10 20 30 40 50 60 70 80 1TVQ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIPID BINDING PROTEIN 30-JUN-04 1TVQ
TITLE CRYSTAL STRUCTURE OF APO CHICKEN LIVER BASIC FATTY ACID TITLE 2 BINDING PROTEIN (OR BILE ACID BINDING PROTEIN)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-FABP, LIVER BASIC FABP, LB- FABP, BILE ACID- COMPND 5 BINDING PROTEIN
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 TISSUE: LIVER
KEYWDS LB-FABP, FABP, BABP, INTRACELLULAR BILE ACID-BINDING KEYWDS 2 PROTEIN, LIPID BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR D.NICHESOLA,M.PERDUCA,S.CAPALDI,M.E.CARRIZO,P.G.RIGHETTI, AUTHOR 2 H.L.MONACO
REVDAT 2 24-FEB-09 1TVQ 1 VERSN REVDAT 1 23-NOV-04 1TVQ 0
JRNL AUTH D.NICHESOLA,M.PERDUCA,S.CAPALDI,M.E.CARRIZO, JRNL AUTH 2 P.G.RIGHETTI,H.L.MONACO JRNL TITL CRYSTAL STRUCTURE OF CHICKEN LIVER BASIC FATTY JRNL TITL 2 ACID-BINDING PROTEIN COMPLEXED WITH CHOLIC ACID JRNL REF BIOCHEMISTRY V. 43 14072 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15518556 JRNL DOI 10.1021/BI0489661
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.SCAPIN,P.SPADON,M.MAMMI,G.ZANOTTI,H.L.MONACO REMARK 1 TITL CRYSTAL STRUCTURE OF CHICKEN LIVER BASIC FATTY REMARK 1 TITL 2 ACID-BINDING PROTEIN AT 2.7 A RESOLUTION REMARK 1 REF MOL.CELL.BIOCHEM. V. 98 95 1990 REMARK 1 REFN ISSN 0300-8177 REMARK 1 PMID 2266974 REMARK 1 DOI 10.1007/BF00231372 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.SCAPIN,P.SPADON,L.PENGO,M.MAMMI,G.ZANOTTI, REMARK 1 AUTH 2 H.L.MONACO REMARK 1 TITL CHICKEN LIVER BASIC FATTY ACID-BINDING PROTEIN (PI REMARK 1 TITL 2 = 9.0). PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 3 PRELIMINARY X-RAY DATA REMARK 1 REF FEBS LETT. V. 240 196 1988 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 3191992 REMARK 1 DOI 10.1016/0014-5793(88)80367-3
REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 8119382.960 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 11035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1096 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 102 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 989 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.43 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.51 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.73 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1TVQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-04. REMARK 100 THE RCSB ID CODE IS RCSB022950.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL (SI111, SI220) REMARK 200 OPTICS : THREE-SEGMENT PT-COATED REMARK 200 TOROIDAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60486 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.04700 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IMIDAZOLE, PEG 6000, PH 7.5, REMARK 280 MICROGRAVITY, TEMPERATURE 298.0K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.74250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.94300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.17000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.94300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.74250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.17000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TW4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CHOLIC ACID
DBREF 1TVQ A 1 125 UNP P80226 FABPL_CHICK 1 125
SEQRES 1 A 125 ALA PHE SER GLY THR TRP GLN VAL TYR ALA GLN GLU ASN SEQRES 2 A 125 TYR GLU GLU PHE LEU LYS ALA LEU ALA LEU PRO GLU ASP SEQRES 3 A 125 LEU ILE LYS MET ALA ARG ASP ILE LYS PRO ILE VAL GLU SEQRES 4 A 125 ILE GLN GLN LYS GLY ASP ASP PHE VAL VAL THR SER LYS SEQRES 5 A 125 THR PRO ARG GLN THR VAL THR ASN SER PHE THR LEU GLY SEQRES 6 A 125 LYS GLU ALA ASP ILE THR THR MET ASP GLY LYS LYS LEU SEQRES 7 A 125 LYS CYS THR VAL HIS LEU ALA ASN GLY LYS LEU VAL THR SEQRES 8 A 125 LYS SER GLU LYS PHE SER HIS GLU GLN GLU VAL LYS GLY SEQRES 9 A 125 ASN GLU MET VAL GLU THR ILE THR PHE GLY GLY VAL THR SEQRES 10 A 125 LEU ILE ARG ARG SER LYS ARG VAL
FORMUL 2 HOH *127(H2 O)
HELIX 1 1 ASN A 13 LEU A 21 1 9 HELIX 2 2 PRO A 24 ARG A 32 1 9
SHEET 1 A 9 THR A 57 THR A 63 0 SHEET 2 A 9 ASP A 46 LYS A 52 -1 N PHE A 47 O PHE A 62 SHEET 3 A 9 ILE A 37 LYS A 43 -1 N GLU A 39 O THR A 50 SHEET 4 A 9 GLY A 4 GLU A 12 -1 N TRP A 6 O VAL A 38 SHEET 5 A 9 VAL A 116 ARG A 124 -1 O ARG A 121 N ALA A 10 SHEET 6 A 9 GLU A 106 PHE A 113 -1 N ILE A 111 O LEU A 118 SHEET 7 A 9 PHE A 96 LYS A 103 -1 N SER A 97 O THR A 112 SHEET 8 A 9 LYS A 88 SER A 93 -1 N SER A 93 O PHE A 96 SHEET 9 A 9 HIS A 83 ALA A 85 -1 N HIS A 83 O VAL A 90 SHEET 1 B 2 ALA A 68 THR A 71 0 SHEET 2 B 2 LYS A 77 CYS A 80 -1 O LEU A 78 N ILE A 70
CRYST1 39.485 60.340 65.886 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.025326 0.000000 0.000000 0.00000
SCALE2 0.000000 0.016573 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015178 0.00000