10 20 30 40 50 60 70 80 1TUQ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA 25-JUN-04 1TUQ
TITLE NMR STRUCTURE ANALYSIS OF THE B-DNA DODECAMER CTCTCACGTGGAG TITLE 2 WITH A TRICYCLIC CYTOSIN BASE ANALOGUE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(P*CP*TP*CP*(TC1)P*AP*CP*GP*TP*GP*GP*AP*G)- COMPND 3 3'; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES
KEYWDS FLUORESCENT DNA BASE ANALOGUE, B-FORM DNA
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR K.C.ENGMAN,P.SANDIN,S.OSBORNE,T.BROWN,M.BILLETER,P.LINCOLN, AUTHOR 2 B.NORDEN,B.ALBINSSON,L.M.WILHELMSSON
REVDAT 2 24-FEB-09 1TUQ 1 VERSN REVDAT 1 05-OCT-04 1TUQ 0
JRNL AUTH K.C.ENGMAN,P.SANDIN,S.OSBORNE,T.BROWN,M.BILLETER, JRNL AUTH 2 P.LINCOLN,B.NORDEN,B.ALBINSSON,L.M.WILHELMSSON JRNL TITL DNA ADOPTS NORMAL B-FORM UPON INCORPORATION OF JRNL TITL 2 HIGHLY FLUORESCENT DNA BASE ANALOGUE TC: NMR JRNL TITL 3 STRUCTURE AND UV-VIS SPECTROSCOPY CHARACTERIZATION. JRNL REF NUCLEIC ACIDS RES. V. 32 5087 2004 JRNL REFN ISSN 0305-1048 JRNL PMID 15452275 JRNL DOI 10.1093/NAR/GKH844
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.1 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1TUQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-04. REMARK 100 THE RCSB ID CODE IS RCSB022918.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288; 288 REMARK 210 PH : 6; 6 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : NULL; NULL REMARK 210 SAMPLE CONTENTS : 50MM POTASSIUM PHOSPHATE, REMARK 210 100% D2O; 50MM POTASSIUM REMARK 210 PHOSPHATE, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3.13, CYANA 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST CYANA TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DC A 1 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 1 DC A 1 C5' - C4' - O4' ANGL. DEV. = 8.2 DEGREES REMARK 500 1 DC A 1 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DT A 2 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 1 DT A 2 C5' - C4' - O4' ANGL. DEV. = 8.3 DEGREES REMARK 500 1 DT A 2 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DT A 2 C2 - N3 - C4 ANGL. DEV. = -3.6 DEGREES REMARK 500 1 DC A 3 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 1 DC A 3 C5' - C4' - O4' ANGL. DEV. = 8.3 DEGREES REMARK 500 1 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DA A 5 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 1 DA A 5 C5' - C4' - O4' ANGL. DEV. = 8.3 DEGREES REMARK 500 1 DA A 5 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DC A 6 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 1 DC A 6 C5' - C4' - O4' ANGL. DEV. = 8.2 DEGREES REMARK 500 1 DC A 6 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DG A 7 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 1 DG A 7 C5' - C4' - O4' ANGL. DEV. = 8.3 DEGREES REMARK 500 1 DG A 7 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DG A 7 C6 - N1 - C2 ANGL. DEV. = -6.6 DEGREES REMARK 500 1 DG A 7 N1 - C2 - N3 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 DG A 7 C5 - C6 - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 DT A 8 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 1 DT A 8 C5' - C4' - O4' ANGL. DEV. = 8.3 DEGREES REMARK 500 1 DT A 8 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DT A 8 C2 - N3 - C4 ANGL. DEV. = -3.6 DEGREES REMARK 500 1 DG A 9 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 1 DG A 9 C5' - C4' - O4' ANGL. DEV. = 8.3 DEGREES REMARK 500 1 DG A 9 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DG A 9 C6 - N1 - C2 ANGL. DEV. = -6.6 DEGREES REMARK 500 1 DG A 9 N1 - C2 - N3 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 DG A 9 C5 - C6 - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 1 DG A 10 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 1 DG A 10 C5' - C4' - O4' ANGL. DEV. = 8.2 DEGREES REMARK 500 1 DG A 10 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DG A 10 C6 - N1 - C2 ANGL. DEV. = -6.6 DEGREES REMARK 500 1 DG A 10 N1 - C2 - N3 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 DG A 10 C5 - C6 - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 DA A 11 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 1 DA A 11 C5' - C4' - O4' ANGL. DEV. = 8.3 DEGREES REMARK 500 1 DA A 11 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DG A 12 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 1 DG A 12 C5' - C4' - O4' ANGL. DEV. = 8.3 DEGREES REMARK 500 1 DG A 12 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DG A 12 C6 - N1 - C2 ANGL. DEV. = -6.6 DEGREES REMARK 500 1 DG A 12 N1 - C2 - N3 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 DG A 12 C5 - C6 - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 DC B 101 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 1 DC B 101 C5' - C4' - O4' ANGL. DEV. = 8.3 DEGREES REMARK 500 1 DC B 101 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 925 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL
DBREF 1TUQ A 1 12 PDB 1TUQ 1TUQ 1 12 DBREF 1TUQ B 101 112 PDB 1TUQ 1TUQ 101 112
SEQRES 1 A 12 DC DT DC TC1 DA DC DG DT DG DG DA DG SEQRES 1 B 12 DC DT DC TC1 DA DC DG DT DG DG DA DG
MODRES 1TUQ TC1 A 4 DC MODRES 1TUQ TC1 B 104 DC
HET TC1 A 4 39 HET TC1 B 104 39
HETNAM TC1 3-(5-PHOSPHO-2-DEOXY-BETA-D-RIBOFURANOSYL)-2-OXO-1,3- HETNAM 2 TC1 DIAZA-PHENOTHIAZINE
FORMUL 1 TC1 2(C15 H16 N3 O7 P S)
LINK O3' DC A 3 P TC1 A 4 1555 1555 1.60 LINK O3' TC1 A 4 P DA A 5 1555 1555 1.60 LINK O3' DC B 103 P TC1 B 104 1555 1555 1.60 LINK O3' TC1 B 104 P DA B 105 1555 1555 1.60
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000