10 20 30 40 50 60 70 80 1TZ4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER NEUROPEPTIDE 09-JUL-04 1TZ4
TITLE [HPP19-23]-PNPY BOUND TO DPC MICELLES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHIMERA OF NEUROPEPTIDE Y AND PANCREATIC HORMONE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: [HPP19-23]-PNPY; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: PIG, HUMAN; SOURCE 4 ORGANISM_TAXID: 9823,9606; SOURCE 5 STRAIN: ,; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PUBK19-[HPP19-23]-PNPY-G
KEYWDS NPY-PP CHIMERA, NEUROPEPTIDE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.LERCH,H.KAMIMORI,G.FOLKERS,M.I.AGUILAR,A.G.BECK-SICKINGER, AUTHOR 2 O.ZERBE
REVDAT 2 24-FEB-09 1TZ4 1 VERSN REVDAT 1 05-JUL-05 1TZ4 0
JRNL AUTH M.LERCH,H.KAMIMORI,G.FOLKERS,M.I.AGUILAR, JRNL AUTH 2 A.G.BECK-SICKINGER,O.ZERBE JRNL TITL STRONGLY ALTERED RECEPTOR BINDING PROPERTIES IN PP JRNL TITL 2 AND NPY CHIMERAS ARE ACCOMPANIED BY CHANGES IN JRNL TITL 3 STRUCTURE AND MEMBRANE BINDING JRNL REF BIOCHEMISTRY V. 44 9255 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15966750 JRNL DOI 10.1021/BI0501232
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUENTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FURTHER REFINEMENT USING THE PROGRAM REMARK 3 AMBER (EXPLICIT SOLVENT)
REMARK 4 REMARK 4 1TZ4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUL-04. REMARK 100 THE RCSB ID CODE IS RCSB023043.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2MM [HPP19-23]-PNPY; 90% H2O, REMARK 210 10% D2O; 2MM [HPP19-23]-PNPY; REMARK 210 99% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 700 MHZ REMARK 210 SPECTROMETER MODEL : DRX, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, XEASY 1.53, REMARK 210 DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 FOLLOWED BY REFINEMENT IN REMARK 210 AMBER6 REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY, STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND REMARK 210 ENERGY, STRUCTURES WITH THE REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 4 81.85 -166.84 REMARK 500 1 GLU A 10 113.11 -166.52 REMARK 500 1 ALA A 14 20.08 90.23 REMARK 500 1 ASP A 16 -43.58 -176.57 REMARK 500 1 GLN A 34 -27.71 -140.12 REMARK 500 1 ARG A 35 -137.12 -70.81 REMARK 500 2 LYS A 4 79.17 53.67 REMARK 500 2 ASP A 11 109.23 168.69 REMARK 500 2 ALA A 12 166.25 62.55 REMARK 500 2 ALA A 14 17.05 81.32 REMARK 500 2 ASP A 16 -43.44 -163.56 REMARK 500 2 LEU A 30 30.95 -80.59 REMARK 500 2 ILE A 31 -52.51 -139.87 REMARK 500 2 GLN A 34 15.78 -143.07 REMARK 500 2 ARG A 35 -140.48 -114.88 REMARK 500 3 SER A 3 88.07 53.20 REMARK 500 3 ASP A 11 97.20 -176.70 REMARK 500 3 ALA A 12 166.60 59.88 REMARK 500 3 ALA A 14 23.88 82.69 REMARK 500 3 ASP A 16 -45.86 -173.97 REMARK 500 3 GLN A 34 34.73 -151.59 REMARK 500 4 PRO A 2 48.99 -72.92 REMARK 500 4 SER A 3 88.32 -163.83 REMARK 500 4 PRO A 5 -174.68 -68.95 REMARK 500 4 GLU A 10 99.05 58.10 REMARK 500 4 ALA A 14 23.37 -166.61 REMARK 500 4 GLU A 15 -132.97 -122.23 REMARK 500 4 GLN A 34 20.69 -149.58 REMARK 500 5 GLU A 10 104.67 59.93 REMARK 500 5 ASP A 11 91.28 56.53 REMARK 500 5 ALA A 12 159.60 62.08 REMARK 500 5 ALA A 14 47.43 75.49 REMARK 500 5 ASP A 16 -63.53 -140.47 REMARK 500 5 LEU A 30 23.99 -76.19 REMARK 500 5 ILE A 31 -50.71 -125.95 REMARK 500 5 GLN A 34 29.66 -154.58 REMARK 500 6 SER A 3 -55.52 -145.13 REMARK 500 6 LYS A 4 72.10 51.36 REMARK 500 6 ASN A 7 133.91 -177.54 REMARK 500 6 GLU A 10 -37.47 159.30 REMARK 500 6 ASP A 11 -57.16 -173.20 REMARK 500 6 ALA A 12 66.72 65.08 REMARK 500 6 ALA A 14 40.93 -72.66 REMARK 500 6 ASP A 16 -46.01 -156.23 REMARK 500 6 GLN A 34 32.08 -157.94 REMARK 500 7 LYS A 4 74.25 61.80 REMARK 500 7 ASP A 6 -60.79 -133.38 REMARK 500 7 ASN A 7 82.99 51.58 REMARK 500 7 GLU A 10 106.37 -167.52 REMARK 500 7 ASP A 11 91.53 167.04 REMARK 500 7 ALA A 14 29.88 -155.07 REMARK 500 7 GLU A 15 -150.55 -123.18 REMARK 500 7 GLN A 34 37.36 -162.73 REMARK 500 8 SER A 3 -55.56 -162.39 REMARK 500 8 GLU A 10 96.58 58.71 REMARK 500 8 ASP A 11 -63.85 -125.50 REMARK 500 8 ALA A 12 155.28 67.38 REMARK 500 8 ALA A 14 15.86 82.49 REMARK 500 8 ASP A 16 -40.93 -167.22 REMARK 500 8 ALA A 18 32.84 -65.40 REMARK 500 8 GLN A 19 -36.95 -154.99 REMARK 500 8 GLN A 34 54.08 -161.69 REMARK 500 9 SER A 3 95.64 -166.93 REMARK 500 9 LYS A 4 -60.28 175.52 REMARK 500 9 GLU A 10 -39.82 -169.54 REMARK 500 9 ASP A 11 98.30 -174.54 REMARK 500 9 GLU A 15 -139.90 -121.98 REMARK 500 9 ALA A 18 30.40 -64.43 REMARK 500 9 GLN A 19 -39.58 -149.41 REMARK 500 9 GLN A 34 45.68 -159.80 REMARK 500 10 SER A 3 58.96 -175.79 REMARK 500 10 ASP A 16 -43.46 -163.99 REMARK 500 10 ILE A 28 -48.99 -144.65 REMARK 500 10 GLN A 34 -39.74 -142.89 REMARK 500 10 ARG A 35 -144.51 -66.76 REMARK 500 11 ASP A 6 -62.80 67.52 REMARK 500 11 GLU A 10 -59.27 -136.08 REMARK 500 11 ASP A 11 78.87 -159.63 REMARK 500 11 ALA A 12 164.62 59.80 REMARK 500 11 ALA A 14 26.17 -173.91 REMARK 500 11 ASP A 16 -57.60 65.89 REMARK 500 11 GLN A 34 39.11 -146.66 REMARK 500 11 ARG A 35 -141.86 -156.77 REMARK 500 12 SER A 3 -55.49 -167.16 REMARK 500 12 LYS A 4 64.01 37.92 REMARK 500 12 ASP A 6 83.93 45.44 REMARK 500 12 ALA A 12 86.32 55.79 REMARK 500 12 ALA A 14 39.32 -171.38 REMARK 500 12 GLU A 15 -137.33 -117.64 REMARK 500 12 GLN A 34 -41.54 -145.61 REMARK 500 12 ARG A 35 -152.83 -69.62 REMARK 500 13 SER A 3 -82.45 -170.52 REMARK 500 13 ASN A 7 90.32 -174.48 REMARK 500 13 GLU A 10 -48.16 -178.79 REMARK 500 13 ASP A 11 107.60 -169.95 REMARK 500 13 ALA A 12 76.27 -161.90 REMARK 500 13 PRO A 13 46.90 -74.88 REMARK 500 13 ALA A 14 122.65 -174.75 REMARK 500 13 GLU A 15 143.26 67.09 REMARK 500 13 ASP A 16 -47.45 74.35 REMARK 500 13 GLN A 34 26.98 -142.82 REMARK 500 13 ARG A 35 -142.12 -128.19 REMARK 500 14 SER A 3 -51.98 -159.33 REMARK 500 14 LYS A 4 83.24 30.73 REMARK 500 14 GLU A 10 -48.78 -160.94 REMARK 500 14 ASP A 11 -64.51 -121.36 REMARK 500 14 ALA A 14 46.79 78.12 REMARK 500 14 ASP A 16 -75.02 -138.05 REMARK 500 14 GLN A 34 30.50 -156.71 REMARK 500 14 ARG A 35 -137.53 -123.95 REMARK 500 15 SER A 3 -53.48 -168.03 REMARK 500 15 ASP A 6 91.84 -163.84 REMARK 500 15 GLU A 10 114.86 63.65 REMARK 500 15 ASP A 11 79.63 48.08 REMARK 500 15 ALA A 14 44.30 -165.59 REMARK 500 15 GLU A 15 -134.07 -119.33 REMARK 500 15 ARG A 35 -134.26 -84.62 REMARK 500 16 SER A 3 -33.54 170.39 REMARK 500 16 GLU A 10 -37.26 172.20 REMARK 500 16 ALA A 12 83.23 -165.06 REMARK 500 16 ALA A 14 17.25 89.63 REMARK 500 16 ASP A 16 -45.00 68.79 REMARK 500 16 ALA A 18 32.85 -64.60 REMARK 500 16 GLN A 19 -38.12 -153.93 REMARK 500 16 GLN A 34 20.05 -142.64 REMARK 500 16 ARG A 35 -141.81 -129.28 REMARK 500 17 ASN A 7 154.79 70.02 REMARK 500 17 ASP A 11 -58.10 71.62 REMARK 500 17 ALA A 12 72.52 43.00 REMARK 500 17 PRO A 13 80.54 -69.45 REMARK 500 17 ALA A 14 33.16 70.95 REMARK 500 17 ASP A 16 -36.83 -175.81 REMARK 500 17 ALA A 18 30.67 -64.63 REMARK 500 17 GLN A 19 -37.77 -154.24 REMARK 500 17 ILE A 28 -48.24 -141.69 REMARK 500 17 ARG A 35 -144.01 -130.95 REMARK 500 18 PRO A 2 -71.68 -76.64 REMARK 500 18 LYS A 4 80.61 58.83 REMARK 500 18 ASP A 6 -86.41 -160.40 REMARK 500 18 ASN A 7 102.17 -161.30 REMARK 500 18 GLU A 10 -28.18 172.24 REMARK 500 18 ALA A 14 46.81 82.12 REMARK 500 18 ASP A 16 -63.21 -163.20 REMARK 500 18 GLN A 34 -42.37 -142.37 REMARK 500 19 SER A 3 -45.93 -155.19 REMARK 500 19 ASP A 11 102.50 -169.44 REMARK 500 19 ALA A 12 80.99 52.72 REMARK 500 19 ALA A 14 38.85 72.21 REMARK 500 19 GLU A 15 143.56 -172.85 REMARK 500 19 ASP A 16 -42.72 84.17 REMARK 500 19 GLN A 34 33.58 -159.18 REMARK 500 19 ARG A 35 -138.49 -138.53 REMARK 500 20 SER A 3 93.24 50.28 REMARK 500 20 GLU A 10 -52.09 65.42 REMARK 500 20 ASP A 11 -62.98 70.69 REMARK 500 20 GLU A 15 -6.74 62.45 REMARK 500 20 ASP A 16 -71.45 -138.43 REMARK 500 20 GLN A 34 11.44 -146.18 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 37
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F8P RELATED DB: PDB REMARK 900 PNPY BOUND TO DPC MICELLES REMARK 900 RELATED ID: 1LJV RELATED DB: PDB REMARK 900 BPP BOUND TO DPC MICELLES REMARK 900 RELATED ID: 1TZ5 RELATED DB: PDB REMARK 900 [PNPY19-23]-HPP BOUND TO DPC MICELLES
DBREF 1TZ4 A 1 18 UNP P01304 NEUY_PIG 10 27 DBREF 1TZ4 A 19 23 UNP P01298 PAHO_HUMAN 48 52 DBREF 1TZ4 A 24 36 UNP P01304 NEUY_PIG 33 45
SEQRES 1 A 37 TYR PRO SER LYS PRO ASP ASN PRO GLY GLU ASP ALA PRO SEQRES 2 A 37 ALA GLU ASP LEU ALA GLN TYR ALA ALA ASP LEU ARG HIS SEQRES 3 A 37 TYR ILE ASN LEU ILE THR ARG GLN ARG TYR NH2
HET NH2 A 37 3
HETNAM NH2 AMINO GROUP
FORMUL 1 NH2 H2 N
HELIX 1 1 ASP A 16 ARG A 33 1 18
LINK C TYR A 36 N NH2 A 37 1555 1555 1.33
SITE 1 AC1 2 ARG A 35 TYR A 36
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000