302 ARG LEU GLN
HET SO4 A 451 5 HET SO4 B 452 5 HET SO4 B 453 5 HET SO4 B 454 5 HET SO4 A 455 5 HET PA5 A 600 15 HET PA5 B 601 15 HET GOL A 501 6 HET GOL B 502 6
HETNAM SO4 SULFATE ION HETNAM PA5 5-PHOSPHOARABINONIC ACID HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 PA5 2(C5 H11 O9 P) FORMUL 10 GOL 2(C3 H8 O3) FORMUL 12 HOH *439(H2 O)
HELIX 1 1 SER A 2 ASN A 10 1 9 HELIX 2 2 TRP A 11 ILE A 15 5 5 HELIX 3 3 MET A 45 TRP A 62 1 18 HELIX 4 4 THR A 92 ARG A 106 1 15 HELIX 5 5 ARG A 117 MET A 121 5 5 HELIX 6 6 ALA A 133 ALA A 136 5 4 HELIX 7 7 ALA A 137 GLY A 154 1 18 HELIX 8 8 ASN A 167 GLN A 179 1 13 HELIX 9 9 MET A 190 ASN A 204 1 15 HELIX 10 10 PRO A 215 HIS A 219 5 5 HELIX 11 11 ASN A 220 SER A 225 1 6 HELIX 12 12 PRO A 238 GLY A 253 1 16 HELIX 13 13 HIS A 262 GLY A 285 1 24 HELIX 14 14 THR A 291 GLN A 302 1 12 HELIX 15 15 SER B 2 ASN B 10 1 9 HELIX 16 16 TRP B 11 ILE B 15 5 5 HELIX 17 17 MET B 45 TRP B 62 1 18 HELIX 18 18 THR B 92 ARG B 105 1 14 HELIX 19 19 ARG B 117 MET B 121 5 5 HELIX 20 20 ALA B 133 ALA B 136 5 4 HELIX 21 21 ALA B 137 GLY B 154 1 18 HELIX 22 22 ASN B 167 GLN B 179 1 13 HELIX 23 23 MET B 190 ASN B 204 1 15 HELIX 24 24 PRO B 215 HIS B 219 5 5 HELIX 25 25 ASN B 220 SER B 225 1 6 HELIX 26 26 PRO B 238 GLY B 253 1 16 HELIX 27 27 HIS B 262 GLY B 285 1 24 HELIX 28 28 THR B 291 GLN B 302 1 12
SHEET 1 A 2 SER A 24 VAL A 27 0 SHEET 2 A 2 GLU A 30 ARG A 33 -1 O VAL A 32 N TYR A 25 SHEET 1 B 5 GLU A 67 VAL A 71 0 SHEET 2 B 5 ARG A 39 SER A 43 1 N LEU A 40 O GLU A 67 SHEET 3 B 5 LEU A 82 VAL A 86 1 O LEU A 82 N TYR A 41 SHEET 4 B 5 ALA A 109 THR A 113 1 O VAL A 110 N ALA A 85 SHEET 5 B 5 THR A 125 ILE A 127 1 O VAL A 126 N ALA A 111 SHEET 1 C 4 SER A 210 LEU A 214 0 SHEET 2 C 4 THR A 183 ALA A 187 1 N ILE A 184 O SER A 210 SHEET 3 C 4 VAL A 229 THR A 233 1 O LEU A 232 N ILE A 185 SHEET 4 C 4 SER A 255 ALA A 258 1 O SER A 255 N ALA A 231 SHEET 1 D 2 SER B 24 VAL B 27 0 SHEET 2 D 2 GLU B 30 ARG B 33 -1 O VAL B 32 N TYR B 25 SHEET 1 E 5 GLU B 67 VAL B 71 0 SHEET 2 E 5 ARG B 39 SER B 43 1 N LEU B 40 O GLU B 67 SHEET 3 E 5 LEU B 82 VAL B 86 1 O LEU B 82 N TYR B 41 SHEET 4 E 5 ALA B 109 THR B 113 1 O VAL B 110 N ALA B 85 SHEET 5 E 5 THR B 125 ILE B 127 1 O VAL B 126 N ALA B 111 SHEET 1 F 4 SER B 210 LEU B 214 0 SHEET 2 F 4 THR B 183 ALA B 187 1 N ILE B 184 O SER B 210 SHEET 3 F 4 VAL B 229 THR B 233 1 O LEU B 232 N ILE B 185 SHEET 4 F 4 SER B 255 ALA B 258 1 O SER B 255 N ALA B 231
CISPEP 1 LEU A 214 PRO A 215 0 3.68 CISPEP 2 LEU A 301 GLN A 302 0 -17.48 CISPEP 3 LEU B 214 PRO B 215 0 5.64
SITE 1 AC1 6 ARG A 181 ARG A 284 HOH A 780 HOH A 809 SITE 2 AC1 6 ARG B 106 HOH B 761 SITE 1 AC2 2 ARG B 104 ARG B 105 SITE 1 AC3 4 GLN B 179 ARG B 181 ARG B 284 HOH B 775 SITE 1 AC4 3 HOH A 771 ARG B 299 ARG B 300 SITE 1 AC5 2 ARG A 104 ARG A 105 SITE 1 AC6 16 MET A 45 GLY A 46 GLY A 47 SER A 48 SITE 2 AC6 16 SER A 87 TYR A 88 SER A 89 THR A 92 SITE 3 AC6 16 PRO A 134 ARG A 135 GLU A 203 LYS A 298 SITE 4 AC6 16 HOH A 601 HOH A 617 HOH A 705 HIS B 219 SITE 1 AC7 17 HIS A 219 MET B 45 GLY B 46 GLY B 47 SITE 2 AC7 17 SER B 48 SER B 87 TYR B 88 SER B 89 SITE 3 AC7 17 THR B 92 PRO B 134 ARG B 135 GLU B 203 SITE 4 AC7 17 LYS B 298 HOH B 608 HOH B 622 HOH B 645 SITE 5 AC7 17 HOH B 648 SITE 1 AC8 4 THR A 233 GLN A 242 HOH A 708 HOH A 811 SITE 1 AC9 6 PHE A 75 LYS A 77 SER B 59 LEU B 60 SITE 2 AC9 6 ASN B 63 HOH B 806
CRYST1 55.800 100.850 55.800 90.00 113.70 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017908 0.000000 0.007854 0.00000
SCALE2 0.000000 0.009916 0.000000 0.00000
SCALE3 0.000000 0.000000 0.019568 0.00000